ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22h22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 385 e-103
2dbj|AK064044.1| Oryza sativa (japonica cultivar-group) cDNA clon... 385 e-103
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
4dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
5dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
6ref|NM_118211.3| Arabidopsis thaliana 3-hydroxyisobutyrate dehyd... 50 0.009
7gb|AY093764.1| Arabidopsis thaliana AT4g20930/T13K14_90 mRNA seq... 50 0.009
8emb|BX827607.1|CNS0A3N7 Arabidopsis thaliana Full-length cDNA Co... 50 0.009
9emb|BX827269.1|CNS0A3OU Arabidopsis thaliana Full-length cDNA Co... 50 0.009
10emb|BX827246.1|CNS0A3N1 Arabidopsis thaliana Full-length cDNA Co... 50 0.009
11gb|AY086845.1| Arabidopsis thaliana clone 28479 mRNA, complete s... 50 0.009
12emb|AL929132.9| Mouse DNA sequence from clone RP23-346G8 on chro... 44 0.57
13ref|XM_509063.1| PREDICTED: Pan troglodytes similar to transcrip... 42 2.2
14gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, com... 42 2.2
15ref|XM_381851.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 42 2.2
16gb|AC163350.4| Mus musculus BAC clone RP23-186B12 from chromosom... 42 2.2
17gb|AC151275.3| Mus musculus BAC clone RP24-201F8 from chromosome... 42 2.2
18gb|AC165445.1| Mus musculus BAC clone RP23-10J16 from chromosome... 42 2.2
19emb|BX294119.5| Zebrafish DNA sequence from clone CH211-113D22 i... 42 2.2
20gb|AC004055.1|AC004055 Homo sapiens chromosome 4 clone B221D23 m... 42 2.2
21gb|AC004748.1| Homo sapiens chromosome 5, BAC clone 7h13 (LBNL H... 40 8.8
22gb|AC110224.7| Mus musculus chromosome 18, clone RP24-286H12, co... 40 8.8
23gb|AC166820.2| Mus musculus BAC clone RP24-287O2 from chromosome... 40 8.8
24gb|AC102693.9| Mus musculus chromosome 6, clone RP24-127M20, com... 40 8.8
25gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome... 40 8.8
26gb|AC131804.4| Mus musculus BAC clone RP24-553C6 from chromosome... 40 8.8
27gb|AC121577.3| Mus musculus BAC clone RP23-244N5 from 15, comple... 40 8.8
28emb|AL662785.5| Mouse DNA sequence from clone RP23-186N7 on chro... 40 8.8
29gb|AC008679.5| Homo sapiens chromosome 5 clone CTB-53D8, complet... 40 8.8
30gb|AC113376.2| Homo sapiens chromosome 5 clone RP11-262B5, compl... 40 8.8
31gb|AC027189.5| Homo sapiens chromosome 8, clone RP11-129J1, comp... 40 8.8
32gb|AC022605.7| Homo sapiens, clone RP11-154E16, complete sequence 40 8.8
33gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, c... 40 8.8
34dbj|BS000103.1| Pan troglodytes chromosome 22 clone:PTB-031J04, ... 40 8.8
35dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.8
36emb|AL928706.6| Mouse DNA sequence from clone RP23-54E16 on chro... 40 8.8
37dbj|AP000221.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL... 40 8.8
38dbj|AP000136.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL... 40 8.8
39dbj|AP000084.1| Homo sapiens genomic DNA of 21q22.1, APP related... 40 8.8 
>dbj|AK073050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033004O06, full
            insert sequence
          Length = 1751

 Score =  385 bits (194), Expect = e-103
 Identities = 341/390 (87%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtggcgaaacgcgcatgagaaatccttgaattcacagccctcgtcgcataacttccggta 306
            ||||||||| || |||||||| ||||||| ||||||||| ||  | |||| ||| |||||
Sbjct: 1249 gtggcgaaatgcacatgagaagtccttgagttcacagccatcagcacatagctttcggta 1190

                                                                        
Query: 307  aatctcaagtgcttcagaacccatgggacatttgaagccaactccagatgcagaggccat 366
            ||| |||||||| | |||||| | |||||| |||||||||||||||||||||||||||||
Sbjct: 1189 aatttcaagtgcctgagaaccaaagggacaattgaagccaactccagatgcagaggccat 1130

