Clone Name | rbasd22k10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, complete sequence Length = 201229 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 agtagtagggtctcttaggtcag 402 ||||||||||||||||||||||| Sbjct: 37787 agtagtagggtctcttaggtcag 37809
>gb|AC144927.5| Mus musculus chromosome 5, clone RP23-464P20, complete sequence Length = 192593 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 366 ttcttgttagtagtagtagtag 387 |||||||||||||||||||||| Sbjct: 120475 ttcttgttagtagtagtagtag 120496
>ref|XM_527482.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC472103), mRNA Length = 1833 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ggcccttcttcctccctcgcc 236 ||||||||||||||||||||| Sbjct: 1178 ggcccttcttcctccctcgcc 1158
>gb|AC169504.1| Mus musculus BAC clone RP23-416K3 from chromosome 17, complete sequence Length = 215554 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 ctgtcaggctatctatctatc 129 ||||||||||||||||||||| Sbjct: 196099 ctgtcaggctatctatctatc 196119
>ref|NM_003309.1| Homo sapiens TSPY-like 1 (TSPYL1), mRNA Length = 3406 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ggcccttcttcctccctcgcc 236 ||||||||||||||||||||| Sbjct: 797 ggcccttcttcctccctcgcc 777
>gb|BC068554.1| Homo sapiens TSPY-like 1, mRNA (cDNA clone MGC:87466 IMAGE:4797730), complete cds Length = 3225 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ggcccttcttcctccctcgcc 236 ||||||||||||||||||||| Sbjct: 759 ggcccttcttcctccctcgcc 739
>gb|AC125279.1| Mus musculus BAC clone RP23-433F5 from 8, complete sequence Length = 201197 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 ctacttgaagaagaggccctt 222 ||||||||||||||||||||| Sbjct: 123438 ctacttgaagaagaggccctt 123458
>emb|AL050331.11|HSDJ486I3 Human DNA sequence from clone RP3-486I3 on chromosome 6q22.1-22.3 Contains the 3' end of a novel gene, a novel gene, the gene for KIAA0721 (NAP (Nucleosome Assembly Protein) domain containing protein), a novel gene, an RPS5 (40S Ribosomal Protein S5) pseudogene, the TSPYL gene for TSPY-like (testis specific protein, Y-linked like), the 5' end of a novel gene, the 5' end of the SART gene for squamous cell carcinoma antigen recognised by T cell and two CpG islands, complete sequence Length = 118327 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ggcccttcttcctccctcgcc 236 ||||||||||||||||||||| Sbjct: 106615 ggcccttcttcctccctcgcc 106635
>gb|BC048969.1| Homo sapiens TSPY-like 1, mRNA (cDNA clone MGC:57205 IMAGE:5297724), complete cds Length = 3259 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ggcccttcttcctccctcgcc 236 ||||||||||||||||||||| Sbjct: 762 ggcccttcttcctccctcgcc 742
>emb|AL136629.1|HSM801602 Homo sapiens mRNA; cDNA DKFZp564D152 (from clone DKFZp564D152) Length = 3229 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ggcccttcttcctccctcgcc 236 ||||||||||||||||||||| Sbjct: 760 ggcccttcttcctccctcgcc 740
>dbj|AK095123.1| Homo sapiens cDNA FLJ37804 fis, clone BRSSN2001213, highly similar to Homo sapiens squamous cell carcinoma antigen recognized by T cell (SART-2) mRNA Length = 2667 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ggcccttcttcctccctcgcc 236 ||||||||||||||||||||| Sbjct: 30 ggcccttcttcctccctcgcc 50
>emb|CR533535.1| Homo sapiens full open reading frame cDNA clone RZPDo834G0419D for gene TSPYL, TSPY-like; complete cds, incl. stopcodon Length = 1392 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ggcccttcttcctccctcgcc 236 ||||||||||||||||||||| Sbjct: 662 ggcccttcttcctccctcgcc 642
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 202 ctacttgaagaagaggcccttcttcctccctcgccgcttctcgacggcctgca 254 |||||||||||| |||| |||||| || |||| || |||||| || ||||||| Sbjct: 448592 ctacttgaagaaaaggctcttctttcttcctctcctcttctcaacagcctgca 448540 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 202 ctacttgaagaagaggcccttcttcctccctcgccgcttctcgacggcctgca 254 |||||||||||| |||| |||||| || |||| || |||||| || ||||||| Sbjct: 429973 ctacttgaagaaaaggctcttctttcttcctctcctcttctcaacagcctgca 429921
