ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22j14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full... 224 3e-55
2gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 74 7e-10
3gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 58 4e-05
4gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 58 4e-05
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
6dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
7dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 58 4e-05
9dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
10gb|AY107519.1| Zea mays PCO078033 mRNA sequence 50 0.010
11gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.039
12gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.15
13gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.15
14emb|X68127.1|MARIREDM2 M.auratus mRNA for ribonucleotide reducta... 44 0.61
15ref|XM_222462.2| PREDICTED: Rattus norvegicus similar to M2 ribo... 44 0.61
16emb|AL118556.4|CNS01DRR Human chromosome 14 DNA sequence BAC R-4... 44 0.61
17gb|BC099082.1| Rattus norvegicus ribonucleotide reductase M2 (ma... 44 0.61
18ref|NM_001025740.1| Rattus norvegicus ribonucleotide reductase M... 44 0.61
19gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, com... 42 2.4
20emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 2.4
21gb|AC127366.4| Mus musculus BAC clone RP23-10E9 from 8, complete... 42 2.4
22ref|XM_640451.1| Dictyostelium discoideum hypothetical protein (... 40 9.5
23emb|X69947.1|PHPMADS2 P.hybrida mRNA for pmads 2 40 9.5
24emb|X71417.1|PHFBP3 P.hybrida fbp3 mRNA 40 9.5
25emb|AJ632306.1| Cotesia congregata virus complete genome, segmen... 40 9.5
26gb|AC109631.4| Homo sapiens chromosome , clone RP11-9J12, comple... 40 9.5
27gb|AC069381.8| Homo sapiens chromosome 15, clone RP11-604N3, com... 40 9.5
28gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643... 40 9.5
29gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complet... 40 9.5
30emb|AL732482.8| Mouse DNA sequence from clone RP23-199C21 on chr... 40 9.5 
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score =  224 bits (113), Expect = 3e-55
 Identities = 212/245 (86%)
 Strand = Plus / Minus

                                                                       
Query: 448 actatatctatgacaataacctttccccccatttcgcgtgacggaatggccttcttgcat 507
           ||||| |||||||  || || ||||| |||||||| || || || |||||||||||||||
Sbjct: 325 actatgtctatgatgatcacttttcctcccatttctcgggaaggtatggccttcttgcat 266

                                                                       
Query: 508 tgagccagaatattgatgcaatcttcatcactccagaagtgcagaacaagcttaagcatg 567
           ||||| || || ||||||||||| || || ||||||||||| ||||||||||| ||||||
Sbjct: 265 tgagcgaggatcttgatgcaatcctcgtcgctccagaagtgtagaacaagcttgagcatg 206

                                                                       
Query: 568 agaacttgagcaggtggaatagcatggaataggtcaccagcgacatagttaacgatacca 627
           |   | ||||| ||||| |  | |||||| ||||||||||||||||||||||| | ||||
Sbjct: 205 acggcctgagctggtgggacggtatggaagaggtcaccagcgacatagttaacaacacca 146

                                                                       
Query: 628 tcacttggaactttctcgatcaccttcggaaggtccaacacattacacttgatatgcggg 687
           |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 145 tcacttgggactttctcgatcacctttggaaggtccaacacattgcacttgatatgcggg 86

                
Query: 688 aaggc 692
           |||||
Sbjct: 85  aaggc 81



 Score =  143 bits (72), Expect = 9e-31
 Identities = 126/144 (87%)
 Strand = Plus / Minus

                                                                       
Query: 260 cttatggatagacctcgatgacacctcgaggtcccagtttcttgacaattttatagccgc 319
           ||||||||||||||||||||||||||||| | || |||||||||||||| ||||||  ||
Sbjct: 513 cttatggatagacctcgatgacacctcgatggccaagtttcttgacaatcttatagttgc 454

                                                                       
Query: 320 taaatcctgcttttgtaaagattgtgctccagtcattttcatctcgttgacgtcctcttg 379
           |||| |||||||| |||||||| |||||||| || |||||||| ||||| |||||||| |
Sbjct: 453 taaaccctgctttcgtaaagatcgtgctccactccttttcatcccgttgccgtcctctgg 394

                                   
Query: 380 tacataccaacatgagcatatcca 403
           ||||||  ||||| ||||| ||||
Sbjct: 393 tacatatgaacatcagcatgtcca 370
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>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 268  tagacctcgatgacacctcgaggtcccagtttcttgacaattttatagccgctaaatcct 327
            ||||||||||| |||||||| |  |||||||||||||||||||| ||| ||||||| |||
Sbjct: 1132 tagacctcgataacacctcgtgcacccagtttcttgacaattttgtagtcgctaaaccct 1073