                                                                        
Query: 367  agccaaatccaaatctttagccattagtttggaggtgaaaccaccgtcataattcctcgc 426
             ||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||| 
Sbjct: 1129 ggccaaatccaaatctttggtcattagtttggaggtgaaaccaccatcatagttcctcga 1070

                                                                        
Query: 427  cgatggcacgcctgccattactccaggaactgggttatatgtgtcactactccagcatcg 486
             ||||||||  |   ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 1069 tgatggcacatccatcattactccaggaactgggttatatgtgtcactgctccagcagcg 1010

                                                                        
Query: 487  ggcgctagagcaattgaatatatctgtgagagtgcttgctttgatcccgagattctgacc 546
            ||| || ||||| |||||||| ||||| |||  ||| |||||||| ||||||||||||||
Sbjct: 1009 ggcacttgagcagttgaatatgtctgtaagaacgctagctttgatgccgagattctgacc 950

                                                                        
Query: 547  aagagcaaaggcctcagagaccccaagcatgctgatagccatggccatattgttacagat 606
            ||||||||| || || ||||| |||||||||||||| ||||| ||||| |||||||| ||
Sbjct: 949  aagagcaaaagcttcggagactccaagcatgctgatggccattgccatgttgttacaaat 890

                                          
Query: 607  ctttgcagccgagccattaccagccccgcc 636
            ||||||| |||||||||| |||||||||||
Sbjct: 889  ctttgcaaccgagccatttccagccccgcc 860
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>dbj|AK064044.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-D05, full
            insert sequence
          Length = 1340

 Score =  385 bits (194), Expect = e-103
 Identities = 341/390 (87%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtggcgaaacgcgcatgagaaatccttgaattcacagccctcgtcgcataacttccggta 306
            ||||||||| || |||||||| ||||||| ||||||||| ||  | |||| ||| |||||
Sbjct: 1126 gtggcgaaatgcacatgagaagtccttgagttcacagccatcagcacatagctttcggta 1067

                                                                        
Query: 307  aatctcaagtgcttcagaacccatgggacatttgaagccaactccagatgcagaggccat 366
            ||| |||||||| | |||||| | |||||| |||||||||||||||||||||||||||||
Sbjct: 1066 aatttcaagtgcctgagaaccaaagggacaattgaagccaactccagatgcagaggccat 1007

                                                                        
Query: 367  agccaaatccaaatctttagccattagtttggaggtgaaaccaccgtcataattcctcgc 426
             ||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||| 
Sbjct: 1006 ggccaaatccaaatctttggtcattagtttggaggtgaaaccaccatcatagttcctcga 947

                                                                        
Query: 427  cgatggcacgcctgccattactccaggaactgggttatatgtgtcactactccagcatcg 486
             ||||||||  |   ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 946  tgatggcacatccatcattactccaggaactgggttatatgtgtcactgctccagcagcg 887

                                                                        
Query: 487  ggcgctagagcaattgaatatatctgtgagagtgcttgctttgatcccgagattctgacc 546
            ||| || ||||| |||||||| ||||| |||  ||| |||||||| ||||||||||||||
Sbjct: 886  ggcacttgagcagttgaatatgtctgtaagaacgctagctttgatgccgagattctgacc 827

                                                                        
Query: 547  aagagcaaaggcctcagagaccccaagcatgctgatagccatggccatattgttacagat 606
            ||||||||| || || ||||| |||||||||||||| ||||| ||||| |||||||| ||
Sbjct: 826  aagagcaaaagcttcggagactccaagcatgctgatggccattgccatgttgttacaaat 767

                                          
Query: 607  ctttgcagccgagccattaccagccccgcc 636
            ||||||| |||||||||| |||||||||||
Sbjct: 766  ctttgcaaccgagccatttccagccccgcc 737
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  131 bits (66), Expect = 3e-27
 Identities = 120/138 (86%)
 Strand = Plus / Minus

                                                                            
Query: 476      ctccagcatcgggcgctagagcaattgaatatatctgtgagagtgcttgctttgatcccg 535
                |||||||| ||||| || ||||| |||||||| ||||| |||  ||| |||||||| |||
Sbjct: 27757754 ctccagcagcgggcacttgagcagttgaatatgtctgtaagaacgctagctttgatgccg 27757695

