>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds
          Length = 20754

 Score =  127 bits (64), Expect = 4e-26
 Identities = 199/244 (81%)
 Strand = Plus / Minus

                                                                         
Query: 98    caccgcgaagaaatgaagccgcatacgacgaactgtgggcttcaaggcggcaccttcagg 157
             |||| |||||| ||| |||||||||||||||   ||||||  |||| |||  ||||||| 
Sbjct: 17122 caccacgaagagatgcagccgcatacgacgagtcgtgggccccaagacggtgccttcaga 17063

                                                                         
Query: 158   aaggagacgacaccgaagtgccgccatcgcccgatccgaggatcggagtttcctctggag 217
             ||||  ||||||| | || || |||| ||||| |||||||||||   |||||| | ||| 
Sbjct: 17062 aagggtacgacacgggagcgctgccaccgcccaatccgaggatcaaggtttcccccggaa 17003

                                                                         
Query: 218   cagcacgacggacgatgagagccgcgacgacaccttcaagaagggaacaagcttcgtcgc 277
             |  |||||| ||| ||||||||||| ||||| ||||||||||| |||| |||| ||  ||
Sbjct: 17002 ccacacgacagacaatgagagccgcaacgacgccttcaagaagagaacgagctacgctgc 16943

                                                                         
Query: 278   cgtcggtccgtccgaagatgaaacaggttttcaccccggccaagactcactgccaccgat 337
             || ||||| ||||||||||  | |||||||||||||||||||| ||||||||||| ||| 
Sbjct: 16942 cggcggtctgtccgaagatagagcaggttttcaccccggccaatactcactgccatcgaa 16883

                 
Query: 338   cgcc 341
             ||||
Sbjct: 16882 cgcc 16879



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 362   cccacacggccatggccaccaggcagcatcaagccacgggctctgcccaagagcatcgca 421
             |||||||||||||||||||| || |||| ||||| |||||||||||||  ||||| ||| 
Sbjct: 16877 cccacacggccatggccaccgggaagcaccaagcgacgggctctgcccgtgagcaccgcg 16818

                     
Query: 422   caaccacc 429
             ||||||||
Sbjct: 16817 caaccacc 16810

>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece
          Length = 120562

 Score =  123 bits (62), Expect = 6e-25
 Identities = 248/310 (80%)
 Strand = Plus / Plus

                                                                         
Query: 62    ctacaagagcaaccaggggctcaaccgggaaaatgtcaccgcgaagaaatgaagccgcat 121
             |||||||||||  | ||||| |||||  ||| ||| ||| | |||||||||||| |||||
Sbjct: 33092 ctacaagagcagtcgggggcccaaccatgaacatgccacggtgaagaaatgaagtcgcat 33151

                                                                         
Query: 122   acgacgaactgtgggcttcaaggcggcaccttcaggaaggagacgacaccgaagtgccgc 181
             | ||||||  ||||  || |||||| | |||| |||||||| ||||||||  || ||  |
Sbjct: 33152 atgacgaatcgtggattttaaggcgacgcctttaggaaggatacgacaccagagcgcttc 33211

                                                                         
Query: 182   catcgcccgatccgaggatcggagtttcctctggagcagcacgacggacgatgagagccg 241
             || |||||||| || ||||| |||| ||| || ||||| |||||||| | ||||||||||
Sbjct: 33212 caccgcccgattcgcggatcagagtatcccctagagcaacacgacgggcaatgagagccg 33271

                                                                         
Query: 242   cgacgacaccttcaagaagggaacaagcttcgtcgccgtcggtccgtccgaagatgaaac 301
             ||| ||| |||| ||||||||||| | ||||| | ||| |||||| |||||||||    |
Sbjct: 33272 cgatgacgcctttaagaagggaacgaacttcgccaccgccggtccatccgaagatagggc 33331

                                                                         
Query: 302   aggttttcaccccggccaagactcactgccaccgatcgccacaccccgactgccatgcca 361
               |||||||||| |||||| |||||| |||||||   ||||||||||| || ||| | ||
Sbjct: 33332 gcgttttcaccctggccaacactcaccgccaccggatgccacaccccggctaccacgtca 33391