>gb|AC026956.20| Homo sapiens chromosome 15, clone RP11-597K23, complete sequence Length = 215520 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 tgaagaagaggcccttcttcc 227 ||||||||||||||||||||| Sbjct: 58682 tgaagaagaggcccttcttcc 58702
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 202 ctacttgaagaagaggcccttcttcctccctcgccgcttctcgacggcctgca 254 |||||||||||| |||| |||||| || |||| || |||||| || ||||||| Sbjct: 181811 ctacttgaagaaaaggctcttctttcttcctctcctcttctcaacagcctgca 181759
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 202 ctacttgaagaagaggcccttcttcctccctcgccgcttctcgacggcctgca 254 |||||||||||| |||| |||||| || |||| || |||||| || ||||||| Sbjct: 88793 ctacttgaagaaaaggctcttctttcttcctctcctcttctcaacagcctgca 88741 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 202 ctacttgaagaagaggcccttcttcctccctcgccgcttctcgacggcctgca 254 |||||||||||| |||| |||||| || |||| || |||||| || ||||||| Sbjct: 70174 ctacttgaagaaaaggctcttctttcttcctctcctcttctcaacagcctgca 70122
>emb|CT025700.16| Mouse DNA sequence from clone RP24-151J17 on chromosome 17, complete sequence Length = 178486 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 ctgtcaggctatctatctatc 129 ||||||||||||||||||||| Sbjct: 39329 ctgtcaggctatctatctatc 39309
>gb|AC165368.5| Mus musculus BAC clone RP23-28L24 from chromosome 1, complete sequence Length = 216981 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 ttgttgttattgaaagtaata 497 ||||||||||||||||||||| Sbjct: 128536 ttgttgttattgaaagtaata 128556
>ref|XM_631723.1| Dictyostelium discoideum hypothetical protein (DDB0191137), partial mRNA Length = 1599 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 aaactgatcatgttgttgtt 484 |||||||||||||||||||| Sbjct: 1031 aaactgatcatgttgttgtt 1050
>gb|AC163748.6| Mus musculus BAC clone RP23-411N10 from chromosome 9, complete sequence Length = 226254 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 ctgtcaggctatctatctatcacc 132 ||||||||||||| |||||||||| Sbjct: 59944 ctgtcaggctatccatctatcacc 59967
>gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome 12, complete sequence Length = 182276 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gaagaggcccttcttcctcc 230 |||||||||||||||||||| Sbjct: 69099 gaagaggcccttcttcctcc 69118
>gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, complete sequence Length = 211178 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 tgttgttgttattgaaagta 494 |||||||||||||||||||| Sbjct: 36094 tgttgttgttattgaaagta 36113
>emb|AL132981.12|HSDJ80L13 Human DNA sequence from clone RP1-80L13 on chromosome 20 Contains STSs and GSSs, complete sequence Length = 112186 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tagtagtagtagtagggtct 392 |||||||||||||||||||| Sbjct: 104295 tagtagtagtagtagggtct 104314
>gb|AC157798.5| Mus musculus chromosome 1, clone RP24-153N24, complete sequence Length = 163087 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 ctatctatctatcaccacca 136 |||||||||||||||||||| Sbjct: 86001 ctatctatctatcaccacca 86020
>emb|AL031116.2|HS878O8 Human DNA sequence from clone RP5-878O8 on chromosome Xq21.1-21.33 Contains the CPXCR1 gene for CPX chromosome region, candidate 1, complete sequence Length = 130718 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 aacatacacaagcatctcaa 275 |||||||||||||||||||| Sbjct: 88446 aacatacacaagcatctcaa 88427
>emb|X74480.1|HPV49 Human papillomavirus type 49 genomic DNA Length = 7560 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 aactgatcatgttgttgtta 485 |||||||||||||||||||| Sbjct: 4835 aactgatcatgttgttgtta 4854