                                                                            
Query: 536      agattctgaccaagagcaaaggcctcagagaccccaagcatgctgatagccatggccata 595
                |||||||||||||||||||| || || ||||| |||||||||||||| ||||| ||||| 
Sbjct: 27757694 agattctgaccaagagcaaaagcttcggagactccaagcatgctgatggccattgccatg 27757635

                                  
Query: 596      ttgttacagatctttgca 613
                |||||||| |||||||||
Sbjct: 27757634 ttgttacaaatctttgca 27757617



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                            
Query: 387      ccattagtttggaggtgaaaccaccgtcataattcctcgccgatggcacgcctgccatta 446
                ||||||||||||||||||||||||| ||||| |||||||  ||||||||  |   |||||
Sbjct: 27757943 ccattagtttggaggtgaaaccaccatcatagttcctcgatgatggcacatccatcatta 27757884

                                            
Query: 447      ctccaggaactgggttatatgtgtcact 474
                ||||||||||||||||||||||||||||
Sbjct: 27757883 ctccaggaactgggttatatgtgtcact 27757856



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                            
Query: 311      tcaagtgcttcagaacccatgggacatttgaagccaactccagatgcagaggccatagcc 370
                |||||||| | |||||| | |||||| ||||||||||||||||||||||||||||| |||
Sbjct: 27758234 tcaagtgcctgagaaccaaagggacaattgaagccaactccagatgcagaggccatggcc 27758175

                              
Query: 371      aaatccaaatcttt 384
                ||||||||||||||
Sbjct: 27758174 aaatccaaatcttt 27758161
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>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1153E06
          Length = 174588

 Score =  131 bits (66), Expect = 3e-27
 Identities = 120/138 (86%)
 Strand = Plus / Minus

                                                                          
Query: 476    ctccagcatcgggcgctagagcaattgaatatatctgtgagagtgcttgctttgatcccg 535
              |||||||| ||||| || ||||| |||||||| ||||| |||  ||| |||||||| |||
Sbjct: 107009 ctccagcagcgggcacttgagcagttgaatatgtctgtaagaacgctagctttgatgccg 106950

                                                                          
Query: 536    agattctgaccaagagcaaaggcctcagagaccccaagcatgctgatagccatggccata 595
              |||||||||||||||||||| || || ||||| |||||||||||||| ||||| ||||| 
Sbjct: 106949 agattctgaccaagagcaaaagcttcggagactccaagcatgctgatggccattgccatg 106890

                                
Query: 596    ttgttacagatctttgca 613
              |||||||| |||||||||
Sbjct: 106889 ttgttacaaatctttgca 106872



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                          
Query: 387    ccattagtttggaggtgaaaccaccgtcataattcctcgccgatggcacgcctgccatta 446
              ||||||||||||||||||||||||| ||||| |||||||  ||||||||  |   |||||
Sbjct: 107198 ccattagtttggaggtgaaaccaccatcatagttcctcgatgatggcacatccatcatta 107139

                                          
Query: 447    ctccaggaactgggttatatgtgtcact 474
              ||||||||||||||||||||||||||||
Sbjct: 107138 ctccaggaactgggttatatgtgtcact 107111



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                          
Query: 311    tcaagtgcttcagaacccatgggacatttgaagccaactccagatgcagaggccatagcc 370
              |||||||| | |||||| | |||||| ||||||||||||||||||||||||||||| |||
Sbjct: 107489 tcaagtgcctgagaaccaaagggacaattgaagccaactccagatgcagaggccatggcc 107430

                            
Query: 371    aaatccaaatcttt 384
              ||||||||||||||
Sbjct: 107429 aaatccaaatcttt 107416
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>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710B08
          Length = 186991

 Score =  131 bits (66), Expect = 3e-27
 Identities = 120/138 (86%)
 Strand = Plus / Minus

                                                                         
Query: 476   ctccagcatcgggcgctagagcaattgaatatatctgtgagagtgcttgctttgatcccg 535
             |||||||| ||||| || ||||| |||||||| ||||| |||  ||| |||||||| |||
Sbjct: 60263 ctccagcagcgggcacttgagcagttgaatatgtctgtaagaacgctagctttgatgccg 60204

                                                                         
Query: 536   agattctgaccaagagcaaaggcctcagagaccccaagcatgctgatagccatggccata 595
             |||||||||||||||||||| || || ||||| |||||||||||||| ||||| ||||| 
Sbjct: 60203 agattctgaccaagagcaaaagcttcggagactccaagcatgctgatggccattgccatg 60144

