>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = -3

Query: 480 NPSQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQNQ 319
           +PS+S  + ++RS+SP P R ++ + S SR +SRS S S  +S +P   Q   Q
Sbjct: 704 SPSRSVSRSISRSRSPAPIRGRSYSRSVSRSRSRSYSRSVSRSPTPPRRQAPAQ 757

>H6ST2_MOUSE (Q80UW0) Heparan-sulfate 6-O-sulfotransferase 2 (EC 2.8.2.-)|
           (HS6ST-2) (mHS6ST-2) (Fragment)
          Length = 538

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 18/51 (35%), Positives = 32/51 (62%)
 Frame = -3

Query: 471 QSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQNQ 319
           QS  Q  ++SQSP  +  QN NP+ ++  +++LS +   S +P+ TQ +N+
Sbjct: 457 QSQSQGQSQSQSPGQNLSQNPNPNPNQNLTQNLSHNLTPSSNPNSTQRENR 507

>CCNL2_XENTR (Q5BKF8) Cyclin-L2|
          Length = 497

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = -3

Query: 471 QSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSP 343
           QS  +  +RSQSP   + Q+ +PS     S+S SPSR +S SP
Sbjct: 370 QSYSRSQSRSQSPKRRKSQSYSPSS---DSKSRSPSRSRSDSP 409

>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22|
          Length = 954

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = -3

Query: 474 SQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 340
           S+S  + L+R ++ +P R +  + S SR  SRS S SR  S+SPS
Sbjct: 830 SRSRSRSLSRDRTGSPPRGRRRSRSYSRSPSRSYSRSRSYSRSPS 874

>UAFA_STAS1 (Q4A0V8) Uro-adherence factor A precursor|
          Length = 2316

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 22/55 (40%), Positives = 32/55 (58%)
 Frame = -3

Query: 486 TXNPSQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQN 322
           T + S S  + L+ SQS + S   +L+ S+S  QS SLS S   SQS SL+  ++
Sbjct: 810 TTSESLSLSESLSTSQSLSLSHSLSLSESESTSQSLSLSTSESLSQSLSLSASES 864



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/56 (33%), Positives = 34/56 (60%)
 Frame = -3

Query: 489  KTXNPSQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQN 322
            ++ + S+S  Q  + SQS + S  ++L+ S+S  +S SLS S   S S SL++ ++
Sbjct: 1721 ESLSTSESLRQSESLSQSLSLSASESLSASESISESESLSESESLSASESLSESES 1776



 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/56 (28%), Positives = 34/56 (60%)
 Frame = -3

Query: 489  KTXNPSQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQN 322
            ++ + S+S  +  + S+S + S  ++L+ S+S  +S SLS     SQS +L++ ++
Sbjct: 1301 ESLSESESLSESESLSESESLSASESLSESESLSESESLSARESLSQSEALSESES 1356

>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = -3

Query: 474 SQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 340
           S S  + L RS+S +PS  Q+ + S+SR QS S SP+R +   P+
Sbjct: 486 SPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPA 530

>PDE4A_DROME (Q9W4T4) cAMP-specific 3',5'-cyclic phosphodiesterase, isoform I|
           (EC 3.1.4.17) (Learning/memory process protein) (Protein
           dunce)
          Length = 1209

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 486 TXNPSQSXCQXLNRSQSPNPSRCQNLNPSQS--RCQSRSLSPSRCQSQSPSLTQCQNQ 319
           + NP QS  Q   ++ +PNP++  N NP+Q+  RC         CQ Q+  L   + +
Sbjct: 282 STNPCQSAVQNQGQNSNPNPNQNPNTNPNQNQQRCS--------CQPQTSPLPHIKEE 331

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
 Frame = -3

Query: 474 SQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRC---QSQSPS 340
           S+S  +  +RS+S + S   +   S+SR  SRS SPSRC   +S+SP+
Sbjct: 277 SRSRSRSRSRSRSRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRSPA 324

>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = -3

Query: 474 SQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 340
           S+S  +  +RS+SP P R +  + S+SR +SRS S    +S+SPS
Sbjct: 228 SRSSSRSKSRSRSP-PKRSRRESKSKSRSRSRSRSADNRKSRSPS 271

>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 480 NPSQSXCQXLNRSQSPN-PSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQN 322
           NP             PN P+  ++ + S S+ +SRS SPSR  S+SPS ++ ++
Sbjct: 432 NPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRS 485

