ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22h21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 1070 0.0
2emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 698 0.0
3emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 486 e-134
4ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 250 4e-63
5dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 250 4e-63
6dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 1e-60
7ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 184 2e-43
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
9dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
10gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 115 2e-22
11emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 84 6e-13
12dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 84 6e-13
13gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA 80 9e-12
14gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA 78 3e-11
15emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-speci... 72 2e-09
16gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypept... 66 1e-07
17gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypep... 62 2e-06
18emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD... 56 1e-04
19dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.002
20dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.002
21emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide p... 48 0.031
22emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS... 46 0.12
23gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.48
24dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complet... 44 0.48
25ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 ... 42 1.9
26gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 1.9
27gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.9
28gb|AY096544.1| Arabidopsis thaliana putative photosystem II poly... 42 1.9
29gb|AY070103.1| Arabidopsis thaliana putative photosystem II poly... 42 1.9
30gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-relat... 42 1.9
31emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Co... 42 1.9
32emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Co... 42 1.9
33emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Co... 42 1.9
34emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Co... 42 1.9
35emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Co... 42 1.9
36emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Co... 42 1.9
37gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete ... 42 1.9
38emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 6... 42 1.9
39gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone... 42 1.9
40gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 7.5
41gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, co... 40 7.5
42gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
43gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, co... 40 7.5
44gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
45gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, com... 40 7.5
46gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosom... 40 7.5
47gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 7.5
48gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 7.5
49gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosom... 40 7.5
50emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section... 40 7.5
51emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N... 40 7.5
52dbj|BS000618.1| Pan troglodytes chromosome Y clone:PTB-428B15, c... 40 7.5
53gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.5
54gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, comple... 40 7.5
55gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.5
56dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
57gb|AY696617.1| Pagrus major clone cm002740 microsatellite sequence 40 7.5
58dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor... 40 7.5
59dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
60gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, comple... 40 7.5
61dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full ... 40 7.5
62gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
63gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complet... 40 7.5 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score = 1070 bits (540), Expect = 0.0
 Identities = 549/551 (99%), Gaps = 1/551 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactgatttgcgggtagtgatatttgtatcc-ttacatatgtcctgacggttataatcc 59
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 555 ttactgatttgcgggtagtgatatttgtatccattacatatgtcctgacggttataatcc 496

                                                                       
Query: 60  gcactattatacacatcgtttggtgcatagcttggtttgctgcacataggcttcaggaag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gcactattatacacatcgtttggtgcatagcttggtttgctgcacataggcttcaggaag 436

                                                                       
Query: 120 ccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaagagtca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaagagtca 376

                                                                       
Query: 180 ctgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttggagaccact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttggagaccact 316

                                                                       
Query: 240 cttntggtgtgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaact 299
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttctggtgtgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaact 256

                                                                       
Query: 300 ggtaaacacccttccccttggctacccttccagacgcatcgacgccttccttgaacgcca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggtaaacacccttccccttggctacccttccagacgcatcgacgccttccttgaacgcca 196

                                                                       
Query: 360 ctccaccaccaggcccgtagggttgggcagtctggaccttcttcgccttcttggccacta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ctccaccaccaggcccgtagggttgggcagtctggaccttcttcgccttcttggccacta 136

                                                                       
Query: 420 tgaccaacgacggcctcgccgatggtcgcacgcctccaagcttggatcgttgtaacagag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgaccaacgacggcctcgccgatggtcgcacgcctccaagcttggatcgttgtaacagag 76

                                                                       
Query: 480 gagaggaagatggtttcagagccaaagatgccatgacacaggcagacatgttgtttgtgc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  gagaggaagatggtttcagagccaaagatgccatgacacaggcagacatgttgtttgtgc 16

                      
Query: 540 aacactcgctc 550
           |||||||||||
Sbjct: 15  aacactcgctc 5
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  698 bits (352), Expect = 0.0
 Identities = 370/375 (98%), Gaps = 2/375 (0%)
 Strand = Plus / Minus

                                                                       
Query: 167 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 318

                                                                       
Query: 227 cttggagaccactcttntggtgtgtatatagggctgtacccatcaacatttgctccatac 286
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 258

