ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22i15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481907.1| Oryza sativa (japonica cultivar-group), mRNA 107 4e-20
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
3dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
4dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
5dbj|AK101110.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
6ref|XM_481911.1| Oryza sativa (japonica cultivar-group), mRNA 96 2e-16
7dbj|AK068581.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
8ref|XM_481909.1| Oryza sativa (japonica cultivar-group), mRNA 92 3e-15
9dbj|AK066547.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 3e-15
10ref|XM_481899.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
11ref|XM_481896.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
12dbj|AK066704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
13dbj|AK060790.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
14emb|CR734546.2|CNS0GTK1 Tetraodon nigroviridis full-length cDNA 42 2.1
15emb|CR731690.2|CNS0GRIN Tetraodon nigroviridis full-length cDNA 42 2.1
16emb|CR704272.2|CNS0G6D8 Tetraodon nigroviridis full-length cDNA 42 2.1
17emb|CR684776.2|CNS0FRBO Tetraodon nigroviridis full-length cDNA 42 2.1
18emb|CR683192.2|CNS0FQ3O Tetraodon nigroviridis full-length cDNA 42 2.1
19gb|AF303216.1|AF303216 Branchiostoma floridae homeobox Hx mRNA, ... 42 2.1
20gb|AC012619.6| Homo sapiens chromosome 5 clone CTD-2022K1, compl... 42 2.1
21gb|AC092221.1|AC092221 Drosophila melanogaster, chromosome 2L, r... 42 2.1
22dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
23dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
24dbj|AK105016.2| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
25dbj|AK101001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
26dbj|AK061363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
27gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 ... 42 2.1
28gb|AC003121.1|AC003121 Drosophila melanogaster (P1 DS00329 (D89)... 42 2.1
29ref|XM_430420.1| PREDICTED: Gallus gallus hypothetical gene supp... 40 8.3
30ref|XM_425618.1| PREDICTED: Gallus gallus similar to predicted C... 40 8.3
31ref|XM_425600.1| PREDICTED: Gallus gallus similar to reverse tra... 40 8.3
32gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, comp... 40 8.3
33emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on ch... 40 8.3
34emb|X13894.1|GGH2AF Chicken histone H2A.F gene 40 8.3
35gb|AC175318.4| Gallus gallus BAC clone CH261-46G16 from chromoso... 40 8.3
36emb|AJ621744.1| Gallus gallus gene for hypothetical protein, BAC... 40 8.3
37emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase... 40 8.3
38gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 8.3
39gb|AC130527.4| Mus musculus BAC clone RP23-56C10 from chromosome... 40 8.3
40dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
41gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete... 40 8.3
42gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosom... 40 8.3
43dbj|AB009050.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.3
44ref|NM_209572.1| Eremothecium gossypii ADR123Wp (ADR123W), mRNA 40 8.3
45gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
46emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb... 40 8.3
47gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosom... 40 8.3
48gb|AC140935.1| Gallus gallus BAC clone TAM31-90L17 from chromoso... 40 8.3
49gb|AC140947.1| Gallus gallus BAC clone TAM33-40B24 from chromoso... 40 8.3
50gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromoso... 40 8.3
51emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chr... 40 8.3 
>ref|XM_481907.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2375

 Score =  107 bits (54), Expect = 4e-20
 Identities = 117/138 (84%)
 Strand = Plus / Minus

                                                                        
Query: 446  agctccacgtccttcgttgtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
            |||||||||||| |||  ||||| |||| ||| ||||||||||||||||| ||||| || 
Sbjct: 1367 agctccacgtccctcgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacg 1308

                                                                        
Query: 506  tggctccccaccgtctcccggttcctctgctccagctccatcaggttgcgtaatagccgc 565
            ||||||||| ||| |  | |||| |||||||||||| |||||||||| || |  ||||||
Sbjct: 1307 tggctccccgccgccgacgggttgctctgctccagcgccatcaggttccggagcagccgc 1248

                              
Query: 566  cacgtctcggcgtcgatg 583
            ||||||||| ||||||||
Sbjct: 1247 cacgtctcgccgtcgatg 1230
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  107 bits (54), Expect = 4e-20
 Identities = 117/138 (84%)
 Strand = Plus / Plus

                                                                            
Query: 446      agctccacgtccttcgttgtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
                |||||||||||| |||  ||||| |||| ||| ||||||||||||||||| ||||| || 
Sbjct: 16301443 agctccacgtccctcgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacg 16301502

