ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22i03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473146.1| Oryza sativa (japonica cultivar-group), predic... 60 8e-06
2emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 60 8e-06
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
4dbj|AK102761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
5emb|CR550303.18| Mouse DNA sequence from clone RP24-87D8 on chro... 46 0.13
6emb|CR847872.2| Mouse DNA sequence from clone RP24-260B21 on chr... 46 0.13
7emb|BX950196.7| Mouse DNA sequence from clone RP23-287E8 on chro... 46 0.13
8emb|BX001066.14| Mouse DNA sequence from clone RP23-463P1 on chr... 46 0.13
9emb|AL772344.4| Mouse DNA sequence from clone RP23-235J15 on chr... 46 0.13
10emb|AL772327.4| Mouse DNA sequence from clone RP23-241B2 on chro... 46 0.13
11emb|AL807803.6| Mouse DNA sequence from clone RP23-96B14 on chro... 44 0.50
12ref|NM_001003343.1| Canis familiaris dystrophin (muscular dystro... 42 2.0
13gb|AF070485.1| Canis familiaris dystrophin mRNA, complete cds 42 2.0
14gb|AY253132.1| Baclozygum brachypterum cytochrome oxidase subuni... 42 2.0
15ref|XM_850502.1| PREDICTED: Canis familiaris hypothetical protei... 42 2.0
16gb|AC121802.3| Mus musculus BAC clone RP23-434N18 from chromosom... 42 2.0
17gb|AF192292.1| Aplysia juliana 16S ribosomal RNA gene, partial s... 42 2.0
18emb|CR524055.1| Gallus gallus finished cDNA, clone ChEST1017k6 42 2.0
19emb|AL772372.4| Mouse DNA sequence from clone RP23-375N21 on chr... 42 2.0
20gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 7.9
21gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 40 7.9
22gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 40 7.9
23ref|NM_015288.4| Homo sapiens PHD finger protein 15 (PHF15), mRNA 40 7.9
24gb|AC141890.3| Mus musculus BAC clone RP23-410K18 from chromosom... 40 7.9
25gb|AC127299.3| Mus musculus BAC clone RP23-264I11 from 7, comple... 40 7.9
26gb|CP000001.1| Bacillus cereus E33L, complete genome 40 7.9
27emb|BX322784.3| Human DNA sequence from clone RP11-3D23 on chrom... 40 7.9
28emb|AL392111.12| Human DNA sequence from clone RP11-487I5 on chr... 40 7.9
29emb|AL096773.6|HS1000E10 Human DNA sequence from clone RP5-1000E... 40 7.9
30gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Can... 40 7.9
31gb|AC106763.2| Homo sapiens chromosome 5 clone RP11-21C10, compl... 40 7.9
32dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 7.9
33gb|AC011433.5| Homo sapiens chromosome 5 clone P1_988H11, comple... 40 7.9
34gb|AC008774.7| Homo sapiens chromosome 5 clone CTD-2018M7, compl... 40 7.9
35gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15, comp... 40 7.9
36gb|AC016638.9| Homo sapiens chromosome 5 clone RP11-365H8, compl... 40 7.9
37gb|AC024164.6|AC024164 Homo sapiens chromosome 3 clone RP11-350A... 40 7.9
38gb|AC116616.5| Homo sapiens BAC clone RP11-51M24 from 4, complet... 40 7.9
39gb|AC096967.18| Homo sapiens 3 BAC RP11-200A1 (Roswell Park Canc... 40 7.9
40ref|XM_218515.3| PREDICTED: Rattus norvegicus zinc finger protei... 40 7.9
41gb|AC074362.5| Homo sapiens BAC clone RP11-1C10 from 2, complete... 40 7.9
42gb|AC006427.13|AC006427 Homo sapiens chromosome 4 clone C0201M04... 40 7.9
43tpe|BN000288.1|HSA000288 TPA: TPA_inf: Homo sapiens mRNA for JAD... 40 7.9
44dbj|D87076.2| Homo sapiens mRNA for KIAA0239 gene, partial cds 40 7.9
45gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 7.9
46gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 40 7.9
47gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 7.9
48emb|BX295541.1|HS172N19 Homo sapiens chromosome X PAC RP1-172N19... 40 7.9
49emb|AL353999.3|HS73J07 Homo sapiens chromosome X sequence from B... 40 7.9
50gb|AC087589.3| Homo sapiens chromosome 3 clone RP11-1102N22 map ... 40 7.9 
>ref|XM_473146.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1398

