ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22i15 |
|---|---|
| Clone Library Name | barley_pub |
>SP87_DICDI (P54643) Spore coat protein SP87 precursor (PL3 protein)| Length = 677 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +3 Query: 237 GSSSTSALARQSTSGGCSGTASPASCMSPVGSCSRGH 347 G SS+ + S+SGG SG++S S V SCS H Sbjct: 157 GGSSSGGTSGGSSSGGTSGSSSSGSSSGGVSSCSTTH 193
>DDX11_HUMAN (Q96FC9) Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-)| (DEAD/H box protein 11) (CHL1 homolog) (Keratinocyte growth factor-regulated gene 2 protein) (KRG-2) Length = 970 Score = 31.6 bits (70), Expect = 1.9 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = +3 Query: 267 QSTSGGCSGTA-SPASCMSPVGSCSRGHQGQT*SPCKGRRSIWPPLRCC 410 Q+ G C +A PA C +P C G SPC G+ +WP CC Sbjct: 848 QAPEGFCQRSAPGPAICPAP---CPGQAAGLDPSPCGGQSYLWPRHCCC 893
>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)| Length = 1186 Score = 31.6 bits (70), Expect = 1.9 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = +3 Query: 240 SSSTSALARQSTSGGCSGTASPASCMSPVGSCSRGHQG 353 SSS+S+ A S+SG G +S +S S GS +RGH G Sbjct: 553 SSSSSSSASSSSSGSNVGGSSQSSGSSTSGSNARGHLG 590
>IKAP_HUMAN (O95163) IkappaB kinase complex-associated protein (IKK| complex-associated protein) (p150) Length = 1332 Score = 30.8 bits (68), Expect = 3.2 Identities = 25/88 (28%), Positives = 33/88 (37%) Frame = +2 Query: 233 HGFLKYLCLSQAVHLRGLLWNRFSSFLHVSRR*LQPGSSGSNIIPLQRSTKHLATSSLLP 412 HG L V + LLWN SS L V LQ S + ++ L T Sbjct: 275 HGHFTLPFLKDEVKVNDLLWNADSSVLAVRLEDLQREKSS-----IPKTCVQLWTVGNYH 329 Query: 413 WPCTMTPLFTKSSTSFVVQAIWDMNTQY 496 W + F+ S +V +WD T Y Sbjct: 330 WYLKQSLSFSTCGKSKIVSLMWDPVTPY 357
>V1BR_RAT (P48974) Vasopressin V1b receptor (V1bR) (AVPR V1b) (Vasopressin V3| receptor) (AVPR V3) (Antidiuretic hormone receptor 1b) Length = 425 Score = 30.4 bits (67), Expect = 4.2 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -3 Query: 464 QRRTWSSW*REASSCMATATTKRWPNASSTFA 369 +RR W +W + +SS +ATA T+ P+ S+ + Sbjct: 240 ERRGWRTWDKSSSSAVATAATRGLPSRVSSIS 271
>LCE1C_HUMAN (Q5T751) Late cornified envelope protein 1C (Late envelope protein| 3) Length = 118 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +3 Query: 273 TSGGCSGTASPASC-MSPVGSCSRGHQGQT*SPCKGRRS 386 +SGGC G++S SC S G CS G G S + RRS Sbjct: 47 SSGGCCGSSSGGSCGSSSGGCCSSGGGGCCLSHHRRRRS 85
>LCE1B_HUMAN (Q5T7P3) Late cornified envelope protein 1B (Late envelope protein| 2) (Small proline-rich-like epidermal differentiation complex protein 2A) Length = 118 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +3 Query: 273 TSGGCSGTASPASC-MSPVGSCSRGHQGQT*SPCKGRRS 386 +SGGC G++S SC S G CS G G S + RRS Sbjct: 47 SSGGCCGSSSGGSCGSSSGGCCSSGGGGCCLSHHRRRRS 85
>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1904 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +3 Query: 276 SGGCSGTASPASCMSPVGSCSRGHQGQ 356 S G SGTA+PA+ +P S S+G +G+ Sbjct: 1857 SKGVSGTATPATAATPADSDSKGKKGR 1883
>ACSA_MOUSE (Q9QXG4) Acetyl-coenzyme A synthetase, cytoplasmic (EC 6.2.1.1)| (Acetate--CoA ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) (Acyl-CoA synthetase short-chain family member 2) Length = 701 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/53 (26%), Positives = 25/53 (47%) Frame = -2 Query: 507 HVTAYCVFMSQMACTTKDVELLVKRGVIVHGHGNNEEVAKCFVDLCKGIMFDP 349 +V+ + + +++ + E + + V+ H H E CFV LC G F P Sbjct: 573 NVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSP 625
>ACSA_HUMAN (Q9NR19) Acetyl-coenzyme A synthetase, cytoplasmic (EC 6.2.1.1)| (Acetate--CoA ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) (Acyl-CoA synthetase short-chain family member 2) Length = 701 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/53 (26%), Positives = 25/53 (47%) Frame = -2 Query: 507 HVTAYCVFMSQMACTTKDVELLVKRGVIVHGHGNNEEVAKCFVDLCKGIMFDP 349 +V+ + + +++ + E + + V+ H H E CFV LC G F P Sbjct: 573 NVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSP 625
>KAP1_HUMAN (P31321) cAMP-dependent protein kinase type I-beta regulatory| subunit Length = 380 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/61 (34%), Positives = 31/61 (50%) Frame = -2 Query: 480 SQMACTTKDVELLVKRGVIVHGHGNNEEVAKCFVDLCKGIMFDPDDPGCNYLRETCKKLE 301 S AC +++ E L + V HG + + C V LC + P+ P +LRE +KLE Sbjct: 2 SPPACPSEEDESLKGCELYVQLHGIQQVLKDCIVHLC---ISKPERP-MKFLREHFEKLE 57 Query: 300 K 298 K Sbjct: 58 K 58
>RDS2_XENLA (O42582) RDS/peripherin-like protein xRDS36| Length = 345 Score = 29.6 bits (65), Expect = 7.2 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = -2 Query: 411 GNNEEVAKCFVDLCKGIMF--DPDDPGCNYLRETCKKLEKRFQ----SNPRRW--TAWLR 256 G EE K + L I F D D PG Y + + KLE FQ ++P+ W W+ Sbjct: 124 GTLEESLK--IGLRNAIRFYKDTDTPGRCYQKRSMDKLEMDFQCCGNNHPKDWFEVQWIS 181 Query: 255 QRYL 244 RYL Sbjct: 182 NRYL 185 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,218,501 Number of Sequences: 219361 Number of extensions: 1678288 Number of successful extensions: 5526 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5262 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5509 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
