ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22h01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK064935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O24, full insert sequence Length = 2427 Score = 220 bits (111), Expect = 3e-54 Identities = 308/377 (81%) Strand = Plus / Minus Query: 1 aaagcaacgaagaatatcggggagacgaggaagaccntgtaggggacgatctgcccaatc 60 |||||||| |||||||| ||||| || ||||||| | |||| |||| |||||| | || Sbjct: 2289 aaagcaaccaagaatattggggaaacaaggaagagcatgtacgggatgatctgatcgatg 2230 Query: 61 cccacctngggctcgtccgggttcgcgtagtagttcctctgcccgccgaactggtcgaag 120 |||| || || ||||| || |||||||||||| |||| || || |||| ||||||| Sbjct: 2229 cccatctcaggttcgtctagggcagcgtagtagttcttctggcccccaaacttgtcgaag 2170 Query: 121 tacccctcgtagcccgtgttgcggggcaccggcacgccatcgaccttcaggaagtccgcc 180 ||| ||||||||||||||| ||||||| || || | ||||||| ||||||| | Sbjct: 2169 tacttctcgtagcccgtgttacggggcaaaggggagctgttcaccttcatgaagtccatc 2110 Query: 181 gcctgaaagctgaacatgaacatttttgccttcttgctgactcgatcgtttgggtggtat 240 ||||||||||||||||||||||| ||||| ||||| |||| | | ||||| || | | Sbjct: 2109 gcctgaaagctgaacatgaacatgtttgctttcttactgatttcagaatttggatgattt 2050 Query: 241 ttcagcttgctatacatgcccatggcttncttggacctgcagagtgaatctagacagatg 300 || || ||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 2049 ttgagtttgctgtacatgctcatggcttccttggacctgcagagtgaatctagacagatg 1990 Query: 301 gaccactggagagcagncattccatgaagttcggtcttaaagtncnnannctgcatnact 360 |||||||| | ||||| ||||||||||||||| ||||| |||| | | |||||| ||| Sbjct: 1989 gaccactgcaaagcagccattccatgaagttcagtcttgaagtccacagcctgcatcact 1930 Query: 361 ttttcataataaggcaa 377 ||||||||||||||||| Sbjct: 1929 ttttcataataaggcaa 1913
>dbj|AK061992.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C02, full insert sequence Length = 908 Score = 220 bits (111), Expect = 3e-54 Identities = 308/377 (81%) Strand = Plus / Minus Query: 1 aaagcaacgaagaatatcggggagacgaggaagaccntgtaggggacgatctgcccaatc 60 |||||||| |||||||| ||||| || ||||||| | |||| |||| |||||| | || Sbjct: 848 aaagcaaccaagaatattggggaaacaaggaagagcatgtacgggatgatctgatcgatg 789 Query: 61 cccacctngggctcgtccgggttcgcgtagtagttcctctgcccgccgaactggtcgaag 120 |||| || || ||||| || |||||||||||| |||| || || |||| ||||||| Sbjct: 788 cccatctcaggttcgtctagggcagcgtagtagttcttctggcccccaaacttgtcgaag 729 Query: 121 tacccctcgtagcccgtgttgcggggcaccggcacgccatcgaccttcaggaagtccgcc 180 ||| ||||||||||||||| ||||||| || || | ||||||| ||||||| | Sbjct: 728 tacttctcgtagcccgtgttacggggcaaaggggagctgttcaccttcatgaagtccatc 669 Query: 181 gcctgaaagctgaacatgaacatttttgccttcttgctgactcgatcgtttgggtggtat 240 ||||||||||||||||||||||| ||||| ||||| |||| | | ||||| || | | Sbjct: 668 gcctgaaagctgaacatgaacatgtttgctttcttactgatttcagaatttggatgattt 609 Query: 241 ttcagcttgctatacatgcccatggcttncttggacctgcagagtgaatctagacagatg 300 || || ||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 608 ttgagtttgctgtacatgctcatggcttccttggacctgcagagtgaatctagacagatg 549 Query: 301 gaccactggagagcagncattccatgaagttcggtcttaaagtncnnannctgcatnact 360 |||||||| | ||||| ||||||||||||||| ||||| |||| | | |||||| ||| Sbjct: 548 gaccactgcaaagcagccattccatgaagttcagtcttgaagtccacagcctgcatcact 489 Query: 361 ttttcataataaggcaa 377 ||||||||||||||||| Sbjct: 488 ttttcataataaggcaa 472
