>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor|
          Length = 587

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = -2

Query: 515 FQTSFYFGYTLMFXXXXXXXXXXXGYVGSTLFVRRIYRNIKCD 387
           FQTSFYFGY  +F           GY+G++ FVR+IY N+K D
Sbjct: 545 FQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587

>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor|
           (SM-11044-binding protein) (EP70-P-iso)
          Length = 589

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = -2

Query: 515 FQTSFYFGYTLMFXXXXXXXXXXXGYVGSTLFVRRIYRNIKCD 387
           FQTSFYFGY  +F           GY+G++ FVR+IY N+K D
Sbjct: 547 FQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589

>CD59_RAT (P27274) CD59 glycoprotein precursor (Membrane attack complex|
           inhibition factor) (MACIF) (MAC-inhibitory protein)
           (MAC-IP) (Protectin)
          Length = 126

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = -1

Query: 504 FLLWLHIDVLSWSGHTLRCY------WLCRVNSFCEENLQKHQM*LISCYICGVGAEQYQ 343
           F+L L + VL  +G +LRCY        C+ NS C  NL        +C +   G + YQ
Sbjct: 7   FILLLLLAVLCSTGVSLRCYNCLDPVSSCKTNSTCSPNLD-------ACLVAVSGKQVYQ 59

Query: 342 K 340
           +
Sbjct: 60  Q 60

>FBX5_HUMAN (Q9UKT4) F-box only protein 5 (Early mitotic inhibitor 1)|
          Length = 447

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 114 KETKKNKNLHQALVLNS*ATTDVYTMRAAPGNK*VCKKKGC 236
           K  KKN++L   +  NS A  D Y  RA       CK++GC
Sbjct: 367 KTLKKNESLKACIRCNSPAKYDCYLQRA------TCKREGC 401

>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4|
          Length = 625

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 500 YFGYTLMFXXXXXXXXXXXGYVGSTLFVRRIYRNIKCD 387
           YFGYT +            G+  + +FVR+IY  +K D
Sbjct: 588 YFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 625

>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor|
          Length = 589

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 512 QTSFYFGYTLMFXXXXXXXXXXXGYVGSTLFVRRIYRNIKCD 387
           QT  +FGY+L+             +  S  F+R IY N+K D
Sbjct: 548 QTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589

>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor|
          Length = 606

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 512 QTSFYFGYTLMFXXXXXXXXXXXGYVGSTLFVRRIYRNIKCD 387
           QT  +FGY+L+             +  S  F+R IY N+K D
Sbjct: 565 QTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606

>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor|
          Length = 606

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 512 QTSFYFGYTLMFXXXXXXXXXXXGYVGSTLFVRRIYRNIKCD 387
           QT  +FGY+L+             +  S  F+R IY N+K D
Sbjct: 565 QTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606

>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor|
           (hMP70)
          Length = 606

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 512 QTSFYFGYTLMFXXXXXXXXXXXGYVGSTLFVRRIYRNIKCD 387
           QT  +FGY+L+             +  S  F+R IY N+K D
Sbjct: 565 QTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606

>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 312 FQSNGTYMISSDTAPPPPHICSRKLITFDVSVDSP 416
           + SN ++       PPPP  CS +L  FD++ +SP
Sbjct: 421 YSSNNSF---KPETPPPPTNCSYRLFGFDLTSNSP 452

>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane|
           protein) (Pheromone alpha-factor transporter) (Acidic 24
           kDa late endocytic intermediate component)
          Length = 667

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 500 YFGYTLMFXXXXXXXXXXXGYVGSTLFVRRIYRNIKCD 387
           Y GY+ +            G++ S LFVR+IY +IK D
Sbjct: 630 YVGYSSVISLLCCLVTGSIGFISSMLFVRKIYSSIKVD 667


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,156,054
Number of Sequences: 219361
Number of extensions: 1345595
Number of successful extensions: 3103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3102
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)