>US426_GAHVG (Q05104) Hypothetical 15.7 kDa protein|
          Length = 142

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 312 PPCSSSHLLSEENWALALPFGNSSSNAFVVPLT 410
           PP  SSH  +  +WAL +P   + SN+ VVPLT
Sbjct: 48  PPFRSSHCFTFSSWALGVPV-RTMSNSRVVPLT 79

>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD1) (CHD-1)
          Length = 1709

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -3

Query: 337 NKCEDEQGGANGXXXXXXXXXXSDNKGGANGSSRIDSGSNXIPNTTSKYREDRKLKPYST 158
           ++ +D+ G A+G          SD     +GSS  DSGS     + S+    R+ K  + 
Sbjct: 18  SQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAK 77

Query: 157 P 155
           P
Sbjct: 78  P 78

>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9|
          Length = 531

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 3/127 (2%)
 Frame = -3

Query: 547 VARTSARN--NVLEENMVVEKENELAVPREQAGNLPVVTAVNGGEDREVKGTTKALEDEL 374
           VA T+ R   +V +EN+ VE E  L   R   G      A  GG     +G    +    
Sbjct: 50  VAVTAPRKGRSVEKENVAVESEKNLGPSRRSPGTPRPPGASKGGRTPPQQGGRAGM---- 105

Query: 373 PKGRASAQFSSDNKCEDEQGGANGXXXXXXXXXXSDNKGGANGSSRID-SGSNXIPNTTS 197
             GRAS  +      +   GGA G             +G   GS  +  +G   I +  S
Sbjct: 106 --GRASRSWEGSPGEQPRGGGAGG----------RGRRGRGRGSPHLSGAGDTSISDRKS 153

Query: 196 KYREDRK 176
           K  E+R+
Sbjct: 154 KEWEERR 160

>ZBTB5_HUMAN (O15062) Zinc finger and BTB domain-containing protein 5|
          Length = 677

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 30/117 (25%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
 Frame = -3

Query: 514 EENMVVEKENELAVPREQAGNLPVVTAVNGGEDREVKGTTKALED-ELPKGRASAQFSSD 338
           E   VV K   L+ P  Q     V +   G E  EV+G   + E  +L    +   FS  
Sbjct: 323 EHMRVVVKSEPLSSPEPQDEVSDVTSQAEGSESVEVEGVVVSAEKIDLSPESSDRSFSDP 382

Query: 337 NKCEDEQGGA-------NGXXXXXXXXXXSDNKGGANGSSRIDSGSNXIPNTTSKYR 188
               D  G         N             NK   N  +   +  + IPNTTS  R
Sbjct: 383 QSSTDRVGDIHILEVTNNLEHKSTFSISNFLNKSRGNNFTANQNNDDNIPNTTSDCR 439

>RUBA_WHEAT (P08823) RuBisCO large subunit-binding protein subunit alpha,|
           chloroplast precursor (60 kDa chaperonin subunit alpha)
           (CPN-60 alpha) (Fragment)
          Length = 543

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -3

Query: 577 VTKSXRGRGMVARTSARNNVLEENMVVEKENELAVPREQAGNLPVVTAVNGGEDREVKGT 398
           VT   RGR +V        V+ + + + +  ELA P E AG   +    +   D    GT
Sbjct: 30  VTLGPRGRNVVLDEYGNPKVVNDGVTIARAIELANPMENAGAALIREVASKTNDSAGDGT 89

Query: 397 TKA 389
           T A
Sbjct: 90  TTA 92

>CCNL2_HUMAN (Q96S94) Cyclin-L2 (Paneth cell-enhanced expression protein)|
          Length = 520

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
 Frame = -3

Query: 472 PREQAGNLPVVTAVNGGEDREVKGTTKALEDE----LPKGRASAQFSSDNKCEDEQGGAN 305
           P+E  G+ P   +V   + R ++G  KA  D     LPKGR S   S   +    +  + 
Sbjct: 339 PKEGKGSKPSPLSVKNTK-RRLEGAKKAKADSPVNGLPKGRESRSRSRSREQSYSRSPSR 397

Query: 304 GXXXXXXXXXXSDNKGGANGSSRIDSGSNXIPNTT--------SKYREDRKLKPYSTP 155
                          GG+   SR  S S+  P           S+ R  RK K    P
Sbjct: 398 SASPKRRKSDSGSTSGGSKSQSRSRSRSDSPPRQAPRSAPYKGSEIRGSRKSKDCKYP 455