>emb|AJ272500.1|DDI272500 Dictyostelium discoideum mRNA for mitochondrial apoptosis inducing factor (aif gene) Length = 1669 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 aaactgatcatgttgttgtt 484 |||||||||||||||||||| Sbjct: 1075 aaactgatcatgttgttgtt 1094
>gb|AC161575.3| Mus musculus chromosome 15, clone RP24-264K6, complete sequence Length = 164213 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 tgttgttgttattgaaagta 494 |||||||||||||||||||| Sbjct: 36171 tgttgttgttattgaaagta 36190
>emb|BX005353.8| Zebrafish DNA sequence from clone DKEY-28D10, complete sequence Length = 212169 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 tgttgttgttattgaaagta 494 |||||||||||||||||||| Sbjct: 51557 tgttgttgttattgaaagta 51538
>gb|AF521961.1| Helianthus annuus translation initiation factor B04 mRNA, complete cds Length = 621 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 449 ttcatgatgaccaaacaaactgat 472 ||||| |||||||||||||||||| Sbjct: 585 ttcattatgaccaaacaaactgat 562
>gb|AC022113.6| Homo sapiens chromosome 5 clone CTC-461F20, complete sequence Length = 188570 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 aggcccttcttcctccctcg 234 |||||||||||||||||||| Sbjct: 86997 aggcccttcttcctccctcg 87016
>gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chromosome unknown, complete sequence Length = 182200 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 aggcccttcttcctccctcg 234 |||||||||||||||||||| Sbjct: 40997 aggcccttcttcctccctcg 41016
>gb|AC114625.11| Mus musculus chromosome 3, clone RP24-107N14, complete sequence Length = 160025 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ttcttgttagtagtagtagt 385 |||||||||||||||||||| Sbjct: 151210 ttcttgttagtagtagtagt 151229
>gb|AC062037.5| Homo sapiens BAC clone RP11-717A5 from 2, complete sequence Length = 87387 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 agaggcccttcttcctccctcgcc 236 |||||||| ||||||||||||||| Sbjct: 76119 agaggcccctcttcctccctcgcc 76096
>gb|AC164651.3| Ornithorhynchus anatinus BAC clone OABb-375A1 from chromosome unknown, complete sequence Length = 183178 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 aagtaatagcagtagtagat 509 |||||||||||||||||||| Sbjct: 4039 aagtaatagcagtagtagat 4058
>dbj|AP002884.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-356J5, complete sequence Length = 165678 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 agaagaggcccttcttcctc 229 |||||||||||||||||||| Sbjct: 74042 agaagaggcccttcttcctc 74023
>emb|AL772310.27| Mouse DNA sequence from clone RP23-34B24 on chromosome 4, complete sequence Length = 211901 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 cttgttagtagtagtagtag 387 |||||||||||||||||||| Sbjct: 63442 cttgttagtagtagtagtag 63461
>dbj|AB042297.1| Homo sapiens PTS gene for 6-pyruvoyltetrahydropterin synthase, complete cds Length = 85084 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 agaagaggcccttcttcctc 229 |||||||||||||||||||| Sbjct: 14296 agaagaggcccttcttcctc 14277
>emb|BX276127.6| Zebrafish DNA sequence from clone CH211-80M22 in linkage group 20, complete sequence Length = 149775 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 tgttgttgttattgaaagta 494 |||||||||||||||||||| Sbjct: 123149 tgttgttgttattgaaagta 123168
>dbj|AP006077.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT46B01, TM0116, complete sequence Length = 121207 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 aacaaactgatcatgttgttgtta 485 ||||||||||||||| |||||||| Sbjct: 81040 aacaaactgatcatgatgttgtta 81017 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,607,817 Number of Sequences: 3902068 Number of extensions: 7607817 Number of successful extensions: 207111 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 206886 Number of HSP's gapped (non-prelim): 225 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)