ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22i02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184896.1| Oryza sativa (japonica cultivar-group), mRNA 101 3e-18
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 3e-18
3gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genom... 101 3e-18
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
5dbj|AK103310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
6dbj|AK059632.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
7ref|XM_694611.1| PREDICTED: Danio rerio similar to SNF2 histone ... 42 2.3
8gb|AC152165.2| Mus musculus BAC clone RP24-159A20 from chromosom... 42 2.3
9gb|AC147054.4| Pan troglodytes BAC clone RP43-145A1 from 7, comp... 40 9.2
10ref|XM_600745.2| PREDICTED: Bos taurus similar to EF-hand domain... 40 9.2
11gb|AC147035.3| Pan troglodytes BAC clone RP43-104N19 from 7, com... 40 9.2
12gb|AY173030.1| Danio rerio zinc finger transcription factor deto... 40 9.2
13gb|AC117234.4| Mus musculus BAC clone RP23-410J2 from chromosome... 40 9.2
14ref|XM_646837.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 40 9.2
15emb|Z98048.1|HS408N23 Human DNA sequence from clone RP3-408N23 o... 40 9.2
16gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 9.2
17emb|X77921.1|EAAMASL E.amylovara (Ea7/74) ams- A, B, C, D, E, F,... 40 9.2
18emb|X75217.1|HRRNAHOX H.rufescens Hrox1 mRNA 40 9.2
19emb|AJ300463.1|EPY300463 Erwinia pyrifoliae partial operon (cpsA... 40 9.2
20gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, comp... 40 9.2
21ref|NM_178296.2| Danio rerio GLI-Kruppel family member 1 (gli1),... 40 9.2
22emb|AJ337879.1|HSA337879 Homo sapiens genomic sequence surroundi... 40 9.2
23dbj|AB065966.1| Homo sapiens gene for seven transmembrane helix ... 40 9.2 
>ref|NM_184896.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2442

 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Minus

                                                                        
Query: 532  ggggtagaaaagtatggcgttgaccctccacttgcccattgttttccatcaccagaataa 591
            |||||||||||||||||| |||||| |||| ||| |   |||||||||||||||  | ||
Sbjct: 2042 ggggtagaaaagtatggcattgaccttccatttgtcttctgttttccatcaccatcaaaa 1983

                                                                        
Query: 592  ggcgagcagccagacatcatgtagtaagagctgagatgttcctgcctacagatggtaggt 651
            ||||||||  ||||||||||||||||||| ||||| || ||||||||||| |  ||||| 
Sbjct: 1982 ggcgagcactcagacatcatgtagtaagaactgaggtgctcctgcctacatactgtaggc 1923

                           
Query: 652  gtttcgtgttgattt 666
            || || |||||||||
Sbjct: 1922 gtctcatgttgattt 1908
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Minus

                                                                            
Query: 532      ggggtagaaaagtatggcgttgaccctccacttgcccattgttttccatcaccagaataa 591
                |||||||||||||||||| |||||| |||| ||| |   |||||||||||||||  | ||
Sbjct: 31766403 ggggtagaaaagtatggcattgaccttccatttgtcttctgttttccatcaccatcaaaa 31766344

                                                                            
Query: 592      ggcgagcagccagacatcatgtagtaagagctgagatgttcctgcctacagatggtaggt 651
                ||||||||  ||||||||||||||||||| ||||| || ||||||||||| |  ||||| 
Sbjct: 31766343 ggcgagcactcagacatcatgtagtaagaactgaggtgctcctgcctacatactgtaggc 31766284

                               
Query: 652      gtttcgtgttgattt 666
                || || |||||||||
Sbjct: 31766283 gtctcatgttgattt 31766269



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 37/38 (97%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                      
Query: 109      gagactaacagctactgtacaggagtggagtgagccat 146
                ||||||||||||||||||||||| ||||||||||||||
Sbjct: 31767045 gagactaacagctactgtacagg-gtggagtgagccat 31767009
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>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete
             sequence
          Length = 134496

 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Minus

                                                                         
Query: 532   ggggtagaaaagtatggcgttgaccctccacttgcccattgttttccatcaccagaataa 591
             |||||||||||||||||| |||||| |||| ||| |   |||||||||||||||  | ||
Sbjct: 91629 ggggtagaaaagtatggcattgaccttccatttgtcttctgttttccatcaccatcaaaa 91570

