ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22i07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRS1_ORYSA (P83649) Salt-stress root protein RS1 32 1.4
2UL52_EBV (P03193) Helicase/primase complex protein (Probable DNA... 31 3.0

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -1

Query: 589 SGTTPLSPAIVFILDK 542
           SGTTPLSPAI FIL+K
Sbjct: 109 SGTTPLSPAIAFILEK 124



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>UL52_EBV (P03193) Helicase/primase complex protein (Probable DNA replication|
           protein BSLF1)
          Length = 874

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 148 SKHVRTYVRRRTALAMHITHANVRTRMEHLLFFRWIGSP 32
           ++H+RTY  R T LA H+    ++ RME    + W   P
Sbjct: 312 AEHMRTYFTRETYLAEHVRVQQLKIRMEPPAPYTWDPDP 350


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,797,160
Number of Sequences: 219361
Number of extensions: 778064
Number of successful extensions: 1768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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