ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CD59_RAT (P27274) CD59 glycoprotein precursor (Membrane attack c... 29 5.2
2BT2A1_HUMAN (Q7KYR7) Butyrophilin subfamily 2 member A1 precursor 29 5.2
3NO12B_MEDSA (Q40339) Early nodulin 12B precursor (N-12B) 28 8.9

>CD59_RAT (P27274) CD59 glycoprotein precursor (Membrane attack complex|
           inhibition factor) (MACIF) (MAC-inhibitory protein)
           (MAC-IP) (Protectin)
          Length = 126

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 98  DACWVVPRKNNLISAGWNGSDCKAKVILSQL 6
           DAC V      +    W  SDC AK ILS+L
Sbjct: 46  DACLVAVSGKQVYQQCWRFSDCNAKFILSRL 76



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>BT2A1_HUMAN (Q7KYR7) Butyrophilin subfamily 2 member A1 precursor|
          Length = 528

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 36  VRSIPTSRDEIILPWNHPTRISQKIQTPPTKRPPHNQHLPA 158
           + SIP S   +  PW+              ++PPHN HLPA
Sbjct: 480 IESIPWSHSHVDKPWSF-------------QQPPHNTHLPA 507



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>NO12B_MEDSA (Q40339) Early nodulin 12B precursor (N-12B)|
          Length = 113

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 75  PWNHPTRISQKIQTPPTKRPPHNQHLPA 158
           P N P +    +  PP K PP ++H PA
Sbjct: 80  PVNKPPQKESPVHKPPRKEPPTHKHPPA 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,409,882
Number of Sequences: 219361
Number of extensions: 716883
Number of successful extensions: 2719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2716
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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