                                                                       
Query: 287 ttgtcgg-caaactggtaaacacccttccccttggctacccttcca-gacgcatcgacgc 344
           |||||||   |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 257 ttgtcggnhdaactggtaaacacccttccccttggctacccttccaagacgcatcgacgc 198

                                                                       
Query: 345 cttccttgaacgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcg 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cttccttgaacgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcg 138

                                                                       
Query: 405 ccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttgg 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttgg 78

                                                                       
Query: 465 atcgttgtaacagaggagaggaagatggtttcagagccaaagatgccatgacacaggcag 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  atcgttgtaacagaggagaggaagatggtttcagagccaaagatgccatgacacaggcag 18

                          
Query: 525 acatgttgtttgtgc 539
           |||||||||||||||
Sbjct: 17  acatgttgtttgtgc 3
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>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score =  486 bits (245), Expect = e-134
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 295 aaactggtaaacacccttccccttggctacccttccagacgcatcgacgccttccttgaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaactggtaaacacccttccccttggctacccttccagacgcatcgacgccttccttgaa 188

                                                                       
Query: 355 cgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcgccttcttggc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcgccttcttggc 128

                                                                       
Query: 415 cactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttggatcgttgtaa 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttggatcgttgtaa 68

                                                                       
Query: 475 cagaggagaggaagatggtttcagagccaaagatgccatgacacaggcagacatgttgtt 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  cagaggagaggaagatggtttcagagccaaagatgccatgacacaggcagacatgttgtt 8

                
Query: 535 tgtgc 539
           |||||
Sbjct: 7   tgtgc 3
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score =  250 bits (126), Expect = 4e-63
 Identities = 257/301 (85%)
 Strand = Plus / Minus

                                                                       
Query: 135 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 194
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 195 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttntggtgtgtata 254
             || | ||||||||||||||| || || ||| ||| |||||| |||| ||| || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 255 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 314
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                                                                       
Query: 315 ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 374
           ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 280 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 221

                                                                       
Query: 375 cgtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 434
           | ||||| ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 220 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 161

            
Query: 435 t 435
           |
Sbjct: 160 t 160



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 487 agatggtttcagagccaaagatgccatgacacaggcagacatgtt 531
           ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 108 agatggtttcagagccagagaagccatgacagaggcagccatgtt 64
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score =  250 bits (126), Expect = 4e-63
 Identities = 257/301 (85%)
 Strand = Plus / Minus

                                                                       
Query: 135 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 194
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 195 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttntggtgtgtata 254
             || | ||||||||||||||| || || ||| ||| |||||| |||| ||| || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 255 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 314
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                                                                       
Query: 315 ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 374
           ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 280 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 221

                                                                       
Query: 375 cgtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 434
           | ||||| ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 220 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 161

            
Query: 435 t 435
           |
Sbjct: 160 t 160



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 487 agatggtttcagagccaaagatgccatgacacaggcagacatgtt 531
           ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 108 agatggtttcagagccagagaagccatgacagaggcagccatgtt 64
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score =  242 bits (122), Expect = 1e-60
 Identities = 256/301 (85%)
 Strand = Plus / Minus

                                                                       
Query: 135 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 194
           |||||||||||| ||| ||||| |  ||| ||||||||||||| | |||||||||||  |
Sbjct: 461 tgtagacaagaatagcgccgccaactagacttccagcaagagtgattgcccagagaagta 402

                                                                       
Query: 195 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttntggtgtgtata 254
             || | ||||||||||||||| || || ||| ||| |||||| |||| ||| || ||||
Sbjct: 401 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 342

                                                                       
Query: 255 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 314
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 341 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 282

                                                                       
Query: 315 ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 374
           ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 281 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 222

                                                                       
Query: 375 cgtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 434
           | ||||| ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 221 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 162

            
Query: 435 t 435
           |
Sbjct: 161 t 161



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 487 agatggtttcagagccaaagatgccatgacacaggcagacatgtt 531
           ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 109 agatggtttcagagccagagaagccatgacagaggcagccatgtt 65
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>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  184 bits (93), Expect = 2e-43
 Identities = 176/204 (86%)
 Strand = Plus / Minus

                                                                       
Query: 116 gaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaaga 175
           ||||||||||| |||||| |||||||||||||||||||  ||||||||||||||| ||||
Sbjct: 401 gaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccagaaaga 342