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 184  cctctctgtatttgcttgttgtgttggggattncattagatcctgaatc 232
            ||||||||||||||||||| || ||||||||| |||| | |||||||||
Sbjct: 1357 cctctctgtatttgcttgtcgtattggggattccattggttcctgaatc 1309
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>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
             complete sequence
          Length = 158601

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 184   cctctctgtatttgcttgttgtgttggggattncattagatcctgaatc 232
             ||||||||||||||||||| || ||||||||| |||| | |||||||||
Sbjct: 40877 cctctctgtatttgcttgtcgtattggggattccattggttcctgaatc 40925



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                      
Query: 109   ctcatgcagagtacttctgcagagctctatccagcctgacatcaaagggagtcgagt 165
             ||||||||||| | |||| ||| |||||||||||||||||||  |||||||| ||||
Sbjct: 40727 ctcatgcagaggatttcttcagtgctctatccagcctgacattgaagggagttgagt 40783
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                 
Query: 184      cctctctgtatttgcttgttgtgttggggattncattagatcctgaatc 232
                ||||||||||||||||||| || ||||||||| |||| | |||||||||
Sbjct: 25554680 cctctctgtatttgcttgtcgtattggggattccattggttcctgaatc 25554728



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                         
Query: 109      ctcatgcagagtacttctgcagagctctatccagcctgacatcaaagggagtcgagt 165
                ||||||||||| | |||| ||| |||||||||||||||||||  |||||||| ||||
Sbjct: 25554530 ctcatgcagaggatttcttcagtgctctatccagcctgacattgaagggagttgagt 25554586
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>dbj|AK102761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107C20, full
            insert sequence
          Length = 1657

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 184  cctctctgtatttgcttgttgtgttggggattncattagatcctgaatc 232
            ||||||||||||||||||| || ||||||||| |||| | |||||||||
Sbjct: 1356 cctctctgtatttgcttgtcgtattggggattccattggttcctgaatc 1308



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 109  ctcatgcagagtacttctgcagagctctatccagcctgacatcaaagggagtcgagt 165
            ||||||||||| | |||| ||| |||||||||||||||||||  |||||||| ||||
Sbjct: 1506 ctcatgcagaggatttcttcagtgctctatccagcctgacattgaagggagttgagt 1450
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>emb|CR550303.18| Mouse DNA sequence from clone RP24-87D8 on chromosome 4, complete
              sequence
          Length = 194565

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 174    agttttctatcctctctgtattt 196
              |||||||||||||||||||||||
Sbjct: 157754 agttttctatcctctctgtattt 157776



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 174   agttttctatcctctctgtattt 196
             |||||||||||||||||||||||
Sbjct: 81836 agttttctatcctctctgtattt 81858
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>emb|CR847872.2| Mouse DNA sequence from clone RP24-260B21 on chromosome 4, complete
             sequence
          Length = 59848

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 174   agttttctatcctctctgtattt 196
             |||||||||||||||||||||||
Sbjct: 44200 agttttctatcctctctgtattt 44222
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>emb|BX950196.7| Mouse DNA sequence from clone RP23-287E8 on chromosome 4, complete
              sequence
          Length = 170778

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 174    agttttctatcctctctgtattt 196
              |||||||||||||||||||||||
Sbjct: 101722 agttttctatcctctctgtattt 101700



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 174   agttttctatcctctctgtattt 196
             |||||||||||||||||||||||
Sbjct: 21560 agttttctatcctctctgtattt 21538
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>emb|BX001066.14| Mouse DNA sequence from clone RP23-463P1 on chromosome 4, complete
              sequence
          Length = 195216