                                                                            
Query: 506      tggctccccaccgtctcccggttcctctgctccagctccatcaggttgcgtaatagccgc 565
                ||||||||| ||| |  | |||| |||||||||||| |||||||||| || |  ||||||
Sbjct: 16301503 tggctccccgccgccgacgggttgctctgctccagcgccatcaggttccggagcagccgc 16301562

                                  
Query: 566      cacgtctcggcgtcgatg 583
                ||||||||| ||||||||
Sbjct: 16301563 cacgtctcgccgtcgatg 16301580



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 177/220 (80%)
 Strand = Plus / Plus

                                                                            
Query: 365      cccttgcaaaggtcgacgaagcatttggccacctcttcgttgttgccgtggccatgcacg 424
                |||||||| || ||| ||||||  ||||| |||||  ||||||||||| |||| ||||||
Sbjct: 16324988 cccttgcagagatcggcgaagcgcttggcgacctcgccgttgttgccgaggccgtgcacg 16325047

                                                                            
Query: 425      atgacgcctctcttcaccaagagctccacgtccttcgttgtgcaggccatctgggacatg 484
                || ||||| | |  |  ||  |||||||||||| |||  ||  | |||| ||| ||||||
Sbjct: 16325048 atcacgccccgccgcgacagcagctccacgtccatcggcgtcgacgccagctgcgacatg 16325107

                                                                            
Query: 485      aacacgcagtatgccgtgacatggctccccaccgtctcccggttcctctgctccagctcc 544
                ||||||||||| ||||| || ||||||||| ||  |  | |||| |||||||||||| | 
Sbjct: 16325108 aacacgcagtacgccgtcacgtggctccccgcccccgacgggttgctctgctccagcgct 16325167

                                                        
Query: 545      atcaggttgcgtaatagccgccacgtctcggcgtcgatgt 584
                ||||||||||| |  ||||||||||||||| |||||||||
Sbjct: 16325168 atcaggttgcggagcagccgccacgtctcgccgtcgatgt 16325207



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Plus

                                                                            
Query: 446      agctccacgtccttcgttgtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
                ||||||||||||  ||  ||||| |||| ||| ||||||||||||||||| ||||| || 
Sbjct: 16313271 agctccacgtccgccgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacg 16313330

                                                                            
Query: 506      tggctccccaccgtctcccggttcctctgctccagctccatcaggttgcgtaatagccgc 565
                ||||||||| ||| | || |||||  |||||||||| ||||||||||||| |  ||| ||
Sbjct: 16313331 tggctccccgccgccgccgggttcgactgctccagcgccatcaggttgcggagcagcggc 16313390

                              
Query: 566      cacgtctcggcgtc 579
                |||||||| |||||
Sbjct: 16313391 cacgtctccgcgtc 16313404



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 464      gtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
                ||||| |||| ||||||||||| ||||||||| |||||||||
Sbjct: 16239905 gtgcacgccagctgggacatgagcacgcagtacgccgtgaca 16239864
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>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0426E02
          Length = 166985

 Score =  107 bits (54), Expect = 4e-20
 Identities = 117/138 (84%)
 Strand = Plus / Plus

                                                                        
Query: 446  agctccacgtccttcgttgtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
            |||||||||||| |||  ||||| |||| ||| ||||||||||||||||| ||||| || 
Sbjct: 7295 agctccacgtccctcgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacg 7354

                                                                        
Query: 506  tggctccccaccgtctcccggttcctctgctccagctccatcaggttgcgtaatagccgc 565
            ||||||||| ||| |  | |||| |||||||||||| |||||||||| || |  ||||||
Sbjct: 7355 tggctccccgccgccgacgggttgctctgctccagcgccatcaggttccggagcagccgc 7414

                              
Query: 566  cacgtctcggcgtcgatg 583
            ||||||||| ||||||||
Sbjct: 7415 cacgtctcgccgtcgatg 7432



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 177/220 (80%)
 Strand = Plus / Plus

                                                                         
Query: 365   cccttgcaaaggtcgacgaagcatttggccacctcttcgttgttgccgtggccatgcacg 424
             |||||||| || ||| ||||||  ||||| |||||  ||||||||||| |||| ||||||
Sbjct: 30840 cccttgcagagatcggcgaagcgcttggcgacctcgccgttgttgccgaggccgtgcacg 30899