                 
Query: 328  gcttt 332
            |||||
Sbjct: 1072 gcttt 1068
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>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                          
Query: 600    gtcaccagcgacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 659
              |||||| || ||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 119655 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 119596

                                               
Query: 660    gtccaacacattacacttgatatgcgggaaggc 692
              ||||| |||| | ||||||| ||| ||| ||||
Sbjct: 119595 gtccagcacagtgcacttgacatgagggtaggc 119563



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 266   gatagacctcgatgacacctcgaggtcccagtttcttgacaattttatagccgctaaatc 325
             |||||||||||| |||| ||||||  || |||||||| ||||| |||||| | || ||||
Sbjct: 64473 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 64414

                  
Query: 326   ctgct 330
             |||||
Sbjct: 64413 ctgct 64409



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                          
Query: 256    caatcttatggatagacctcgatgacacctcgaggtcccagtttcttgacaattttatag 315
              |||||||| |||||||||||||  || ||||||| ||| ||  |||| ||||| ||||||
Sbjct: 123169 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 123110

                               
Query: 316    ccgctaaatcctgcttt 332
               |  | |||||||||||
Sbjct: 123109 tcattgaatcctgcttt 123093
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>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                        
Query: 600  gtcaccagcgacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 659
            |||||| || ||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 5404 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 5345

                                             
Query: 660  gtccaacacattacacttgatatgcgggaaggc 692
            ||||| |||| | ||||||| ||| ||| ||||
Sbjct: 5344 gtccagcacagtgcacttgacatgagggtaggc 5312



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 256  caatcttatggatagacctcgatgacacctcgaggtcccagtttcttgacaattttatag 315
            |||||||| |||||||||||||  || ||||||| ||| ||  |||| ||||| ||||||
Sbjct: 8918 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 8859

                             
Query: 316  ccgctaaatcctgcttt 332
             |  | |||||||||||
Sbjct: 8858 tcattgaatcctgcttt 8842
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                            
Query: 600      gtcaccagcgacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 659
                |||||| || ||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 11494133 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 11494192

                                                 
Query: 660      gtccaacacattacacttgatatgcgggaaggc 692
                ||||| |||| | ||||||| ||| ||| ||||
Sbjct: 11494193 gtccagcacagtgcacttgacatgagggtaggc 11494225



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 266      gatagacctcgatgacacctcgaggtcccagtttcttgacaattttatagccgctaaatc 325
                |||||||||||| |||| ||||||  || |||||||| ||||| |||||| | || ||||
Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11549374

                     
Query: 326      ctgct 330
                |||||
Sbjct: 11549375 ctgct 11549379



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 265      ggatagacctcgatgacacctcgaggtcccagtttcttgacaat 308
                ||||||||||| |||||||  |||||||||| |||||| |||||
Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaat 11294574



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 262      tatggatagacctcgatgacacctcgaggtcccagtttcttgacaat 308
                ||||| |||||||| | ||| ||||||| |||||||||||| |||||
Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaat 11353932



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 643     tcgatcaccttcggaaggtccaacacattacacttgatatgcgggaa 689
               |||||||||||||| ||||||| |||  | |||||||| ||||||||
Sbjct: 7138295 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 7138341



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                            
Query: 256      caatcttatggatagacctcgatgacacctcgaggtcccagtttcttgacaattttatag 315
                |||||||| |||||||||||||  || ||||||| ||| ||  |||| ||||| ||||||
Sbjct: 11490619 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11490678

                                 
Query: 316      ccgctaaatcctgcttt 332
                 |  | |||||||||||
Sbjct: 11490679 tcattgaatcctgcttt 11490695



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 572     cttgagcaggtggaatagcatggaataggtcaccagcgacatagttaac 620
               ||||||||||||| | |||||| || | |||||| || |||||||||||
Sbjct: 7138221 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 7138269
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>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
           insert sequence
          Length = 1362

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                       
Query: 600 gtcaccagcgacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 659
           |||||| || ||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 815 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 756

                                            
Query: 660 gtccaacacattacacttgatatgcgggaaggc 692
           ||||| |||| | ||||||| ||| ||| ||||
Sbjct: 755 gtccagcacagtgcacttgacatgagggtaggc 723



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 256  caatcttatggatagacctcgatgacacctcgaggtcccagtttcttgacaattttatag 315
            |||||||| |||||||||||||  || ||||||| ||| ||  |||| ||||| ||||||
Sbjct: 1162 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1103

                             
Query: 316  ccgctaaatcctgcttt 332
             |  | |||||||||||
Sbjct: 1102 tcattgaatcctgcttt 1086
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>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
           insert sequence
          Length = 1264

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                       
Query: 600 gtcaccagcgacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 659
           |||||| || ||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 820 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 761