                               
Query: 596   ttgttacagatctttgca 613
             |||||||| |||||||||
Sbjct: 60143 ttgttacaaatctttgca 60126



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                         
Query: 387   ccattagtttggaggtgaaaccaccgtcataattcctcgccgatggcacgcctgccatta 446
             ||||||||||||||||||||||||| ||||| |||||||  ||||||||  |   |||||
Sbjct: 60452 ccattagtttggaggtgaaaccaccatcatagttcctcgatgatggcacatccatcatta 60393

                                         
Query: 447   ctccaggaactgggttatatgtgtcact 474
             ||||||||||||||||||||||||||||
Sbjct: 60392 ctccaggaactgggttatatgtgtcact 60365



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                         
Query: 311   tcaagtgcttcagaacccatgggacatttgaagccaactccagatgcagaggccatagcc 370
             |||||||| | |||||| | |||||| ||||||||||||||||||||||||||||| |||
Sbjct: 60743 tcaagtgcctgagaaccaaagggacaattgaagccaactccagatgcagaggccatggcc 60684

                           
Query: 371   aaatccaaatcttt 384
             ||||||||||||||
Sbjct: 60683 aaatccaaatcttt 60670
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>ref|NM_118211.3| Arabidopsis thaliana 3-hydroxyisobutyrate dehydrogenase/
           phosphogluconate dehydrogenase (decarboxylating)
           AT4G20930 mRNA, complete cds
          Length = 1302

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                       
Query: 380 tctttagccattagtttggaggtgaaaccaccgtcataattcctcgccgatggcacgcct 439
           ||||||||||| |||||||||| |||||| || |  |||| ||| |  |||||||| |||
Sbjct: 921 tctttagccataagtttggaggcgaaaccgccattgtaatcccttgaagatggcacacct 862

                                                    
Query: 440 gccattactccaggaactgggttatatgtgtcactactcca 480
             ||| ||||| |||||||| || |||| |||||| |||||
Sbjct: 861 ttcatcactcctggaactggattgtatgcgtcactgctcca 821
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>gb|AY093764.1| Arabidopsis thaliana AT4g20930/T13K14_90 mRNA sequence
          Length = 1601

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                        
Query: 380  tctttagccattagtttggaggtgaaaccaccgtcataattcctcgccgatggcacgcct 439
            ||||||||||| |||||||||| |||||| || |  |||| ||| |  |||||||| |||
Sbjct: 1259 tctttagccataagtttggaggcgaaaccgccattgtaatcccttgaagatggcacacct 1200

                                                     
Query: 440  gccattactccaggaactgggttatatgtgtcactactcca 480
              ||| ||||| |||||||| || |||| |||||| |||||
Sbjct: 1199 ttcatcactcctggaactggattgtatgcgtcactgctcca 1159
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>emb|BX827607.1|CNS0A3N7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS83ZC09 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1303

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                       
Query: 380 tctttagccattagtttggaggtgaaaccaccgtcataattcctcgccgatggcacgcct 439
           ||||||||||| |||||||||| |||||| || |  |||| ||| |  |||||||| |||
Sbjct: 961 tctttagccataagtttggaggcgaaaccgccattgtaatcccttgaagatggcacacct 902

                                                    
Query: 440 gccattactccaggaactgggttatatgtgtcactactcca 480
             ||| ||||| |||||||| || |||| |||||| |||||
Sbjct: 901 ttcatcactcctggaactggattgtatgcgtcactgctcca 861
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>emb|BX827269.1|CNS0A3OU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS30ZC06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1286

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                       
Query: 380 tctttagccattagtttggaggtgaaaccaccgtcataattcctcgccgatggcacgcct 439
           ||||||||||| |||||||||| |||||| || |  |||| ||| |  |||||||| |||
Sbjct: 921 tctttagccataagtttggaggcgaaaccgccattgtaatcccttgaagatggcacacct 862

                                                    
Query: 440 gccattactccaggaactgggttatatgtgtcactactcca 480
             ||| ||||| |||||||| || |||| |||||| |||||
Sbjct: 861 ttcatcactcctggaactggattgtatgcgtcactgctcca 821
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>emb|BX827246.1|CNS0A3N1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS26ZE11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1299