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 174    agttttctatcctctctgtattt 196
              |||||||||||||||||||||||
Sbjct: 129351 agttttctatcctctctgtattt 129373
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>emb|AL772344.4| Mouse DNA sequence from clone RP23-235J15 on chromosome 4, complete
             sequence
          Length = 223771

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 174   agttttctatcctctctgtattt 196
             |||||||||||||||||||||||
Sbjct: 65376 agttttctatcctctctgtattt 65398
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>emb|AL772327.4| Mouse DNA sequence from clone RP23-241B2 on chromosome 4, complete
              sequence
          Length = 222631

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 174    agttttctatcctctctgtattt 196
              |||||||||||||||||||||||
Sbjct: 176929 agttttctatcctctctgtattt 176907



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 174    agttttctatcctctctgtattt 196
              |||||||||||||||||||||||
Sbjct: 107594 agttttctatcctctctgtattt 107572



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 174   agttttctatcctctctgtattt 196
             |||||||||||||||||||||||
Sbjct: 24743 agttttctatcctctctgtattt 24721
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>emb|AL807803.6| Mouse DNA sequence from clone RP23-96B14 on chromosome X, complete
              sequence
          Length = 177011

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 174    agttttctatcctctctgtatt 195
              ||||||||||||||||||||||
Sbjct: 115678 agttttctatcctctctgtatt 115657
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>ref|NM_001003343.1| Canis familiaris dystrophin (muscular dystrophy, Duchenne and Becker
             types) (DMD), mRNA
          Length = 13887

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    atcagaagacatttttaactc 87
             |||||||||||||||||||||
Sbjct: 12413 atcagaagacatttttaactc 12433
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>gb|AF070485.1| Canis familiaris dystrophin mRNA, complete cds
          Length = 13887

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    atcagaagacatttttaactc 87
             |||||||||||||||||||||
Sbjct: 12413 atcagaagacatttttaactc 12433
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>gb|AY253132.1| Baclozygum brachypterum cytochrome oxidase subunit I-like gene,
           partial sequence; mitochondrial
          Length = 815

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 257 acccttgttgtcagaagaagactgg 281
           |||||| ||||||||||||||||||
Sbjct: 290 acccttcttgtcagaagaagactgg 314
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>ref|XM_850502.1| PREDICTED: Canis familiaris hypothetical protein LOC606758 (LOC606758),
             mRNA
          Length = 13507

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    atcagaagacatttttaactc 87
             |||||||||||||||||||||
Sbjct: 12033 atcagaagacatttttaactc 12053
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>gb|AC121802.3| Mus musculus BAC clone RP23-434N18 from chromosome 18, complete
             sequence
          Length = 187787

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   tgtatttgcttgttgtgttgg 210
             |||||||||||||||||||||
Sbjct: 66309 tgtatttgcttgttgtgttgg 66329
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>gb|AF192292.1| Aplysia juliana 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 420

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 70  agaagacatttttaactcttc 90
           |||||||||||||||||||||
Sbjct: 248 agaagacatttttaactcttc 268
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>emb|CR524055.1| Gallus gallus finished cDNA, clone ChEST1017k6
          Length = 910

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 128 cagagctctatccagcctgac 148
           |||||||||||||||||||||
Sbjct: 711 cagagctctatccagcctgac 731
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>emb|AL772372.4| Mouse DNA sequence from clone RP23-375N21 on chromosome 2, complete
              sequence
          Length = 210503

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 293    tgtagaagaaccattcgcacc 313
              |||||||||||||||||||||
Sbjct: 146292 tgtagaagaaccattcgcacc 146272
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 77      atttttaactcttcaactttagta 100
               ||||||||||| ||||||||||||
Sbjct: 1084775 atttttaactcatcaactttagta 1084798
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 77      atttttaactcttcaactttagta 100
               ||||||||||| ||||||||||||
Sbjct: 1055849 atttttaactcatcaactttagta 1055872
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 77      atttttaactcttcaactttagta 100
               ||||||||||| ||||||||||||
Sbjct: 1055742 atttttaactcatcaactttagta 1055765
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>ref|NM_015288.4| Homo sapiens PHD finger protein 15 (PHF15), mRNA
          Length = 6463