                                            
Query: 660 gtccaacacattacacttgatatgcgggaaggc 692
           ||||| |||| | ||||||| ||| ||| ||||
Sbjct: 760 gtccagcacagtgcacttgacatgagggtaggc 728



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 256  caatcttatggatagacctcgatgacacctcgaggtcccagtttcttgacaattttatag 315
            |||||||| |||||||||||||  || ||||||| ||| ||  |||| ||||| ||||||
Sbjct: 1167 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1108

                             
Query: 316  ccgctaaatcctgcttt 332
             |  | |||||||||||
Sbjct: 1107 tcattgaatcctgcttt 1091
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                            
Query: 600      gtcaccagcgacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 659
                |||||| || ||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 11573322 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 11573381

                                                 
Query: 660      gtccaacacattacacttgatatgcgggaaggc 692
                ||||| |||| | ||||||| ||| ||| ||||
Sbjct: 11573382 gtccagcacagtgcacttgacatgagggtaggc 11573414



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 266      gatagacctcgatgacacctcgaggtcccagtttcttgacaattttatagccgctaaatc 325
                |||||||||||| |||| ||||||  || |||||||| ||||| |||||| | || ||||
Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11628563

                     
Query: 326      ctgct 330
                |||||
Sbjct: 11628564 ctgct 11628568



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 265      ggatagacctcgatgacacctcgaggtcccagtttcttgacaat 308
                ||||||||||| |||||||  |||||||||| |||||| |||||
Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaat 11373763



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 262      tatggatagacctcgatgacacctcgaggtcccagtttcttgacaat 308
                ||||| |||||||| | ||| ||||||| |||||||||||| |||||
Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaat 11433121



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 643     tcgatcaccttcggaaggtccaacacattacacttgatatgcgggaa 689
               |||||||||||||| ||||||| |||  | |||||||| ||||||||
Sbjct: 7204266 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 7204312



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                            
Query: 256      caatcttatggatagacctcgatgacacctcgaggtcccagtttcttgacaattttatag 315
                |||||||| |||||||||||||  || ||||||| ||| ||  |||| ||||| ||||||
Sbjct: 11569808 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11569867

                                 
Query: 316      ccgctaaatcctgcttt 332
                 |  | |||||||||||
Sbjct: 11569868 tcattgaatcctgcttt 11569884



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 572     cttgagcaggtggaatagcatggaataggtcaccagcgacatagttaac 620
               ||||||||||||| | |||||| || | |||||| || |||||||||||
Sbjct: 7204192 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 7204240
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>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 86/106 (81%)
 Strand = Plus / Minus

                                                                       
Query: 526 caatcttcatcactccagaagtgcagaacaagcttaagcatgagaacttgagcaggtgga 585
           ||||| || |||||||||  ||| || |||||||| ||||||| | ||||||||||||| 
Sbjct: 906 caatcctcgtcactccagtggtgaagcacaagcttgagcatgacagcttgagcaggtggg 847

                                                         
Query: 586 atagcatggaataggtcaccagcgacatagttaacgataccatcac 631
           || ||  |||| | |||||| || |||||||| || | ||||||||
Sbjct: 846 atggcgcggaacatgtcacccgctacatagttcaccacaccatcac 801
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>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 263  atggatagacctcgatgacacctcgaggtcccagtttcttgacaa 307
            |||| ||||||||||||||||| |||| ||| | |||||||||||
Sbjct: 1107 atgggtagacctcgatgacaccacgagctccgattttcttgacaa 1063
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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0015P05 map C53961S, complete sequence
          Length = 175121

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 265   ggatagacctcgatgacacctcgaggtcccagtttcttgacaat 308
             ||||||||||| |||||||  |||||||||| |||||| |||||
Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaat 80932



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 262    tatggatagacctcgatgacacctcgaggtcccagtttcttgacaat 308
              ||||| |||||||| | ||| ||||||| |||||||||||| |||||
Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaat 140290
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>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 643   tcgatcaccttcggaaggtccaacacattacacttgatatgcgggaa 689
             |||||||||||||| ||||||| |||  | |||||||| ||||||||
Sbjct: 44260 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 44214



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 572   cttgagcaggtggaatagcatggaataggtcaccagcgacatagttaac 620
             ||||||||||||| | |||||| || | |||||| || |||||||||||
Sbjct: 44334 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 44286
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>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 643   tcgatcaccttcggaaggtccaacacattacacttgatatgcgggaa 689
             |||||||||||||| ||||||| |||  | |||||||| ||||||||
Sbjct: 51515 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 51561



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 572   cttgagcaggtggaatagcatggaataggtcaccagcgacatagttaac 620
             ||||||||||||| | |||||| || | |||||| || |||||||||||
Sbjct: 51441 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 51489
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>emb|X68127.1|MARIREDM2 M.auratus mRNA for ribonucleotide reductase M2 subunit
          Length = 3481