                                                                         
Query: 425   atgacgcctctcttcaccaagagctccacgtccttcgttgtgcaggccatctgggacatg 484
             || ||||| | |  |  ||  |||||||||||| |||  ||  | |||| ||| ||||||
Sbjct: 30900 atcacgccccgccgcgacagcagctccacgtccatcggcgtcgacgccagctgcgacatg 30959

                                                                         
Query: 485   aacacgcagtatgccgtgacatggctccccaccgtctcccggttcctctgctccagctcc 544
             ||||||||||| ||||| || ||||||||| ||  |  | |||| |||||||||||| | 
Sbjct: 30960 aacacgcagtacgccgtcacgtggctccccgcccccgacgggttgctctgctccagcgct 31019

                                                     
Query: 545   atcaggttgcgtaatagccgccacgtctcggcgtcgatgt 584
             ||||||||||| |  ||||||||||||||| |||||||||
Sbjct: 31020 atcaggttgcggagcagccgccacgtctcgccgtcgatgt 31059



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Plus

                                                                         
Query: 446   agctccacgtccttcgttgtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
             ||||||||||||  ||  ||||| |||| ||| ||||||||||||||||| ||||| || 
Sbjct: 19123 agctccacgtccgccgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacg 19182

                                                                         
Query: 506   tggctccccaccgtctcccggttcctctgctccagctccatcaggttgcgtaatagccgc 565
             ||||||||| ||| | || |||||  |||||||||| ||||||||||||| |  ||| ||
Sbjct: 19183 tggctccccgccgccgccgggttcgactgctccagcgccatcaggttgcggagcagcggc 19242

                           
Query: 566   cacgtctcggcgtc 579
             |||||||| |||||
Sbjct: 19243 cacgtctccgcgtc 19256
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>dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1104G07
          Length = 119643

 Score =  107 bits (54), Expect = 4e-20
 Identities = 117/138 (84%)
 Strand = Plus / Plus

                                                                         
Query: 446   agctccacgtccttcgttgtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
             |||||||||||| |||  ||||| |||| ||| ||||||||||||||||| ||||| || 
Sbjct: 91621 agctccacgtccctcgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacg 91680

                                                                         
Query: 506   tggctccccaccgtctcccggttcctctgctccagctccatcaggttgcgtaatagccgc 565
             ||||||||| ||| |  | |||| |||||||||||| |||||||||| || |  ||||||
Sbjct: 91681 tggctccccgccgccgacgggttgctctgctccagcgccatcaggttccggagcagccgc 91740

                               
Query: 566   cacgtctcggcgtcgatg 583
             ||||||||| ||||||||
Sbjct: 91741 cacgtctcgccgtcgatg 91758



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 177/220 (80%)
 Strand = Plus / Plus

                                                                          
Query: 365    cccttgcaaaggtcgacgaagcatttggccacctcttcgttgttgccgtggccatgcacg 424
              |||||||| || ||| ||||||  ||||| |||||  ||||||||||| |||| ||||||
Sbjct: 115166 cccttgcagagatcggcgaagcgcttggcgacctcgccgttgttgccgaggccgtgcacg 115225

                                                                          
Query: 425    atgacgcctctcttcaccaagagctccacgtccttcgttgtgcaggccatctgggacatg 484
              || ||||| | |  |  ||  |||||||||||| |||  ||  | |||| ||| ||||||
Sbjct: 115226 atcacgccccgccgcgacagcagctccacgtccatcggcgtcgacgccagctgcgacatg 115285

                                                                          
Query: 485    aacacgcagtatgccgtgacatggctccccaccgtctcccggttcctctgctccagctcc 544
              ||||||||||| ||||| || ||||||||| ||  |  | |||| |||||||||||| | 
Sbjct: 115286 aacacgcagtacgccgtcacgtggctccccgcccccgacgggttgctctgctccagcgct 115345

                                                      
Query: 545    atcaggttgcgtaatagccgccacgtctcggcgtcgatgt 584
              ||||||||||| |  ||||||||||||||| |||||||||
Sbjct: 115346 atcaggttgcggagcagccgccacgtctcgccgtcgatgt 115385



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Plus

                                                                          
Query: 446    agctccacgtccttcgttgtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
              ||||||||||||  ||  ||||| |||| ||| ||||||||||||||||| ||||| || 
Sbjct: 103449 agctccacgtccgccgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacg 103508