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 350  ctgggcactggccctcccct 369
            ||||||||||||||||||||
Sbjct: 3343 ctgggcactggccctcccct 3324
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>gb|AC141890.3| Mus musculus BAC clone RP23-410K18 from chromosome 7, complete sequence
          Length = 169771

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   accattcgcaccacccttgt 264
             ||||||||||||||||||||
Sbjct: 99746 accattcgcaccacccttgt 99765
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>gb|AC127299.3| Mus musculus BAC clone RP23-264I11 from 7, complete sequence
          Length = 160602

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   accattcgcaccacccttgt 264
             ||||||||||||||||||||
Sbjct: 59423 accattcgcaccacccttgt 59442
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 77      atttttaactcttcaactttagta 100
               ||||||||||| ||||||||||||
Sbjct: 1096562 atttttaactcatcaactttagta 1096585
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>emb|BX322784.3| Human DNA sequence from clone RP11-3D23 on chromosome X Contains a
             Sjogren syndrome antigen B (autoantigen La) (SSB)
             pseudogene, complete sequence
          Length = 169147

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 65    caatcagaagacatttttaactct 88
             ||||||||||| ||||||||||||
Sbjct: 12053 caatcagaagaaatttttaactct 12030
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>emb|AL392111.12| Human DNA sequence from clone RP11-487I5 on chromosome 10 Contains the
             DUSP13 gene for dual specificity phosphatase 13 (BEDP,
             TMDP, FLJ32450), the gene for a novel protein (FLJ25082),
             the 5' end fo the VDAC2 gene for voltage-dependent anion
             channel 2, a peptidylprolyl isomerase A (cyclophilin
             A)(PPIA)(CYPA, CYPH) pseudogene, a ribosomal protein S26
             (RPS26) pseudogene and two CpG islands, complete sequence
          Length = 159365

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 446   tggcagattccctgcttgctctct 469
             ||||||||||||||| ||||||||
Sbjct: 35505 tggcagattccctgcctgctctct 35482
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>emb|AL096773.6|HS1000E10 Human DNA sequence from clone RP5-1000E10 on chromosome 1p12-13.3
             Contains the 5' end of the gene for a novel protein
             (FLJ37099), the AMPD1 gene for adenosine monophosphate
             deaminase 1 (isoform M), the NRAS gene for neuroblastoma
             RAS viral (v-ras) oncogene homolog, the gene for
             NRAS-related gene (D1S155E) and the gene for a novel
             protein (FLJ44339), complete sequence
          Length = 140207

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 478   ccaattcattttccttttctacca 501
             ||||||||||||||| ||||||||
Sbjct: 77090 ccaattcattttcctcttctacca 77067
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>gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 156422

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    caatcagaagacatttttaactct 88
             |||||||||||||| |||||||||
Sbjct: 58002 caatcagaagacatgtttaactct 58025
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>gb|AC106763.2| Homo sapiens chromosome 5 clone RP11-21C10, complete sequence
          Length = 165902

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    ctgggcactggccctcccct 369
              ||||||||||||||||||||
Sbjct: 102279 ctgggcactggccctcccct 102298
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 302     accattcgcaccaccctgttcatc 325
               ||||||| ||||||||||||||||
Sbjct: 1414285 accattcccaccaccctgttcatc 1414262
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>gb|AC011433.5| Homo sapiens chromosome 5 clone P1_988H11, complete sequence
          Length = 75454

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   ctgggcactggccctcccct 369
             ||||||||||||||||||||
Sbjct: 45578 ctgggcactggccctcccct 45559
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>gb|AC008774.7| Homo sapiens chromosome 5 clone CTD-2018M7, complete sequence
          Length = 128781

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   aggaaaactgggcactggcc 362
             ||||||||||||||||||||
Sbjct: 64224 aggaaaactgggcactggcc 64243
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>gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15, complete sequence
          Length = 158094

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    aggaaaactgggcactggcc 362
              ||||||||||||||||||||
Sbjct: 137686 aggaaaactgggcactggcc 137667
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>gb|AC016638.9| Homo sapiens chromosome 5 clone RP11-365H8, complete sequence
          Length = 182823

