ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22i14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GALA_MOUSE (P47212) Galanin precursor [Contains: Galanin; Galani... 32 2.0
2GALA_BOVIN (P11242) Galanin precursor [Contains: Galanin; Galani... 31 2.6
3LIN10_CAEEL (O17583) Protein lin-10 (Abnormal cell lineage prote... 31 3.4
4GALA_PIG (P07480) Galanin precursor [Contains: Galanin; Galanin ... 30 5.8
5CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25 30 5.8

>GALA_MOUSE (P47212) Galanin precursor [Contains: Galanin; Galanin|
           message-associated peptide (GMAP)]
          Length = 124

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -3

Query: 586 GFDSGSGRRKTMLSRGYILSKDALSRARAFDESHQLSGSAAAKAAELSRRLGLTDRVSAG 407
           G  +   R  T+ S GY+L   A+   R+F + H L+G    +     RR G  D     
Sbjct: 25  GMPAKEKRGWTLNSAGYLLGPHAIDNHRSFSDKHGLTGKRELQLEVEERRPGSVDVPLPE 84

Query: 406 VGAIRSVDE 380
              +R++ E
Sbjct: 85  SNIVRTIME 93



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>GALA_BOVIN (P11242) Galanin precursor [Contains: Galanin; Galanin|
           message-associated peptide (GMAP)]
          Length = 123

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -3

Query: 556 TMLSRGYILSKDALSRARAFDESHQLSGSAAAKAAELSRRLGLTDRVSAGVGAIRSVDE 380
           T+ S GY+L   AL   R+F + H L+G    +  E   R G  DR  A    +R++ E
Sbjct: 35  TLNSAGYLLGPHALDSHRSFQDKHGLAGKRELE-PEDEARPGSFDRPLAENNVVRTIIE 92



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>LIN10_CAEEL (O17583) Protein lin-10 (Abnormal cell lineage protein 10)|
          Length = 982

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -3

Query: 589 GGFDSGSGRRKTMLSRGYILSKDALSRARAFDESHQLSGSAAAKAAELSRRLGLTDRVSA 410
           G  D     ++TM+    +L +  L RAR    +  L  S  +KAA +++      RV A
Sbjct: 582 GSVDKKKNSKETMVHEPAVLIEGVLFRARYLGSTQMLCESRGSKAARMAQAQEAVARVKA 641

Query: 409 GVGAIRSVDE 380
             G ++   E
Sbjct: 642 PEGDVQPSTE 651



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>GALA_PIG (P07480) Galanin precursor [Contains: Galanin; Galanin|
           message-associated peptide (GMAP)]
          Length = 123

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -3

Query: 556 TMLSRGYILSKDALSRARAFDESHQLSGSAAAKAAELSRRLGLTDRVSAGVGAIRSVDE 380
           T+ S GY+L   A+   R+F + + L+G    +  + +R  G  DR+ +   AIR++ E
Sbjct: 35  TLNSAGYLLGPHAIDNHRSFHDKYGLAGKRELEPEDEARPGGF-DRLQSEDKAIRTIME 92



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>CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25|
          Length = 447

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 389 SGRDIPCYRDDQDRRHCHRKNRGQGYEHHRDEQLFLRRSYDAVRGSH 249
           S RD    R D+DR     K+R   Y+H    + +  RS    RG+H
Sbjct: 260 SERDRRADRGDEDRHSSRYKDRDDRYDHSTRRRSYADRSPSPRRGNH 306


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,545,897
Number of Sequences: 219361
Number of extensions: 1478253
Number of successful extensions: 3809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3804
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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