                                                                          
Query: 506    tggctccccaccgtctcccggttcctctgctccagctccatcaggttgcgtaatagccgc 565
              ||||||||| ||| | || |||||  |||||||||| ||||||||||||| |  ||| ||
Sbjct: 103509 tggctccccgccgccgccgggttcgactgctccagcgccatcaggttgcggagcagcggc 103568

                            
Query: 566    cacgtctcggcgtc 579
              |||||||| |||||
Sbjct: 103569 cacgtctccgcgtc 103582



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 464   gtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
             ||||| |||| ||||||||||| ||||||||| |||||||||
Sbjct: 30083 gtgcacgccagctgggacatgagcacgcagtacgccgtgaca 30042
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>dbj|AK101110.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025F01, full
            insert sequence
          Length = 2375

 Score =  107 bits (54), Expect = 4e-20
 Identities = 117/138 (84%)
 Strand = Plus / Minus

                                                                        
Query: 446  agctccacgtccttcgttgtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
            |||||||||||| |||  ||||| |||| ||| ||||||||||||||||| ||||| || 
Sbjct: 1367 agctccacgtccctcgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacg 1308

                                                                        
Query: 506  tggctccccaccgtctcccggttcctctgctccagctccatcaggttgcgtaatagccgc 565
            ||||||||| ||| |  | |||| |||||||||||| |||||||||| || |  ||||||
Sbjct: 1307 tggctccccgccgccgacgggttgctctgctccagcgccatcaggttccggagcagccgc 1248

                              
Query: 566  cacgtctcggcgtcgatg 583
            ||||||||| ||||||||
Sbjct: 1247 cacgtctcgccgtcgatg 1230
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>ref|XM_481911.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1828

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 177/220 (80%)
 Strand = Plus / Minus

                                                                        
Query: 365  cccttgcaaaggtcgacgaagcatttggccacctcttcgttgttgccgtggccatgcacg 424
            |||||||| || ||| ||||||  ||||| |||||  ||||||||||| |||| ||||||
Sbjct: 1359 cccttgcagagatcggcgaagcgcttggcgacctcgccgttgttgccgaggccgtgcacg 1300

                                                                        
Query: 425  atgacgcctctcttcaccaagagctccacgtccttcgttgtgcaggccatctgggacatg 484
            || ||||| | |  |  ||  |||||||||||| |||  ||  | |||| ||| ||||||
Sbjct: 1299 atcacgccccgccgcgacagcagctccacgtccatcggcgtcgacgccagctgcgacatg 1240

                                                                        
Query: 485  aacacgcagtatgccgtgacatggctccccaccgtctcccggttcctctgctccagctcc 544
            ||||||||||| ||||| || ||||||||| ||  |  | |||| |||||||||||| | 
Sbjct: 1239 aacacgcagtacgccgtcacgtggctccccgcccccgacgggttgctctgctccagcgct 1180

                                                    
Query: 545  atcaggttgcgtaatagccgccacgtctcggcgtcgatgt 584
            ||||||||||| |  ||||||||||||||| |||||||||
Sbjct: 1179 atcaggttgcggagcagccgccacgtctcgccgtcgatgt 1140
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>dbj|AK068581.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155K13, full
            insert sequence
          Length = 1827

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 177/220 (80%)
 Strand = Plus / Minus

                                                                        
Query: 365  cccttgcaaaggtcgacgaagcatttggccacctcttcgttgttgccgtggccatgcacg 424
            |||||||| || ||| ||||||  ||||| |||||  ||||||||||| |||| ||||||
Sbjct: 1358 cccttgcagagatcggcgaagcgcttggcgacctcgccgttgttgccgaggccgtgcacg 1299

                                                                        
Query: 425  atgacgcctctcttcaccaagagctccacgtccttcgttgtgcaggccatctgggacatg 484
            || ||||| | |  |  ||  |||||||||||| |||  ||  | |||| ||| ||||||
Sbjct: 1298 atcacgccccgccgcgacagcagctccacgtccatcggcgtcgacgccagctgcgacatg 1239

                                                                        
Query: 485  aacacgcagtatgccgtgacatggctccccaccgtctcccggttcctctgctccagctcc 544
            ||||||||||| ||||| || ||||||||| ||  |  | |||| |||||||||||| | 
Sbjct: 1238 aacacgcagtacgccgtcacgtggctccccgcccccgacgggttgctctgctccagcgct 1179