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   aggaaaactgggcactggcc 362
             ||||||||||||||||||||
Sbjct: 17406 aggaaaactgggcactggcc 17387
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>gb|AC024164.6|AC024164 Homo sapiens chromosome 3 clone RP11-350A17 map 3p, complete sequence
          Length = 152580

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  ctatcctcacccccattcac 433
            ||||||||||||||||||||
Sbjct: 3794 ctatcctcacccccattcac 3775
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>gb|AC116616.5| Homo sapiens BAC clone RP11-51M24 from 4, complete sequence
          Length = 94560

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   cattagatcctgaatcaatt 236
             ||||||||||||||||||||
Sbjct: 68487 cattagatcctgaatcaatt 68468
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>gb|AC096967.18| Homo sapiens 3 BAC RP11-200A1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 123251

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 480   aattcattttccttttctaccacc 503
             |||||||||||||||||| |||||
Sbjct: 89509 aattcattttccttttctcccacc 89532
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>ref|XM_218515.3| PREDICTED: Rattus norvegicus zinc finger protein 507 (predicted)
           (Znf507_predicted), mRNA
          Length = 3041

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 63  cccaatcagaagacattttt 82
           ||||||||||||||||||||
Sbjct: 428 cccaatcagaagacattttt 409
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>gb|AC074362.5| Homo sapiens BAC clone RP11-1C10 from 2, complete sequence
          Length = 149705

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   ttctgcagagctctatccag 142
             ||||||||||||||||||||
Sbjct: 99463 ttctgcagagctctatccag 99444
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>gb|AC006427.13|AC006427 Homo sapiens chromosome 4 clone C0201M04, complete sequence
          Length = 178524

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   gtatttgcttgttgtgttgg 210
             ||||||||||||||||||||
Sbjct: 90295 gtatttgcttgttgtgttgg 90276
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>tpe|BN000288.1|HSA000288 TPA: TPA_inf: Homo sapiens mRNA for JADE2 protein (JADE2 gene)
          Length = 6463

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 350  ctgggcactggccctcccct 369
            ||||||||||||||||||||
Sbjct: 3343 ctgggcactggccctcccct 3324
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>dbj|D87076.2| Homo sapiens mRNA for KIAA0239 gene, partial cds
          Length = 6466

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 350  ctgggcactggccctcccct 369
            ||||||||||||||||||||
Sbjct: 3343 ctgggcactggccctcccct 3324
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 77      atttttaactcttcaactttagta 100
               ||||||||||| ||||||||||||
Sbjct: 1057200 atttttaactcatcaactttagta 1057223
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 77      atttttaactcttcaactttagta 100
               ||||||||||| ||||||||||||
Sbjct: 1055849 atttttaactcatcaactttagta 1055872
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 77      atttttaactcttcaactttagta 100
               ||||||||||| ||||||||||||
Sbjct: 1181919 atttttaactcatcaactttagta 1181942
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>emb|BX295541.1|HS172N19 Homo sapiens chromosome X PAC RP1-172N19 map Xq13 markers PHKA1-DXS227,
              complete sequence
          Length = 176589

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    tatcggaggaaaactgggca 356
              ||||||||||||||||||||
Sbjct: 160437 tatcggaggaaaactgggca 160418
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>emb|AL353999.3|HS73J07 Homo sapiens chromosome X sequence from BAC CEPHB73J07 region
             PHKA1-DXS227 map Xq13, complete sequence
          Length = 126374

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   tatcggaggaaaactgggca 356
             ||||||||||||||||||||
Sbjct: 72608 tatcggaggaaaactgggca 72627
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>gb|AC087589.3| Homo sapiens chromosome 3 clone RP11-1102N22 map 3p, complete sequence
          Length = 181736

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   ctatcctcacccccattcac 433
             ||||||||||||||||||||
Sbjct: 19499 ctatcctcacccccattcac 19480


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,117,116
Number of Sequences: 3902068
Number of extensions: 5117116
Number of successful extensions: 103023
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102595
Number of HSP's gapped (non-prelim): 428
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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