ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22i04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S6A18_MOUSE (O88576) Sodium- and chloride-dependent transporter ... 32 1.1
2S6A18_RAT (Q62687) Sodium- and chloride-dependent transporter XT... 32 1.4

>S6A18_MOUSE (O88576) Sodium- and chloride-dependent transporter XTRP2 (Solute|
           carrier family 6 member 18)
          Length = 615

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 309 NPSTGGGGEGFFSLNYESDFGFNRGLRWLSYVMKISYAHGVPW 181
           +P  GG G G FS+++     +N  L W+ +    S+ H +PW
Sbjct: 93  SPYLGGVGLGCFSVSFLVSLYYNTVLLWVLWFFLNSFQHPLPW 135



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>S6A18_RAT (Q62687) Sodium- and chloride-dependent transporter XTRP2 (Solute|
           carrier family 6 member 18) (Renal osmotic
           stress-induced Na-Cl organic solute cotransporter)
           (ROSIT)
          Length = 615

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 309 NPSTGGGGEGFFSLNYESDFGFNRGLRWLSYVMKISYAHGVPW 181
           +P  GG G G FS+++     +N  L W+ +    S+ H +PW
Sbjct: 93  SPYLGGVGLGCFSVSFLVSLYYNTILLWVLWFFLNSFQHPLPW 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,379,978
Number of Sequences: 219361
Number of extensions: 1038211
Number of successful extensions: 2050
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2048
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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