                                                    
Query: 545  atcaggttgcgtaatagccgccacgtctcggcgtcgatgt 584
            ||||||||||| |  ||||||||||||||| |||||||||
Sbjct: 1178 atcaggttgcggagcagccgccacgtctcgccgtcgatgt 1139
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>ref|XM_481909.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1976

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Minus

                                                                        
Query: 446  agctccacgtccttcgttgtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
            ||||||||||||  ||  ||||| |||| ||| ||||||||||||||||| ||||| || 
Sbjct: 1451 agctccacgtccgccgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacg 1392

                                                                        
Query: 506  tggctccccaccgtctcccggttcctctgctccagctccatcaggttgcgtaatagccgc 565
            ||||||||| ||| | || |||||  |||||||||| ||||||||||||| |  ||| ||
Sbjct: 1391 tggctccccgccgccgccgggttcgactgctccagcgccatcaggttgcggagcagcggc 1332

                          
Query: 566  cacgtctcggcgtc 579
            |||||||| |||||
Sbjct: 1331 cacgtctccgcgtc 1318
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>dbj|AK066547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069E22, full
            insert sequence
          Length = 1976

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Minus

                                                                        
Query: 446  agctccacgtccttcgttgtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
            ||||||||||||  ||  ||||| |||| ||| ||||||||||||||||| ||||| || 
Sbjct: 1451 agctccacgtccgccgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacg 1392

                                                                        
Query: 506  tggctccccaccgtctcccggttcctctgctccagctccatcaggttgcgtaatagccgc 565
            ||||||||| ||| | || |||||  |||||||||| ||||||||||||| |  ||| ||
Sbjct: 1391 tggctccccgccgccgccgggttcgactgctccagcgccatcaggttgcggagcagcggc 1332

                          
Query: 566  cacgtctcggcgtc 579
            |||||||| |||||
Sbjct: 1331 cacgtctccgcgtc 1318
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>ref|XM_481899.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1809

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 464  gtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
            ||||| |||| ||||||||||| ||||||||| |||||||||
Sbjct: 1255 gtgcacgccagctgggacatgagcacgcagtacgccgtgaca 1214
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>ref|XM_481896.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1908

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 464  gtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
            ||||| |||| ||||||||||| ||||||||| |||||||||
Sbjct: 1414 gtgcacgccagctgggacatgagcacgcagtacgccgtgaca 1373
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>dbj|AK066704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074C21, full
            insert sequence
          Length = 1907

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 464  gtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
            ||||| |||| ||||||||||| ||||||||| |||||||||
Sbjct: 1413 gtgcacgccagctgggacatgagcacgcagtacgccgtgaca 1372
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>dbj|AK060790.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D11, full
            insert sequence
          Length = 1809

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 464  gtgcaggccatctgggacatgaacacgcagtatgccgtgaca 505
            ||||| |||| ||||||||||| ||||||||| |||||||||
Sbjct: 1255 gtgcacgccagctgggacatgagcacgcagtacgccgtgaca 1214
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>emb|CR734546.2|CNS0GTK1 Tetraodon nigroviridis full-length cDNA
          Length = 1595

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 520 ctcccggttcctctgctccag 540
           |||||||||||||||||||||
Sbjct: 929 ctcccggttcctctgctccag 909
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>emb|CR731690.2|CNS0GRIN Tetraodon nigroviridis full-length cDNA
          Length = 1596

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 520 ctcccggttcctctgctccag 540
           |||||||||||||||||||||
Sbjct: 929 ctcccggttcctctgctccag 909
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>emb|CR704272.2|CNS0G6D8 Tetraodon nigroviridis full-length cDNA
          Length = 1123

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 520 ctcccggttcctctgctccag 540
           |||||||||||||||||||||
Sbjct: 452 ctcccggttcctctgctccag 432
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>emb|CR684776.2|CNS0FRBO Tetraodon nigroviridis full-length cDNA
          Length = 1632

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 520 ctcccggttcctctgctccag 540
           |||||||||||||||||||||
Sbjct: 982 ctcccggttcctctgctccag 962
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>emb|CR683192.2|CNS0FQ3O Tetraodon nigroviridis full-length cDNA
          Length = 1644

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 520 ctcccggttcctctgctccag 540
           |||||||||||||||||||||
Sbjct: 979 ctcccggttcctctgctccag 959
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>gb|AF303216.1|AF303216 Branchiostoma floridae homeobox Hx mRNA, complete cds
          Length = 1409