                                                                       
Query: 176 gtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttggagac 235
           || ||||||||||| |||| ||| ||||||||||||  |||||| || |||||||| |||
Sbjct: 341 gtgactgcccagagcaacaaccctgtctttcctccagtataaacatcaccacttggtgac 282

                                                                       
Query: 236 cactcttntggtgtgtatatagggctgtacccatcaacatttgctccatacttgtcggca 295
           || || | |||  | ||||| |||||||| ||||||||||| ||||||||||||  ||||
Sbjct: 281 cattcctctgggttatatattgggctgtatccatcaacattagctccatacttgctggca 222

                                   
Query: 296 aactggtaaacacccttccccttg 319
           |||||||| || || |||||||||
Sbjct: 221 aactggtagacccctttccccttg 198
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 1e-23
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                           
Query: 109     gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 168
               |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                       
Query: 169     agcaagagtcactgcccagagaaacagccccgtctttcct 208
               || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 2490062 agaaagagtgactgcccagagcaacaaccctgtctttcct 2490023



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                         
Query: 260     ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 317
               ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 2487136 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 2487079



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                           
Query: 315     ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 374
               ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 2486995 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 2486936

                
Query: 375     c 375
               |
Sbjct: 2486935 c 2486935



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 260     ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 317
               ||||| ||||||||||| ||||||||||||  |||||||||||| || || |||||||
Sbjct: 2489753 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 2489696



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                        
Query: 135     tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 191
               |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 2487628 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 2487572



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 487     agatggtttcagagccaaagatgccatgacacaggcagacatgtt 531
               ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 2486597 agatggtttcagagccagagaagccatgacagaggcagccatgtt 2486553



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 49/59 (83%)
 Strand = Plus / Minus

                                                                          
Query: 206     cctccaacataaacgtcgccacttggagaccactcttntggtgtgtatatagggctgta 264
               ||||||||||| || || ||| ||| |||||| |||| ||| || ||||| ||||||||
Sbjct: 2487433 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 2487375
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  119 bits (60), Expect = 1e-23
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                         
Query: 109   gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 168
             |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                     
Query: 169   agcaagagtcactgcccagagaaacagccccgtctttcct 208
             || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 55042 agaaagagtgactgcccagagcaacaaccctgtctttcct 55003



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 260   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 317
             ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 52116 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 52059



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                         
Query: 315   ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 374
             ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 51975 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 51916

              
Query: 375   c 375
             |
Sbjct: 51915 c 51915



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 260   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 317
             ||||| ||||||||||| ||||||||||||  |||||||||||| || || |||||||
Sbjct: 54733 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 54676



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 135   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 191
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 52608 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 52552



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 487   agatggtttcagagccaaagatgccatgacacaggcagacatgtt 531
             ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 51577 agatggtttcagagccagagaagccatgacagaggcagccatgtt 51533



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 49/59 (83%)
 Strand = Plus / Minus

                                                                        
Query: 206   cctccaacataaacgtcgccacttggagaccactcttntggtgtgtatatagggctgta 264
             ||||||||||| || || ||| ||| |||||| |||| ||| || ||||| ||||||||
Sbjct: 52413 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 52355
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>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score =  115 bits (58), Expect = 2e-22
 Identities = 153/185 (82%)
 Strand = Plus / Minus

                                                                       
Query: 134 ctgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaac 193
           ||||| |||||||||||||| ||   ||||| |||||||||||| | |||||||| ||  
Sbjct: 474 ctgtacacaagaagagcacctccacccagaagtccagcaagagtgattgcccagacaatg 415

                                                                       
Query: 194 agccccgtctttcctccaacataaacgtcgccacttggagaccactcttntggtgtgtat 253
           || || ||  |||||||||||||||| || ||||| |||||||| || | ||||| ||| 
Sbjct: 414 agaccagtggttcctccaacataaacatcaccactaggagaccattcgtctggtgagtag 355

                                                                       
Query: 254 atagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttc 313
           || |||||||| |||||||||||||| ||||| |||||  |||| ||||| |||||||| 
Sbjct: 354 atcgggctgtagccatcaacatttgcaccatatttgtccacaaattggtagacacccttt 295

                
Query: 314 ccctt 318
           |||||
Sbjct: 294 ccctt 290
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>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10
          Length = 639