                       
Query: 362   cccacacggc 371
              |||||||||
Sbjct: 33392 gccacacggc 33401

>ref|XM_511829.1| PREDICTED: Pan troglodytes similar to KIAA0672 gene product
            (LOC455062), mRNA
          Length = 4371

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 71   caaccaggggctcaaccggga 91
            |||||||||||||||||||||
Sbjct: 3346 caaccaggggctcaaccggga 3366

>emb|AJ002967.1|RNAJ2967 Rattus norvegicus mRNA for utrophin
          Length = 10705

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 200  tcggagtttcctctggagcag 220
            |||||||||||||||||||||
Sbjct: 4463 tcggagtttcctctggagcag 4443

>gb|AE012369.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 277
            of 460 of the complete genome
          Length = 10540

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 96   gtcaccgcgaagaaatgaagc 116
            |||||||||||||||||||||
Sbjct: 9727 gtcaccgcgaagaaatgaagc 9747

>gb|AC155242.2| Mus musculus BAC clone RP24-496G24 from chromosome 17, complete
             sequence
          Length = 132408

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   gatcggagtttcctctggagc 218
             |||||||||||||||||||||
Sbjct: 28718 gatcggagtttcctctggagc 28738

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 96      gtcaccgcgaagaaatgaagc 116
               |||||||||||||||||||||
Sbjct: 1850897 gtcaccgcgaagaaatgaagc 1850877

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 11       gatacaaactgatatacacacacac 35
                |||||||||| ||||||||||||||
Sbjct: 13262860 gatacaaactcatatacacacacac 13262884

>ref|NM_013070.1| Rattus norvegicus utrophin (Utrn), mRNA
          Length = 10705

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 200  tcggagtttcctctggagcag 220
            |||||||||||||||||||||
Sbjct: 4463 tcggagtttcctctggagcag 4443

>ref|XM_219677.3| PREDICTED: Rattus norvegicus similar to hypothetical protein BC019095
            (predicted) (LOC293822), mRNA
          Length = 8817

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  ccaccgatcgccacaccccgactgc 354
            ||||||||||||||||||| |||||
Sbjct: 2975 ccaccgatcgccacacccccactgc 2951

>emb|BX004773.11| Zebrafish DNA sequence from clone DKEY-13D19, complete sequence
          Length = 245924

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 291    gaagatgaaacaggttttcac 311
              |||||||||||||||||||||
Sbjct: 155314 gaagatgaaacaggttttcac 155294

>dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0622F08
          Length = 140628

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 11    gatacaaactgatatacacacacac 35
             |||||||||| ||||||||||||||
Sbjct: 70787 gatacaaactcatatacacacacac 70811

>ref|XM_881703.1| PREDICTED: Bos taurus similar to vacuolar protein sorting 39,
            transcript variant 6 (LOC520990), mRNA
          Length = 2553

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  gagtttcctctggagcagca 222
            ||||||||||||||||||||
Sbjct: 2267 gagtttcctctggagcagca 2286

>ref|XM_868484.1| PREDICTED: Bos taurus similar to vacuolar protein sorting 39,
            transcript variant 2 (LOC520990), mRNA
          Length = 4614

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  gagtttcctctggagcagca 222
            ||||||||||||||||||||
Sbjct: 4328 gagtttcctctggagcagca 4347

>gb|AC154384.2| Mus musculus BAC clone RP23-39K21 from chromosome 14, complete sequence
          Length = 242114

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    gactgccatgccacccacac 368
              ||||||||||||||||||||
Sbjct: 217137 gactgccatgccacccacac 217118

>gb|AC027119.5| Homo sapiens chromosome 3 clone RP11-113L10 map 3p, complete sequence
          Length = 175590

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    gtggcttgcccaagagcatc 452
              ||||||||||||||||||||
Sbjct: 161715 gtggcttgcccaagagcatc 161734

>gb|AC152937.21| Medicago truncatula clone mth2-96n6, complete sequence
          Length = 108802