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                       
Query: 380 tctttagccattagtttggaggtgaaaccaccgtcataattcctcgccgatggcacgcct 439
           ||||||||||| |||||||||| |||||| || |  |||| ||| |  |||||||| |||
Sbjct: 918 tctttagccataagtttggaggcgaaaccgccattgtaatcccttgaagatggcacacct 859

                                                    
Query: 440 gccattactccaggaactgggttatatgtgtcactactcca 480
             ||| ||||| |||||||| || |||| |||||| |||||
Sbjct: 858 ttcatcactcctggaactggattgtatgcgtcactgctcca 818
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>gb|AY086845.1| Arabidopsis thaliana clone 28479 mRNA, complete sequence
          Length = 1270

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                       
Query: 380 tctttagccattagtttggaggtgaaaccaccgtcataattcctcgccgatggcacgcct 439
           ||||||||||| |||||||||| |||||| || |  |||| ||| |  |||||||| |||
Sbjct: 917 tctttagccataagtttggaggcgaaaccgccattgtaatcccttgaagatggcacacct 858

                                                    
Query: 440 gccattactccaggaactgggttatatgtgtcactactcca 480
             ||| ||||| |||||||| || |||| |||||| |||||
Sbjct: 857 ttcatcactcctggaactggattgtatgcgtcactgctcca 817
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>emb|AL929132.9| Mouse DNA sequence from clone RP23-346G8 on chromosome 2, complete
             sequence
          Length = 129438

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 357   cagaggccatagccaaatccaa 378
             ||||||||||||||||||||||
Sbjct: 34329 cagaggccatagccaaatccaa 34350
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>ref|XM_509063.1| PREDICTED: Pan troglodytes similar to transcription factor CP2;
            Transcription factor CP2, alpha globin (LOC451900), mRNA
          Length = 2497

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 620  ccattaccagccccgccgcag 640
            |||||||||||||||||||||
Sbjct: 2158 ccattaccagccccgccgcag 2138
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>gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, complete sequence
          Length = 174095

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 269    tccttgaattcacagccctcg 289
              |||||||||||||||||||||
Sbjct: 111792 tccttgaattcacagccctcg 111772
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>ref|XM_381851.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01675.1)
           partial mRNA
          Length = 825

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 228 catccttgccggtgtagaagt 248
           |||||||||||||||||||||
Sbjct: 712 catccttgccggtgtagaagt 692
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>gb|AC163350.4| Mus musculus BAC clone RP23-186B12 from chromosome 9, complete sequence
          Length = 203468

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 269    tccttgaattcacagccctcg 289
              |||||||||||||||||||||
Sbjct: 199472 tccttgaattcacagccctcg 199492
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>gb|AC151275.3| Mus musculus BAC clone RP24-201F8 from chromosome 17, complete sequence
          Length = 190772

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 327   ccatgggacatttgaagccaa 347
             |||||||||||||||||||||
Sbjct: 64974 ccatgggacatttgaagccaa 64994
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>gb|AC165445.1| Mus musculus BAC clone RP23-10J16 from chromosome 17, complete sequence
          Length = 209118

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    ccatgggacatttgaagccaa 347
              |||||||||||||||||||||
Sbjct: 201204 ccatgggacatttgaagccaa 201224
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>emb|BX294119.5| Zebrafish DNA sequence from clone CH211-113D22 in linkage group 10,
              complete sequence
          Length = 167603

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    atttattttccaaaaccttgt 123
              |||||||||||||||||||||
Sbjct: 117498 atttattttccaaaaccttgt 117518
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>gb|AC004055.1|AC004055 Homo sapiens chromosome 4 clone B221D23 map 4q25, complete sequence
          Length = 109926

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 372   aatccaaatctttagccatta 392
             |||||||||||||||||||||
Sbjct: 95602 aatccaaatctttagccatta 95622
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>gb|AC004748.1| Homo sapiens chromosome 5, BAC clone 7h13 (LBNL H100), complete
             sequence
          Length = 110804

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   gagaacattattgttttatt 182
             ||||||||||||||||||||
Sbjct: 11145 gagaacattattgttttatt 11164
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>gb|AC110224.7| Mus musculus chromosome 18, clone RP24-286H12, complete sequence
          Length = 167379

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 351   cagatgcagaggccatagccaaat 374
             ||||||||||||||| ||||||||
Sbjct: 24682 cagatgcagaggccacagccaaat 24659
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>gb|AC166820.2| Mus musculus BAC clone RP24-287O2 from chromosome 15, complete sequence
          Length = 137033