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 206 cctccaacataaacgtcgccacttggagaccactcttntggtgtgtatatagggctgtac 265
           ||||||||||| || || |||||||||||||| || | ||   |||| || |||||||| 
Sbjct: 342 cctccaacatagacatcaccacttggagaccagtcatctgtgttgtagatggggctgtat 283

                                                                
Query: 266 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccctt 318
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||
Sbjct: 282 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttccctt 230
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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 260   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 317
             ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 60883 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 60826



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                         
Query: 315   ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 374
             ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 60742 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 60683

              
Query: 375   c 375
             |
Sbjct: 60682 c 60682



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 135   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 191
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 61375 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 61319



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 487   agatggtttcagagccaaagatgccatgacacaggcagacatgtt 531
             ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 60344 agatggtttcagagccagagaagccatgacagaggcagccatgtt 60300



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 49/59 (83%)
 Strand = Plus / Minus

                                                                        
Query: 206   cctccaacataaacgtcgccacttggagaccactcttntggtgtgtatatagggctgta 264
             ||||||||||| || || ||| ||| |||||| |||| ||| || ||||| ||||||||
Sbjct: 61180 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 61122
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>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA
          Length = 438

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                       
Query: 206 cctccaacataaacgtcgccacttggagaccactcttntggtgtgtatatagggctgtac 265
           ||||||||||| || || || ||||||||||| || | ||   |||| || |||||||| 
Sbjct: 197 cctccaacatagacatcaccgcttggagaccagtcatctgtgttgtagatggggctgtat 138

                                                                  
Query: 266 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 320
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||||
Sbjct: 137 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttcccttgg 83
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>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA
          Length = 373

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 206 cctccaacataaacgtcgccacttggagaccactcttntggtgtgtatatagggctgtac 265
           ||||||||||| || || || |||| |||||| || | ||   |||| || |||||||| 
Sbjct: 133 cctccaacatanacatcaccgcttgnagaccagtcatctgtgttgtagatggggctgtat 74

                                                                  
Query: 266 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 320
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||||
Sbjct: 73  ccatcaacatttgctccatatttgtcaacnaattggtaaacaccctttcccttgg 19
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>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene
          Length = 560

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 206 cctccaacataaacgtcgccacttggagaccactcttntggtgtgtatatagggctgtac 265
           ||||||||||| || || ||||||||||||||||| | ||   |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccactcatctgtgttgtagatgggactgtat 264

                                                                  
Query: 266 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 320
           ||||||||||| |||||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 209
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>gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypeptide mRNA, complete
           cds
          Length = 584

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 254 atagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttc 313
           ||||| ||||| ||||||||||| || ||||| |||||  ||||||||||||||||||| 
Sbjct: 276 ataggactgtatccatcaacattagcaccatatttgtccacaaactggtaaacacccttt 217

                
Query: 314 ccctt 318
           |||||
Sbjct: 216 ccctt 212
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>gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypeptide of photosystem II,
           complete cds
          Length = 590

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 75/87 (86%), Gaps = 2/87 (2%)
 Strand = Plus / Minus

                                                                       
Query: 260 ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacaccctt-cccctt 318
           ||||| ||||||||||| || |||||||||||  |||| |||||||||||||| ||| ||
Sbjct: 292 ctgtaaccatcaacattggcaccatacttgtcaacaaattggtaaacacccttgcccgtt 233

                                      
Query: 319 ggctacccttccagacgcatcgacgcc 345
           ||||  ||||||||||| ||| |||||
Sbjct: 232 ggct-tccttccagacgaatcaacgcc 207
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>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein
          Length = 540

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                       
Query: 206 cctccaacataaacgtcgccacttggagaccactcttntggtgtgtatatagggctgtac 265
           ||||||||||| || || |||||||||||||| || |  |   |||| || || ||||| 
Sbjct: 300 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 241

                                                                  
Query: 266 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 320
           ||||||||||| |||||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 240 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 186
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>dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT17N21, TM0403,
             complete sequence
          Length = 97807

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 260   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 317
             ||||| ||||||||||| || || ||||||||  || |||||||||||||||| ||||
Sbjct: 84239 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 84296
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>dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT26P21, TM0279b,
             complete sequence
          Length = 28275

