ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22j05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member ... 32 1.2
2TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member ... 32 1.2
3FBX5_HUMAN (Q9UKT4) F-box only protein 5 (Early mitotic inhibito... 29 7.8
4ARFR_ARATH (Q9C5W9) Auxin response factor 18 29 7.8

>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor|
           (SM-11044-binding protein) (EP70-P-iso)
          Length = 589

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 492 GYTLMFXXXXXXXXXXXGYVGSTLFVRRIYRNIKCD 385
           GY  +F           GY+G++ FVR+IY N+K D
Sbjct: 554 GYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589



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>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor|
          Length = 587

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 492 GYTLMFXXXXXXXXXXXGYVGSTLFVRRIYRNIKCD 385
           GY  +F           GY+G++ FVR+IY N+K D
Sbjct: 552 GYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587



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>FBX5_HUMAN (Q9UKT4) F-box only protein 5 (Early mitotic inhibitor 1)|
          Length = 447

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 112 KETKKNKNLHQALVLNS*ATTDVYTMRAAPGNK*VCKKKGC 234
           K  KKN++L   +  NS A  D Y  RA       CK++GC
Sbjct: 367 KTLKKNESLKACIRCNSPAKYDCYLQRA------TCKREGC 401



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>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 310 FQSNGTYMISSDTAPPPPHICSRKLITFDVSVDSP 414
           + SN ++       PPPP  CS +L  FD++ +SP
Sbjct: 421 YSSNNSF---KPETPPPPTNCSYRLFGFDLTSNSP 452


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,050,637
Number of Sequences: 219361
Number of extensions: 1262182
Number of successful extensions: 2947
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2946
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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