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 507 ttgagccagaatattgatgcaa 528
           ||||||||||||||||||||||
Sbjct: 897 ttgagccagaatattgatgcaa 876
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>ref|XM_222462.2| PREDICTED: Rattus norvegicus similar to M2 ribonucleotide reductase
           (LOC304657), mRNA
          Length = 1109

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 507 ttgagccagaatattgatgcaa 528
           ||||||||||||||||||||||
Sbjct: 679 ttgagccagaatattgatgcaa 658
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>emb|AL118556.4|CNS01DRR Human chromosome 14 DNA sequence BAC R-406H23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170597

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 26     cacatacataaacccatacaac 47
              ||||||||||||||||||||||
Sbjct: 144778 cacatacataaacccatacaac 144799
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>gb|BC099082.1| Rattus norvegicus ribonucleotide reductase M2 (mapped), mRNA (cDNA
           clone MGC:116120 IMAGE:7443729), complete cds
          Length = 2563

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 507 ttgagccagaatattgatgcaa 528
           ||||||||||||||||||||||
Sbjct: 794 ttgagccagaatattgatgcaa 773
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>ref|NM_001025740.1| Rattus norvegicus ribonucleotide reductase M2 (mapped)
           (Rrm2_mapped), mRNA
          Length = 2563

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 507 ttgagccagaatattgatgcaa 528
           ||||||||||||||||||||||
Sbjct: 794 ttgagccagaatattgatgcaa 773
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>gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, complete sequence
          Length = 222682

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   tatcacttagctacttatact 141
             |||||||||||||||||||||
Sbjct: 10279 tatcacttagctacttatact 10259
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 590     catggaataggtcaccagcga 610
               |||||||||||||||||||||
Sbjct: 2863358 catggaataggtcaccagcga 2863338
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>gb|AC127366.4| Mus musculus BAC clone RP23-10E9 from 8, complete sequence
          Length = 177375

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   tatcacttagctacttatact 141
             |||||||||||||||||||||
Sbjct: 54454 tatcacttagctacttatact 54434
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>ref|XM_640451.1| Dictyostelium discoideum hypothetical protein (DDB0216860), partial
           mRNA
          Length = 2952

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 agtcattttcatctcgttga 369
           ||||||||||||||||||||
Sbjct: 246 agtcattttcatctcgttga 227
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>emb|X69947.1|PHPMADS2 P.hybrida mRNA for pmads 2
          Length = 971

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 560 taagcatgagaacttgagca 579
           ||||||||||||||||||||
Sbjct: 290 taagcatgagaacttgagca 309
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>emb|X71417.1|PHFBP3 P.hybrida fbp3 mRNA
          Length = 904

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 560 taagcatgagaacttgagca 579
           ||||||||||||||||||||
Sbjct: 291 taagcatgagaacttgagca 310
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>emb|AJ632306.1| Cotesia congregata virus complete genome, segment Circle3
          Length = 29874

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 243  tgcacttggcacacaatcttatgg 266
            |||||||||||| |||||||||||
Sbjct: 4793 tgcacttggcacgcaatcttatgg 4816
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>gb|AC109631.4| Homo sapiens chromosome , clone RP11-9J12, complete sequence
          Length = 172321

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     tttattgaaactaaaggtac 89
              ||||||||||||||||||||
Sbjct: 148492 tttattgaaactaaaggtac 148473
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>gb|AC069381.8| Homo sapiens chromosome 15, clone RP11-604N3, complete sequence
          Length = 191659

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     tttattgaaactaaaggtac 89
              ||||||||||||||||||||
Sbjct: 157437 tttattgaaactaaaggtac 157456
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>gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4,
             complete sequence
          Length = 256879

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   agtcattttcatctcgttga 369
             ||||||||||||||||||||
Sbjct: 11205 agtcattttcatctcgttga 11224
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>gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complete sequence
          Length = 217530

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 28    catacataaacccatacaactcacacca 55
             |||||||| ||||||||||| |||||||
Sbjct: 92220 catacatatacccatacaacccacacca 92247
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>emb|AL732482.8| Mouse DNA sequence from clone RP23-199C21 on chromosome 4, complete
              sequence
          Length = 191239

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 625    ccatcacttggaactttctc 644
              ||||||||||||||||||||
Sbjct: 149587 ccatcacttggaactttctc 149606


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,276,140
Number of Sequences: 3902068
Number of extensions: 5276140
Number of successful extensions: 97494
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97195
Number of HSP's gapped (non-prelim): 292
length of query: 692
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 669
effective length of database: 17,143,297,704
effective search space: 11468866163976
effective search space used: 11468866163976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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