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 288 tctggaaccgcttctccagct 308
           |||||||||||||||||||||
Sbjct: 656 tctggaaccgcttctccagct 636
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>gb|AC012619.6| Homo sapiens chromosome 5 clone CTD-2022K1, complete sequence
          Length = 89196

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 55    ctaatgtgattttagtagtca 75
             |||||||||||||||||||||
Sbjct: 59449 ctaatgtgattttagtagtca 59429
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>gb|AC092221.1|AC092221 Drosophila melanogaster, chromosome 2L, region 22A-22C, BAC clone
              BACR16D07, complete sequence
          Length = 170868

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    gcagtccacctccgggggttg 286
              |||||||||||||||||||||
Sbjct: 128255 gcagtccacctccgggggttg 128235
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 531     tctgctccagctccatcaggttgcg 555
               ||||||||||| |||||||||||||
Sbjct: 7745141 tctgctccagcgccatcaggttgcg 7745117



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 531     tctgctccagctccatcaggttgcg 555
               ||||||||||| |||||||||||||
Sbjct: 7700733 tctgctccagcgccatcaggttgcg 7700709
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>dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0079K11
          Length = 130082

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 531    tctgctccagctccatcaggttgcg 555
              ||||||||||| |||||||||||||
Sbjct: 112703 tctgctccagcgccatcaggttgcg 112679



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 531   tctgctccagctccatcaggttgcg 555
             ||||||||||| |||||||||||||
Sbjct: 68295 tctgctccagcgccatcaggttgcg 68271
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>dbj|AK105016.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-F02, full
            insert sequence
          Length = 1531

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 531  tctgctccagctccatcaggttgcg 555
            ||||||||||| |||||||||||||
Sbjct: 1068 tctgctccagcgccatcaggttgcg 1044
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>dbj|AK101001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147E24, full
            insert sequence
          Length = 1851

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 531  tctgctccagctccatcaggttgcg 555
            ||||||||||| |||||||||||||
Sbjct: 1073 tctgctccagcgccatcaggttgcg 1049
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>dbj|AK061363.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C06, full
            insert sequence
          Length = 1612

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 531  tctgctccagctccatcaggttgcg 555
            ||||||||||| |||||||||||||
Sbjct: 1156 tctgctccagcgccatcaggttgcg 1132
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>gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 of 83 of the complete
              sequence
          Length = 306696

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    gcagtccacctccgggggttg 286
              |||||||||||||||||||||
Sbjct: 201126 gcagtccacctccgggggttg 201106
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>gb|AC003121.1|AC003121 Drosophila melanogaster (P1 DS00329 (D89)) DNA sequence, complete
             sequence
          Length = 69822

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 266   gcagtccacctccgggggttg 286
             |||||||||||||||||||||
Sbjct: 10732 gcagtccacctccgggggttg 10752
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>ref|XM_430420.1| PREDICTED: Gallus gallus hypothetical gene supported by V00414
           (LOC426617), partial mRNA
          Length = 515

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 441 ccaagagctccacgtccttc 460
           ||||||||||||||||||||
Sbjct: 53  ccaagagctccacgtccttc 72
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>ref|XM_425618.1| PREDICTED: Gallus gallus similar to predicted CDS, RNA-directed DNA
            polymerase family member (1J119) (LOC428060), mRNA
          Length = 1278

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  ccaagagctccacgtccttc 460
            ||||||||||||||||||||
Sbjct: 1222 ccaagagctccacgtccttc 1203
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>ref|XM_425600.1| PREDICTED: Gallus gallus similar to reverse transcriptase like
           family member (3K694) (LOC428029), mRNA
          Length = 2979

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 441 ccaagagctccacgtccttc 460
           ||||||||||||||||||||
Sbjct: 991 ccaagagctccacgtccttc 972
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>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence
          Length = 196843

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   tagtaacacaaaacagagta 171
             ||||||||||||||||||||
Sbjct: 90208 tagtaacacaaaacagagta 90189
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>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains
             part of the PARD3 gene for par-3 partitioning defective 3
             homolog (C.elegans), complete sequence
          Length = 193131

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   tagtaacacaaaacagagta 171
             ||||||||||||||||||||
Sbjct: 86916 tagtaacacaaaacagagta 86897
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>emb|X13894.1|GGH2AF Chicken histone H2A.F gene
          Length = 8178