>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55)
          Length = 344

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -3

Query: 474 SQSXCQXLNRSQSP---NPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 340
           S+S  +  +RS SP    PS+ ++++P   R  SRS S SR +S+S S
Sbjct: 291 SKSRSRSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRS 338

>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)|
            (c-Cbl-associated protein) (CAP) (SH3 domain protein 5)
            (SH3P12)
          Length = 1290

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 438  SPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQNQ 319
            S +PSR   ++P Q + Q R ++P R Q   PSL  C  Q
Sbjct: 1199 SSSPSRSATVSPQQPQAQQRRVTPDRSQ---PSLDLCSYQ 1235

>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = -3

Query: 474 SQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 340
           S+S      R  SP  S  ++ + S+SR +SRS S SR  S+SPS
Sbjct: 212 SRSRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSPS 256

>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = -3

Query: 444 SQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 340
           S S +PSR +++  S SR QSRS S S+  SQS S
Sbjct: 476 SWSLSPSRSRSVTRSGSRSQSRSRSRSQSHSQSQS 510

>NCAP_CVCAE (Q04700) Nucleocapsid protein (N structural protein) (NC)|
          Length = 382

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -3

Query: 432 NPSRCQNLNPSQSRCQSRSLSPSRCQSQS 346
           N SR  + +PSQSR QSR+ S SR + QS
Sbjct: 154 NQSRDNSRSPSQSRSQSRNRSQSRGRQQS 182

>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing|
           factor SRP75) (SRP001LB)
          Length = 494

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/55 (30%), Positives = 33/55 (60%)
 Frame = -3

Query: 486 TXNPSQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQN 322
           T   ++S  +  ++S+   PS  ++ + S S+ +SRS S SR  S+SPS ++ ++
Sbjct: 436 TNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRS 490

>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1575

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 477  PSQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQN 322
            PS S     + S SP  S CQ+   S+    S  + PSR  S++P     Q+
Sbjct: 1032 PSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQS 1083

>NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer cells|
            cyclophilin-related protein) (NK-TR protein)
          Length = 1462

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = -3

Query: 444  SQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLT 334
            SQS +PSR ++ + ++SR ++RS+S S  +S+S S T
Sbjct: 1309 SQSRSPSRSRSKSETKSRHRTRSVSYSHSRSRSRSST 1345

>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 272

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = -3

Query: 489 KTXNPSQSXCQXLNRSQSPNPSRCQ-NLNPSQSRCQSRSLSPSRCQSQSP 343
           ++ + S+S  +  +RS+S + SR + + + S+SR +SRS S SR  S+SP
Sbjct: 185 RSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSP 234

>A36DE_DROME (Q9V3R1) Accessory gland protein Acp36DE precursor|
          Length = 912

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -3

Query: 489 KTXNPSQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQNQ 319
           ++ + SQS     ++ Q+   S     NP  S  QS+S S S+ +SQ  S +Q Q Q
Sbjct: 199 QSQSASQSESNASSQFQAQEQSNRLLENPPVSESQSQSESQSQSESQKQSQSQSQRQ 255

>GUX1_HUMGT (P15828) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)|
           (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase)
           (Beta-glucancellobiohydrolase)
          Length = 525

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 225 TIDVMLTYDSRRRRRSTPSGATMCYFQNKW 136
           T+   +T DS  R     SG+T CY  NKW
Sbjct: 45  TVQASITLDSNWRWTHQVSGSTNCYTGNKW 74

>VE2_HPV17 (P36785) Regulatory protein E2|
          Length = 452

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -3

Query: 444 SQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 340
           S+SPN  R  +     +R QSRSLS SR +S+S S
Sbjct: 296 SRSPNRGRGGSSGGPTTRSQSRSLSRSRSRSRSRS 330

>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Insulin-induced growth response protein
           CL-4) (Delayed-early protein HRS)
          Length = 269

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 19/49 (38%), Positives = 33/49 (67%)
 Frame = -3

Query: 489 KTXNPSQSXCQXLNRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSP 343
           ++ + S+S  +  +RS+S + SR ++ + S+SR +SRS S SR  S+SP
Sbjct: 184 RSRSRSRSRTRSSSRSRSRSRSR-RSKSYSRSRSRSRSRSKSRSGSRSP 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,644,583
Number of Sequences: 219361
Number of extensions: 698568
Number of successful extensions: 4386
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3925
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)