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   ccttgtctgggcactgttca 137
             ||||||||||||||||||||
Sbjct: 43780 ccttgtctgggcactgttca 43799
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>gb|AC102693.9| Mus musculus chromosome 6, clone RP24-127M20, complete sequence
          Length = 191955

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    gtgcttcagaacccatggga 334
              ||||||||||||||||||||
Sbjct: 156817 gtgcttcagaacccatggga 156798
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>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence
          Length = 209579

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 351   cagatgcagaggccatagccaaat 374
             ||||||||||||||| ||||||||
Sbjct: 11781 cagatgcagaggccacagccaaat 11804
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>gb|AC131804.4| Mus musculus BAC clone RP24-553C6 from chromosome 1, complete sequence
          Length = 138699

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   gttgagtttgctgggatagc 211
             ||||||||||||||||||||
Sbjct: 67888 gttgagtttgctgggatagc 67869
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>gb|AC121577.3| Mus musculus BAC clone RP23-244N5 from 15, complete sequence
          Length = 200103

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    ccttgtctgggcactgttca 137
              ||||||||||||||||||||
Sbjct: 195047 ccttgtctgggcactgttca 195066
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>emb|AL662785.5| Mouse DNA sequence from clone RP23-186N7 on chromosome 11, complete
             sequence
          Length = 158968

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 504   atatatctgtgagagtgctt 523
             ||||||||||||||||||||
Sbjct: 80356 atatatctgtgagagtgctt 80375
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>gb|AC008679.5| Homo sapiens chromosome 5 clone CTB-53D8, complete sequence
          Length = 232613

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   gagaacattattgttttatt 182
             ||||||||||||||||||||
Sbjct: 19957 gagaacattattgttttatt 19938
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>gb|AC113376.2| Homo sapiens chromosome 5 clone RP11-262B5, complete sequence
          Length = 161498

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   gagaacattattgttttatt 182
             ||||||||||||||||||||
Sbjct: 66273 gagaacattattgttttatt 66254
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>gb|AC027189.5| Homo sapiens chromosome 8, clone RP11-129J1, complete sequence
          Length = 157325

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   agaaatccttgaattcacag 283
             ||||||||||||||||||||
Sbjct: 47398 agaaatccttgaattcacag 47379
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>gb|AC022605.7| Homo sapiens, clone RP11-154E16, complete sequence
          Length = 168875

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   agaaatccttgaattcacag 283
             ||||||||||||||||||||
Sbjct: 43215 agaaatccttgaattcacag 43234
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>gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, complete sequence
          Length = 205069

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   gagaaatccttgaattcaca 282
             ||||||||||||||||||||
Sbjct: 74055 gagaaatccttgaattcaca 74074
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>dbj|BS000103.1| Pan troglodytes chromosome 22 clone:PTB-031J04, map 22, complete
              sequences
          Length = 164274

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     ctagatttattttccaaaac 118
              ||||||||||||||||||||
Sbjct: 110212 ctagatttattttccaaaac 110231
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>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     ctagatttattttccaaaac 118
              ||||||||||||||||||||
Sbjct: 207720 ctagatttattttccaaaac 207739
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>emb|AL928706.6| Mouse DNA sequence from clone RP23-54E16 on chromosome 2, complete
             sequence
          Length = 205358

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   aaatctttagccattagttt 396
             ||||||||||||||||||||
Sbjct: 63565 aaatctttagccattagttt 63584
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>dbj|AP000221.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region,
            clone:S672, complete sequence
          Length = 89323

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 99   ctagatttattttccaaaac 118
            ||||||||||||||||||||
Sbjct: 7514 ctagatttattttccaaaac 7533
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>dbj|AP000136.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone
             B2291C14-R44F3, segment 1/10, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ctagatttattttccaaaac 118
             ||||||||||||||||||||
Sbjct: 68016 ctagatttattttccaaaac 68035
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>dbj|AP000084.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533
             region, segment 1/7
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ctagatttattttccaaaac 118
             ||||||||||||||||||||
Sbjct: 68016 ctagatttattttccaaaac 68035


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,800,412
Number of Sequences: 3902068
Number of extensions: 5800412
Number of successful extensions: 142486
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142366
Number of HSP's gapped (non-prelim): 115
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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