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 260   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 317
             ||||| ||||||||||| || || ||||||||  || |||||||||||||||| ||||
Sbjct: 14725 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 14668
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>emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide precursor of photosystem II
          Length = 632

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 92/115 (80%)
 Strand = Plus / Minus

                                                                       
Query: 206 cctccaacataaacgtcgccacttggagaccactcttntggtgtgtatatagggctgtac 265
           ||||||||||| || || |||||||||||||| || |  |   |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 264

                                                                  
Query: 266 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 320
           ||||||||||| || ||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagccccatatttgtcaacatattggtacacaccctttcccttgg 209
to top
>emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS1 gene
          Length = 3699

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 206  cctccaacataaacgtcgccacttggagaccactc 240
            ||||||||||| || || |||||||||||||||||
Sbjct: 3042 cctccaacatagacatcaccacttggagaccactc 3008



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 260  ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 317
            ||||| ||||||||||| |||||||| |||||  || | ||||| |||||||| ||||
Sbjct: 2892 ctgtatccatcaacattagctccatatttgtcaacatattggtacacaccctttccct 2835
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 427    cgacggcctcgccgatggtcgc 448
              ||||||||||||||||||||||
Sbjct: 577535 cgacggcctcgccgatggtcgc 577556
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>dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complete cds
          Length = 910

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 281 ccatacttgtcggcaaactggtaaacacccttcccctt 318
           |||||||||||  |||| ||||| ||||||||||||||
Sbjct: 355 ccatacttgtcaacaaattggtagacacccttcccctt 318
to top
>ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 mRNA, complete cds
          Length = 647

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 353 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 294

            
Query: 309 c 309
           |
Sbjct: 293 c 293
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 396     ccttcttcgccttcttggcca 416
               |||||||||||||||||||||
Sbjct: 2184158 ccttcttcgccttcttggcca 2184178
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 396     ccttcttcgccttcttggcca 416
               |||||||||||||||||||||
Sbjct: 2523514 ccttcttcgccttcttggcca 2523534
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>gb|AY096544.1| Arabidopsis thaliana putative photosystem II polypeptide
           (At1g79040) mRNA, complete cds
          Length = 454

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 286 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 227

            
Query: 309 c 309
           |
Sbjct: 226 c 226
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>gb|AY070103.1| Arabidopsis thaliana putative photosystem II polypeptide protein
           (At1g79040) mRNA, complete cds
          Length = 645

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 336 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 277

            
Query: 309 c 309
           |
Sbjct: 276 c 276
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>gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-related kinase (PRK2) mRNA,
            partial cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  aacataaacgtcgccacttgg 231
            |||||||||||||||||||||
Sbjct: 1465 aacataaacgtcgccacttgg 1485
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>emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZA04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 309 c 309
           |
Sbjct: 259 c 259
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>emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 309 c 309
           |
Sbjct: 259 c 259
to top
>emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 576

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 315 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 256

            
Query: 309 c 309
           |
Sbjct: 255 c 255
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>emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS56ZH04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 309 c 309
           |
Sbjct: 259 c 259
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>emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 579

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 318 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 259

            
Query: 309 c 309
           |
Sbjct: 258 c 258
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>emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 588

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 321 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 262

            
Query: 309 c 309
           |
Sbjct: 261 c 261
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>gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete sequence
          Length = 611

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 353 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 294

            
Query: 309 c 309
           |
Sbjct: 293 c 293
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>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24
            gene)
          Length = 1310

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 249  tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 308
            |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 1028 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 969

             
Query: 309  c 309
            |
Sbjct: 968  c 968
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>gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone bif11) photosystem II
           10kDa polypeptide mRNA, complete cds
          Length = 551

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 249 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaa 297
           |||| ||||| ||||| |||||||| || || |||||||||||| ||||
Sbjct: 301 tgtagataggactgtatccatcaacgttcgcaccatacttgtcgacaaa 253
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 267     catcaacatttgctccatac 286
               ||||||||||||||||||||
Sbjct: 1176164 catcaacatttgctccatac 1176145
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>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence
          Length = 197242

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 130  agtactgtagacaagaagag 149
            ||||||||||||||||||||
Sbjct: 4569 agtactgtagacaagaagag 4550
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>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0064E13, complete sequence
          Length = 150158

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   gacgccttccttgaacgcca 359
             ||||||||||||||||||||
Sbjct: 82024 gacgccttccttgaacgcca 82005
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>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence
          Length = 153145