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 441  ccaagagctccacgtccttc 460
            ||||||||||||||||||||
Sbjct: 1632 ccaagagctccacgtccttc 1651
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>gb|AC175318.4| Gallus gallus BAC clone CH261-46G16 from chromosome w, complete sequence
          Length = 205599

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 441    ccaagagctccacgtccttc 460
              ||||||||||||||||||||
Sbjct: 124727 ccaagagctccacgtccttc 124746
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>emb|AJ621744.1| Gallus gallus gene for hypothetical protein, BAC bCHORI92M14 clone,
             contig 5
          Length = 68491

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   ccaagagctccacgtccttc 460
             ||||||||||||||||||||
Sbjct: 16078 ccaagagctccacgtccttc 16059
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>emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase gene locus (PADI12346 genes)
          Length = 355060

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 535    ctccagctccatcaggttgc 554
              ||||||||||||||||||||
Sbjct: 308177 ctccagctccatcaggttgc 308158
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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 327    ggtagttgcagccggggtcatcag 350
              ||||||||||||| ||||||||||
Sbjct: 925870 ggtagttgcagccagggtcatcag 925847
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>gb|AC130527.4| Mus musculus BAC clone RP23-56C10 from chromosome 1, complete sequence
          Length = 233538

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    ttgtagtaacacaaaacaga 168
              ||||||||||||||||||||
Sbjct: 131706 ttgtagtaacacaaaacaga 131725
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 223     aacggcaagccatgggttcctcaagtac 250
               ||||||||||| || |||||||||||||
Sbjct: 2202246 aacggcaagccctgcgttcctcaagtac 2202273
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>gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete sequence
          Length = 137506

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 535   ctccagctccatcaggttgc 554
             ||||||||||||||||||||
Sbjct: 99907 ctccagctccatcaggttgc 99926
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>gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosome 14, complete
             sequence
          Length = 211243

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   tcaccaagagctccacgtcc 457
             ||||||||||||||||||||
Sbjct: 66020 tcaccaagagctccacgtcc 66039
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>dbj|AB009050.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDF20
          Length = 86699

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tagaatttacaatacataag 33
             ||||||||||||||||||||
Sbjct: 36185 tagaatttacaatacataag 36204
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>ref|NM_209572.1| Eremothecium gossypii ADR123Wp (ADR123W), mRNA
          Length = 1563

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 327  ggtagttgcagccggggtcatcag 350
            ||||||||||||| ||||||||||
Sbjct: 1518 ggtagttgcagccagggtcatcag 1495
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 223     aacggcaagccatgggttcctcaagtac 250
               ||||||||||| || |||||||||||||
Sbjct: 2202190 aacggcaagccctgcgttcctcaagtac 2202217
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>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132703

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 223   aacggcaagccatgggttcctcaagtac 250
             ||||||||||| || |||||||||||||
Sbjct: 84470 aacggcaagccctgcgttcctcaagtac 84497
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>gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosome ul, complete
             sequence
          Length = 146640

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   ccaagagctccacgtccttc 460
             ||||||||||||||||||||
Sbjct: 70194 ccaagagctccacgtccttc 70175
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>gb|AC140935.1| Gallus gallus BAC clone TAM31-90L17 from chromosome ul, complete
             sequence
          Length = 72054

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 441   ccaagagctccacgtccttc 460
             ||||||||||||||||||||
Sbjct: 11390 ccaagagctccacgtccttc 11409
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>gb|AC140947.1| Gallus gallus BAC clone TAM33-40B24 from chromosome ul, complete sequence
          Length = 229639

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 441    ccaagagctccacgtccttc 460
              ||||||||||||||||||||
Sbjct: 107060 ccaagagctccacgtccttc 107079
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>gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromosome unknown, complete
              sequence
          Length = 227692

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 441    ccaagagctccacgtccttc 460
              ||||||||||||||||||||
Sbjct: 136705 ccaagagctccacgtccttc 136724
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>emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chromosome 14, complete
            sequence
          Length = 217241

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 438  tcaccaagagctccacgtcc 457
            ||||||||||||||||||||
Sbjct: 2542 tcaccaagagctccacgtcc 2523


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,637,135
Number of Sequences: 3902068
Number of extensions: 5637135
Number of successful extensions: 95601
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95423
Number of HSP's gapped (non-prelim): 173
length of query: 610
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 587
effective length of database: 17,143,297,704
effective search space: 10063115752248
effective search space used: 10063115752248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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