>AVT3_YEAST (P36062) Vacuolar amino acid transporter 3|
          Length = 692

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 358 SAQFSSDNKCEDEQGGANGXXXXXXXXXXSDNKGGANGSSRIDSGSNXIPNTT 200
           S +  S+N  ++  GG+ G            N G +NG+SR  S S     TT
Sbjct: 10  SGRTQSNNNKKNNNGGSTGISHASGSPLTDGNGGNSNGNSRSRSRSRKSSGTT 62

>ZBTB5_MOUSE (Q7TQG0) Zinc finger and BTB domain-containing protein 5|
           (Transcription factor ZNF-POZ)
          Length = 670

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 30/117 (25%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
 Frame = -3

Query: 514 EENMVVEKENELAVPREQAGNLPVVTAVNGGEDREVKGTTKALED-ELPKGRASAQFSSD 338
           E   VV K   L+ P  Q     V +   G E  EV+G   + E  +L    +   FS  
Sbjct: 318 EHMRVVVKSEPLSSPEPQDEVSDVTSQAEGSESVEVEGVVVSAEKIDLSPESSDRSFSDP 377

Query: 337 NKCEDEQGGA-------NGXXXXXXXXXXSDNKGGANGSSRIDSGSNXIPNTTSKYR 188
               D  G         N             NK   +  S   S  + +PNTTS  R
Sbjct: 378 QSSTDRVGDIHILEVTNNLEHKTSFSISNFLNKSRGSNFSASQSTDDNLPNTTSDCR 434

>LYAG_MOUSE (P70699) Lysosomal alpha-glucosidase precursor (EC 3.2.1.20) (Acid|
           maltase)
          Length = 953

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +3

Query: 258 PLLSEEDWALATVEEPFAPPCSSSHLLSEENWALALPFGNSSSNAFVVPLTSLS-----S 422
           PL+   DWA  T+     PP   ++L     + LAL  G  +   F++   ++      S
Sbjct: 266 PLMLSTDWARITLWNRDTPPSQGTNLYGSHPFYLALEDGGLAHGVFLLNSNAMDVILQPS 325

Query: 423 PPFTAVTTG 449
           P  T  +TG
Sbjct: 326 PALTWRSTG 334

>RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated with lethal|
           yellow homolog) (Autoantigen p542)
          Length = 306

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -3

Query: 412 EVKGTTKALEDELPKGRASAQFSSDNKCEDEQGGANGXXXXXXXXXXSDNKGGANGSSRI 233
           ++K    AL   L +  A  + + D K + + GGA G              GG  GSSR 
Sbjct: 196 QIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRP 255

Query: 232 DSGSNXIPNTTSK 194
            +      NTTS+
Sbjct: 256 PAPQE---NTTSE 265

>LEXA_BACLD (Q65J42) LexA repressor (EC 3.4.21.88)|
          Length = 207

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 556 RGMVARTSARNNVLEENMVVEKENELAVPREQAGNLPVVTAVNGG 422
           +G++ R   +   +E   +++ E E+ +P+ Q  N+PV+  V  G
Sbjct: 53  KGLIRRDPTKPRAIE---ILDTEEEIHIPKNQVVNVPVIGKVTAG 94

>NFL_HUMAN (P07196) Neurofilament triplet L protein (68 kDa neurofilament|
           protein) (Neurofilament light polypeptide) (NF-L)
          Length = 542

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -3

Query: 526 NNVLEENMVVEKENELAVPREQAGNLPVVTAVNGGEDREVKGTTKALEDELPKGRASAQF 347
           ++V EE + VE+  E A   E     P      G  + E K   +A E+E  +   +A+ 
Sbjct: 444 SHVQEEQIEVEETIEAAKAEEAKDEPPS----EGEAEEEEKDKEEAEEEEAAEEEEAAKE 499

Query: 346 SSDNKCEDEQGG 311
            S+   E+E+GG
Sbjct: 500 ESEEAKEEEEGG 511

>TBX18_MOUSE (Q9EPZ6) T-box transcription factor TBX18 (T-box protein 18)|
          Length = 613

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 300 EPFAPPCSSSHLLSEENWALALPFGNSSSNAFVVPLTSLS 419
           E FAPP + S++    N ++ +  G +  + F  P TSLS
Sbjct: 453 ETFAPPRTPSYVSVSSNPSVNMSMGGTDGDTFSCPQTSLS 492


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,284,759
Number of Sequences: 219361
Number of extensions: 1564614
Number of successful extensions: 4626
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4609
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)