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aagaagggaacaagcttcgt 274
             ||||||||||||||||||||
Sbjct: 28384 aagaagggaacaagcttcgt 28365

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 337     tcgccacaccccgactgccatgcc 360
               ||||||||||||||| ||||||||
Sbjct: 4592356 tcgccacaccccgaccgccatgcc 4592379

>gb|AY010120.2| Xanthomonas oryzae pv. oryzae xanthomonadin biosynthetic gene cluster,
             partial seqence
          Length = 20310

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 337   tcgccacaccccgactgccatgcc 360
             ||||||||||||||| ||||||||
Sbjct: 14038 tcgccacaccccgaccgccatgcc 14061

>emb|BX530060.6| Zebrafish DNA sequence from clone DKEY-283F16 in linkage group 16,
              complete sequence
          Length = 174837

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 22     atatacacacacacccaaggcatgatac 49
              |||||||||||||| ||| |||||||||
Sbjct: 167843 atatacacacacacacaaagcatgatac 167816

>gb|AC131183.4| Mus musculus BAC clone RP23-225A14 from chromosome 12, complete
             sequence
          Length = 141293

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    gatacaaactgatatacacacaca 34
             ||||||||| ||||||||||||||
Sbjct: 21940 gatacaaacagatatacacacaca 21917

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     gacgacaccttcaagaaggg 262
               ||||||||||||||||||||
Sbjct: 2754156 gacgacaccttcaagaaggg 2754137

>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0009G03
          Length = 163526

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   gacgacaccttcaagaaggg 262
             ||||||||||||||||||||
Sbjct: 59833 gacgacaccttcaagaaggg 59814

>gb|AC147245.3| Mus musculus BAC clone RP23-462E12 from 12, complete sequence
          Length = 179735

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    gatacaaactgatatacacacaca 34
             ||||||||| ||||||||||||||
Sbjct: 71100 gatacaaacagatatacacacaca 71123

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 337     tcgccacaccccgactgccatgcc 360
               ||||||||||||||| ||||||||
Sbjct: 4597119 tcgccacaccccgaccgccatgcc 4597142

>gb|AC153915.5| Mus musculus 10 BAC RP23-329D23 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207169

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   tggccaccaggcagcatcaa 393
             ||||||||||||||||||||
Sbjct: 88685 tggccaccaggcagcatcaa 88704

>emb|AL772152.16| Mouse DNA sequence from clone RP23-157O1 on chromosome 4, complete
             sequence
          Length = 195937

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    atacaaactgatatacacacacac 35
             ||||||||||| ||||||||||||
Sbjct: 25898 atacaaactgaaatacacacacac 25875

>gb|AC153022.1| Mus musculus 6 BAC RP23-115M13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 201949

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    tggccaccaggcagcatcaa 393
              ||||||||||||||||||||
Sbjct: 191867 tggccaccaggcagcatcaa 191886

>emb|CT027693.11| Mouse DNA sequence from clone RP24-120H1 on chromosome 16, complete
             sequence
          Length = 186376

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   cacccacacggccatggcca 379
             ||||||||||||||||||||
Sbjct: 92082 cacccacacggccatggcca 92101

>emb|AL845471.7| Mouse DNA sequence from clone RP23-320N1 on chromosome 2, complete
              sequence
          Length = 127825

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    cacgggctctgcccaagagc 415
              ||||||||||||||||||||
Sbjct: 121294 cacgggctctgcccaagagc 121275

>emb|AL611984.15| Mouse DNA sequence from clone RP23-416J8 on chromosome 4, complete
             sequence
          Length = 209904

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    atacacacacacccaaggca 43
             ||||||||||||||||||||
Sbjct: 39537 atacacacacacccaaggca 39518


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,338,477
Number of Sequences: 3902068
Number of extensions: 4338477
Number of successful extensions: 143673
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143383
Number of HSP's gapped (non-prelim): 289
length of query: 504
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 482
effective length of database: 17,147,199,772
effective search space: 8264950290104
effective search space used: 8264950290104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)