>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 116  PHTTNCGLQGGTFRKETTPKCRHRPIRGSEFPLEQH 223
            P T + GL GGT    ++P     P +G ++P   H
Sbjct: 1678 PGTASAGLSGGTAASSSSPAANSGPTKGLQYPFPSH 1713

>FINC_BOVIN (P07589) Fibronectin (FN)|
          Length = 2265

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
 Frame = -2

Query: 479 GRRPWRWLCDALGQATEVVVRCSWAEPVA*CCLVAMAVWVAWQSGCGDRWQ*VLAGVK-T 303
           G+   RW CD + Q  +   R  +                      GD W+  L GV+  
Sbjct: 516 GQGRGRWKCDPVDQCQDSETRTFYQ--------------------IGDSWEKYLQGVRYQ 555

Query: 302 CFIFGRTDGDEACSLLE------GVVAALIVRR-AAPEETPILGSGDGGTSVS 165
           C+ +GR  G+ AC  L+      G V  +I    + P   PI  S    + +S
Sbjct: 556 CYCYGRGIGEWACQPLQTYPDTSGPVQVIITETPSQPNSHPIQWSAPESSHIS 608

>TRMD_COREF (Q8CY26) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 291

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 97  SPRRNEAAYDELWASRRHLQEGDDTEVP 180
           +P RN A +DEL    +H  EG+D ++P
Sbjct: 102 TPHRNVARHDELAGVDKHAYEGEDADLP 129

>RDRP_TMGMV (P18339) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa protein)|
            [Contains: Methyltransferase/RNA helicase (MT/HEL) (126
            kDa protein)]
          Length = 1609

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 320  LAGVKTCFIFGRTDGDEACSLLEGVVAALIVRRAAPEETPILGSGDGGTSV 168
            +AG+KTC  + R  GD    +   V+ A  +    P E  I G+  G  SV
Sbjct: 1426 IAGIKTCLWYQRKSGDVTTFIGNTVIIAACLGSMLPMEKVIKGAFCGDDSV 1476

>SP70_DICDI (P15269) Spore coat protein SP70 precursor (Beejin protein)|
          Length = 537

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 355 HATHTAMATRQHQATGSAQEHRTTTSVACPRASHNHLQGRRP-CIQD 492
           H T     T  H  TG +    T  +V CPR  H  ++G +  C+ D
Sbjct: 228 HTTTGGSTTGSHTTTGGSTTGPTCGNVNCPRGYHCEVRGSQAVCVAD 274

>DNAA_BRAJA (Q89W63) Chromosomal replication initiator protein dnaA|
          Length = 470

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 280 SVRPKMKQVFTPAKTHCHRSPHPDCHATHTAMATRQHQATGSA 408
           +VRP       PA     R+P P+  +T TA  +  H A G +
Sbjct: 84  AVRPVAPPKEAPAPVETRRAPAPELRSTATAPVSANHDALGGS 126

>ZN446_HUMAN (Q9NWS9) Zinc finger protein 446|
          Length = 450

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -3

Query: 376 PWPCGWHGSRGVAIGGSESWPG*KPVSSSDGPTATKLVP 260
           P P  W G  G A       PG  PV +   P  T+L P
Sbjct: 286 PGPAAWEGLSGAATPAPTVRPGTPPVPTQPTPAETRLEP 324

>IL21_CANFA (Q6L7I9) Interleukin-21 precursor (IL-21)|
          Length = 146

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 330 AVSLGRGENLFHLRTDRRRRSLFPS*RCRRGSHRPSCCS 214
           A + G  E + ++ T + +R L P+   RR  HRP+C S
Sbjct: 79  AANTGGNEQIINVLTKQLKRKLPPTNAGRRQKHRPACPS 117

>TRA2_DROME (P19018) Transformer-2 sex-determining protein|
          Length = 264

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 280 SVRPKMKQVFTPAKTHCHRSPHPDCHATHTAMATRQHQATGSAQEHRTTTSVACPRASHN 459
           S R K K+  + +      S H D  + +    +R+HQ + S +  R+ +S   P     
Sbjct: 14  SARYKHKRSASSSSAGTTSSGHKDRRSDYDYCGSRRHQRSSSRRRSRSRSSSESPPPEPR 73

Query: 460 HLQGR 474
           H  GR
Sbjct: 74  HRSGR 78

>BGAL_ASPNG (P29853) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
            (Tilactase) (Lactase-N)
          Length = 1006

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +1

Query: 334  RSPHPDCHATHTAMATRQHQATGSAQEHRTTTSVACPRA----SHNHLQGRRPCIQD 492
            R P   C +T T +    H+      +HRT+  + CPR     S N L G  P   D
Sbjct: 917  RHPRTACRSTSTDIVCEIHK------QHRTSDQLPCPRGNPELSRNELVGGDPVALD 967

>OXAA_HELHP (Q7VJY0) Inner membrane protein oxaA|
          Length = 591

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 334 RSPHPDCHATHTAMATRQHQATGSAQEHRTTTSVACPRASHNHLQGRRPCIQD 492
           + PH + H  HTA  T+  Q +  A  H   T +    A H ++Q     +Q+
Sbjct: 36  QKPHQNTHQAHTAQNTQDTQESIQASTH---TEINTQVAPHQNIQDSTQSVQN 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,064,973
Number of Sequences: 219361
Number of extensions: 1665357
Number of successful extensions: 5055
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5053
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)