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   acacccttccccttggctac 324
             ||||||||||||||||||||
Sbjct: 35663 acacccttccccttggctac 35644
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>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22,
              complete sequence
          Length = 177557

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    gacgccttccttgaacgcca 359
              ||||||||||||||||||||
Sbjct: 117754 gacgccttccttgaacgcca 117735
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>gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, complete sequence
          Length = 213500

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     atttgtatccttacatatgtcctg 46
              |||||||||||| |||||||||||
Sbjct: 145129 atttgtatcctttcatatgtcctg 145152
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>gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosome 6, complete sequence
          Length = 174507

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 515    acacaggcagacatgttgtt 534
              ||||||||||||||||||||
Sbjct: 118442 acacaggcagacatgttgtt 118461
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>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   ccagcagaattccagcaaga 175
             ||||||||||||||||||||
Sbjct: 25861 ccagcagaattccagcaaga 25880
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  ccagcagaattccagcaaga 175
            ||||||||||||||||||||
Sbjct: 7108 ccagcagaattccagcaaga 7089
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>gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosome 7, complete sequence
          Length = 199810

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   acagaggagaggaagatggt 493
             ||||||||||||||||||||
Sbjct: 84446 acagaggagaggaagatggt 84465
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>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to
              3809670
          Length = 200690

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     ttggtttgctgcacataggc 110
              ||||||||||||||||||||
Sbjct: 125094 ttggtttgctgcacataggc 125075
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>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes
          Length = 14047

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   ttggtttgctgcacataggc 110
            ||||||||||||||||||||
Sbjct: 1312 ttggtttgctgcacataggc 1331
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>dbj|BS000618.1| Pan troglodytes chromosome Y clone:PTB-428B15, complete sequences
          Length = 103410

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    atttgtatccttacatatgtcctg 46
             |||||||||||| |||||||||||
Sbjct: 42122 atttgtatcctttcatatgtcctg 42099
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 23       atttgtatccttacatatgtcctg 46
                |||||||||||| |||||||||||
Sbjct: 14902130 atttgtatcctttcatatgtcctg 14902153
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>gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, complete sequence
          Length = 187624

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   taaacacccttccccttggc 321
             ||||||||||||||||||||
Sbjct: 65315 taaacacccttccccttggc 65296
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 335     gcatcgacgccttccttgaa 354
               ||||||||||||||||||||
Sbjct: 2504750 gcatcgacgccttccttgaa 2504769
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 340      gacgccttccttgaacgcca 359
                ||||||||||||||||||||
Sbjct: 20071089 gacgccttccttgaacgcca 20071070



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 340      gacgccttccttgaacgcca 359
                ||||||||||||||||||||
Sbjct: 19940687 gacgccttccttgaacgcca 19940668
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>gb|AY696617.1| Pagrus major clone cm002740 microsatellite sequence
          Length = 734

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 490 tggtttcagagccaaagatg 509
           ||||||||||||||||||||
Sbjct: 408 tggtttcagagccaaagatg 389
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>dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: citb004m11
          Length = 2001

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  catcgtttggtgcatagctt 92
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442
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>dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H02, full
           insert sequence
          Length = 3198

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 340 gacgccttccttgaacgcca 359
           ||||||||||||||||||||
Sbjct: 240 gacgccttccttgaacgcca 221
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>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    agtactgtagacaagaagag 149
              ||||||||||||||||||||
Sbjct: 166431 agtactgtagacaagaagag 166412
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>dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full insert sequence
          Length = 2001

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  catcgtttggtgcatagctt 92
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 340      gacgccttccttgaacgcca 359
                ||||||||||||||||||||
Sbjct: 20357765 gacgccttccttgaacgcca 20357746



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 340      gacgccttccttgaacgcca 359
                ||||||||||||||||||||
Sbjct: 20225666 gacgccttccttgaacgcca 20225647
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>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence
          Length = 190414

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    acagaggagaggaagatggt 493
              ||||||||||||||||||||
Sbjct: 170269 acagaggagaggaagatggt 170288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,429,331
Number of Sequences: 3902068
Number of extensions: 4429331
Number of successful extensions: 84675
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84253
Number of HSP's gapped (non-prelim): 411
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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