>ATG8_LACBI (P87068) Autophagy-related protein 8 precursor (Autophagy-related|
           ubiquitin-like modifier ATG8)
          Length = 184

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 206 WIQLRTSDEEKASSCVIANQQPW*WLSCTYNIDHVSCLYIM 84
           W++L   D +KA  CV A ++ W W+ C     + +C+ I+
Sbjct: 120 WVELPVDDMDKAFICVSAAKKHWVWVLCDVRSSYQNCVLIV 160

>KV3O_MOUSE (P01667) Ig kappa chain V-III region PC 6308|
          Length = 111

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -3

Query: 311 WGQARPQGPTYRSV--ASTTASDPPARDSTLGSSTSCWIQLRTSDEEKASS--CVIANQQ 144
           W Q +P  P    +  AS   S  PAR S  GS T   + +   +EE A++  C  +N+ 
Sbjct: 39  WYQQKPGQPPKLLIYTASNLESGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNED 98

Query: 143 PW 138
           PW
Sbjct: 99  PW 100

>KV3Q_MOUSE (P01669) Ig kappa chain V-III region PC 7769|
          Length = 111

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -3

Query: 311 WGQARPQGPTYRSV--ASTTASDPPARDSTLGSSTSCWIQLRTSDEEKASS--CVIANQQ 144
           W Q +P  P    +  AS   S  PAR S  GS T   + +   +EE A++  C  +N+ 
Sbjct: 39  WYQQKPGQPPKVLIFAASNLESGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNED 98

Query: 143 PW 138
           PW
Sbjct: 99  PW 100

>NCBP1_YEAST (P34160) Nuclear cap-binding protein complex subunit 1 (Protein|
           GCR3) (Protein STO1) (Protein SUT1)
          Length = 861

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = +2

Query: 71  PVYRALCTNTTRDLCYTYMTTT------TKAADLL*HMS*LFLHQMYVVESSSLCLIREL 232
           P+  A+ TNT  ++ Y +          TK  +LL      ++ Q Y+V+++ + L+RE 
Sbjct: 190 PLSEAIYTNTLLNIPYLFFFNRNNDGLRTKVEELL-----AYVEQNYLVKTTDINLLREY 244

Query: 233 NRGRVDQKPS*KPPNDMLALVDAPAP 310
           N          +PP +M+ LV    P
Sbjct: 245 NG---------EPPYEMVELVRVVLP 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,618,339
Number of Sequences: 219361
Number of extensions: 1312087
Number of successful extensions: 3192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3191
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)