                                                                         
Query: 592   ggcgagcagccagacatcatgtagtaagagctgagatgttcctgcctacagatggtaggt 651
             ||||||||  ||||||||||||||||||| ||||| || ||||||||||| |  ||||| 
Sbjct: 91569 ggcgagcactcagacatcatgtagtaagaactgaggtgctcctgcctacatactgtaggc 91510

                            
Query: 652   gtttcgtgttgattt 666
             || || |||||||||
Sbjct: 91509 gtctcatgttgattt 91495



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 37/38 (97%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                   
Query: 109   gagactaacagctactgtacaggagtggagtgagccat 146
             ||||||||||||||||||||||| ||||||||||||||
Sbjct: 92271 gagactaacagctactgtacagg-gtggagtgagccat 92235
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Minus

                                                                            
Query: 532      ggggtagaaaagtatggcgttgaccctccacttgcccattgttttccatcaccagaataa 591
                |||||||||||||||||| |||||| |||| ||| |   |||||||||||||||  | ||
Sbjct: 31856919 ggggtagaaaagtatggcattgaccttccatttgtcttctgttttccatcaccatcaaaa 31856860

                                                                            
Query: 592      ggcgagcagccagacatcatgtagtaagagctgagatgttcctgcctacagatggtaggt 651
                ||||||||  ||||||||||||||||||| ||||| || ||||||||||| |  ||||| 
Sbjct: 31856859 ggcgagcactcagacatcatgtagtaagaactgaggtgctcctgcctacatactgtaggc 31856800

                               
Query: 652      gtttcgtgttgattt 666
                || || |||||||||
Sbjct: 31856799 gtctcatgttgattt 31856785



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 37/38 (97%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                      
Query: 109      gagactaacagctactgtacaggagtggagtgagccat 146
                ||||||||||||||||||||||| ||||||||||||||
Sbjct: 31857561 gagactaacagctactgtacagg-gtggagtgagccat 31857525
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>dbj|AK103310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125G15, full
            insert sequence
          Length = 2834

 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Minus

                                                                        
Query: 532  ggggtagaaaagtatggcgttgaccctccacttgcccattgttttccatcaccagaataa 591
            |||||||||||||||||| |||||| |||| ||| |   |||||||||||||||  | ||
Sbjct: 2056 ggggtagaaaagtatggcattgaccttccatttgtcttctgttttccatcaccatcaaaa 1997

                                                                        
Query: 592  ggcgagcagccagacatcatgtagtaagagctgagatgttcctgcctacagatggtaggt 651
            ||||||||  ||||||||||||||||||| ||||| || ||||||||||| |  ||||| 
Sbjct: 1996 ggcgagcactcagacatcatgtagtaagaactgaggtgctcctgcctacatactgtaggc 1937

                           
Query: 652  gtttcgtgttgattt 666
            || || |||||||||
Sbjct: 1936 gtctcatgttgattt 1922



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 37/38 (97%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                  
Query: 109  gagactaacagctactgtacaggagtggagtgagccat 146
            ||||||||||||||||||||||| ||||||||||||||
Sbjct: 2698 gagactaacagctactgtacagg-gtggagtgagccat 2662
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>dbj|AK059632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A05, full
           insert sequence
          Length = 1299

 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Minus

                                                                       
Query: 532 ggggtagaaaagtatggcgttgaccctccacttgcccattgttttccatcaccagaataa 591
           |||||||||||||||||| |||||| |||| ||| |   |||||||||||||||  | ||
Sbjct: 762 ggggtagaaaagtatggcattgaccttccatttgtcttctgttttccatcaccatcaaaa 703

                                                                       
Query: 592 ggcgagcagccagacatcatgtagtaagagctgagatgttcctgcctacagatggtaggt 651
           ||||||||  ||||||||||||||||||| ||||| || ||||||||||| |  ||||| 
Sbjct: 702 ggcgagcactcagacatcatgtagtaagaactgaggtgctcctgcctacatactgtaggc 643

                          
Query: 652 gtttcgtgttgattt 666
           || || |||||||||
Sbjct: 642 gtctcatgttgattt 628



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 37/38 (97%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                  
Query: 109  gagactaacagctactgtacaggagtggagtgagccat 146
            ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1163 gagactaacagctactgtacagg-gtggagtgagccat 1127
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>ref|XM_694611.1| PREDICTED: Danio rerio similar to SNF2 histone linker PHD RING
           helicase (LOC571059), partial mRNA
          Length = 688

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 565 gcccattgttttccatcacca 585
           |||||||||||||||||||||
Sbjct: 571 gcccattgttttccatcacca 591
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>gb|AC152165.2| Mus musculus BAC clone RP24-159A20 from chromosome 5, complete sequence
          Length = 194519

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 411    tgtccttccccatcacctttc 431
              |||||||||||||||||||||
Sbjct: 163641 tgtccttccccatcacctttc 163661
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>gb|AC147054.4| Pan troglodytes BAC clone RP43-145A1 from 7, complete sequence
          Length = 153627

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 649   ggtgtttcgtgttgattttt 668
             ||||||||||||||||||||
Sbjct: 19609 ggtgtttcgtgttgattttt 19628
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>ref|XM_600745.2| PREDICTED: Bos taurus similar to EF-hand domain-containing protein 1
            (Swiprosin-2) (LOC522462), mRNA
          Length = 1842

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 415  cttccccatcacctttctct 434
            ||||||||||||||||||||
Sbjct: 1327 cttccccatcacctttctct 1346
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>gb|AC147035.3| Pan troglodytes BAC clone RP43-104N19 from 7, complete sequence
          Length = 177446

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 649    ggtgtttcgtgttgattttt 668
              ||||||||||||||||||||
Sbjct: 162815 ggtgtttcgtgttgattttt 162834
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>gb|AY173030.1| Danio rerio zinc finger transcription factor detour (gli1) mRNA,
            complete cds
          Length = 4726

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 241  ttgctctttatcagatccaggaactcga 268
            |||||||||  |||||||||||||||||
Sbjct: 3888 ttgctctttgacagatccaggaactcga 3861
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>gb|AC117234.4| Mus musculus BAC clone RP23-410J2 from chromosome 6, complete sequence
          Length = 193027

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 621   gctgagatgttcctgcctacagat 644
             ||||||| ||||||||||||||||
Sbjct: 89104 gctgagaagttcctgcctacagat 89081
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>ref|XM_646837.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (140.t00005) partial mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 553 gaccctccacttgcccattg 572
           ||||||||||||||||||||
Sbjct: 128 gaccctccacttgcccattg 109
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>emb|Z98048.1|HS408N23 Human DNA sequence from clone RP3-408N23 on chromosome 22q13, complete
             sequence
          Length = 97916

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 164   accaaaatggccatcaacatggcc 187
             ||||||||| ||||||||||||||
Sbjct: 78004 accaaaatgtccatcaacatggcc 77981
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     gcttcttggcctaaactact 222
               ||||||||||||||||||||
Sbjct: 2398047 gcttcttggcctaaactact 2398028
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>emb|X77921.1|EAAMASL E.amylovara (Ea7/74) ams- A, B, C, D, E, F, G, H, I, J, K and L genes
          Length = 17013

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 573  ttttccatcaccagaataag 592
            ||||||||||||||||||||
Sbjct: 4012 ttttccatcaccagaataag 3993
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>emb|X75217.1|HRRNAHOX H.rufescens Hrox1 mRNA
          Length = 1898

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 250 atcagatccaggaactcgag 269
           ||||||||||||||||||||
Sbjct: 712 atcagatccaggaactcgag 731
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>emb|AJ300463.1|EPY300463 Erwinia pyrifoliae partial operon (cpsABCGHI genes) for capsular
            polysaccharide synthesis
          Length = 7280

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 573  ttttccatcaccagaataag 592
            ||||||||||||||||||||
Sbjct: 3101 ttttccatcaccagaataag 3082
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>gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, complete sequence
          Length = 227245

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     caggactgactacaggagag 111
              ||||||||||||||||||||
Sbjct: 130046 caggactgactacaggagag 130027
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>ref|NM_178296.2| Danio rerio GLI-Kruppel family member 1 (gli1), mRNA
          Length = 4726

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 241  ttgctctttatcagatccaggaactcga 268
            |||||||||  |||||||||||||||||
Sbjct: 3888 ttgctctttgacagatccaggaactcga 3861
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>emb|AJ337879.1|HSA337879 Homo sapiens genomic sequence surrounding NotI site, clone NB6-274C
          Length = 1073

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 520 cttttcgtttctggggtagaaaag 543
           ||||||||||||||||| ||||||
Sbjct: 965 cttttcgtttctggggtggaaaag 942
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>dbj|AB065966.1| Homo sapiens gene for seven transmembrane helix receptor, complete
            cds, isolate:CBRC7TM_529
          Length = 20345

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 92   caggactgactacaggagag 111
            ||||||||||||||||||||
Sbjct: 7461 caggactgactacaggagag 7442


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,333,340
Number of Sequences: 3902068
Number of extensions: 5333340
Number of successful extensions: 92278
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92144
Number of HSP's gapped (non-prelim): 129
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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