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 95.6 bits (48), Expect = 1e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 275 acctgcagagtgaatctagacagatggaccactggagagcagncattccatgaagttcgg 334 |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| | Sbjct: 85527 acctgcagagtgaatctagacagatggaccactgcaaagcagccattccatgaagttcag 85468 Query: 335 tct 337 ||| Sbjct: 85467 tct 85465 Score = 67.9 bits (34), Expect = 3e-08 Identities = 119/148 (80%) Strand = Plus / Minus Query: 1 aaagcaacgaagaatatcggggagacgaggaagaccntgtaggggacgatctgcccaatc 60 |||||||| |||||||| ||||| || ||||||| | |||| |||| |||||| | || Sbjct: 86334 aaagcaaccaagaatattggggaaacaaggaagagcatgtacgggatgatctgatcgatg 86275 Query: 61 cccacctngggctcgtccgggttcgcgtagtagttcctctgcccgccgaactggtcgaag 120 |||| || || ||||| || |||||||||||| |||| || || |||| ||||||| Sbjct: 86274 cccatctcaggttcgtctagggcagcgtagtagttcttctggcccccaaacttgtcgaag 86215 Query: 121 tacccctcgtagcccgtgttgcggggca 148 ||| ||||||||||||||| ||||||| Sbjct: 86214 tacttctcgtagcccgtgttacggggca 86187 Score = 60.0 bits (30), Expect = 7e-06 Identities = 80/97 (82%) Strand = Plus / Minus Query: 182 cctgaaagctgaacatgaacatttttgccttcttgctgactcgatcgtttgggtggtatt 241 |||||||||||||||||||||| ||||| ||||| |||| | | ||||| || | || Sbjct: 86008 cctgaaagctgaacatgaacatgtttgctttcttactgatttcagaatttggatgatttt 85949 Query: 242 tcagcttgctatacatgcccatggcttncttggacct 278 | || ||||| ||||||| |||||||| ||||||||| Sbjct: 85948 tgagtttgctgtacatgctcatggcttccttggacct 85912 Score = 48.1 bits (24), Expect = 0.025 Identities = 26/27 (96%) Strand = Plus / Minus Query: 351 ctgcatnactttttcataataaggcaa 377 |||||| |||||||||||||||||||| Sbjct: 85239 ctgcatcactttttcataataaggcaa 85213
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 95.6 bits (48), Expect = 1e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 275 acctgcagagtgaatctagacagatggaccactggagagcagncattccatgaagttcgg 334 |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| | Sbjct: 18292315 acctgcagagtgaatctagacagatggaccactgcaaagcagccattccatgaagttcag 18292256 Query: 335 tct 337 ||| Sbjct: 18292255 tct 18292253 Score = 67.9 bits (34), Expect = 3e-08 Identities = 119/148 (80%) Strand = Plus / Minus Query: 1 aaagcaacgaagaatatcggggagacgaggaagaccntgtaggggacgatctgcccaatc 60 |||||||| |||||||| ||||| || ||||||| | |||| |||| |||||| | || Sbjct: 18293122 aaagcaaccaagaatattggggaaacaaggaagagcatgtacgggatgatctgatcgatg 18293063 Query: 61 cccacctngggctcgtccgggttcgcgtagtagttcctctgcccgccgaactggtcgaag 120 |||| || || ||||| || |||||||||||| |||| || || |||| ||||||| Sbjct: 18293062 cccatctcaggttcgtctagggcagcgtagtagttcttctggcccccaaacttgtcgaag 18293003 Query: 121 tacccctcgtagcccgtgttgcggggca 148 ||| ||||||||||||||| ||||||| Sbjct: 18293002 tacttctcgtagcccgtgttacggggca 18292975 Score = 60.0 bits (30), Expect = 7e-06 Identities = 80/97 (82%) Strand = Plus / Minus Query: 182 cctgaaagctgaacatgaacatttttgccttcttgctgactcgatcgtttgggtggtatt 241 |||||||||||||||||||||| ||||| ||||| |||| | | ||||| || | || Sbjct: 18292796 cctgaaagctgaacatgaacatgtttgctttcttactgatttcagaatttggatgatttt 18292737 Query: 242 tcagcttgctatacatgcccatggcttncttggacct 278 | || ||||| ||||||| |||||||| ||||||||| Sbjct: 18292736 tgagtttgctgtacatgctcatggcttccttggacct 18292700 Score = 48.1 bits (24), Expect = 0.025 Identities = 26/27 (96%) Strand = Plus / Minus Query: 351 ctgcatnactttttcataataaggcaa 377 |||||| |||||||||||||||||||| Sbjct: 18292027 ctgcatcactttttcataataaggcaa 18292001
>gb|AY112133.1| Zea mays CL6510_1 mRNA sequence Length = 527 Score = 79.8 bits (40), Expect = 7e-12 Identities = 54/59 (91%) Strand = Plus / Minus Query: 247 ttgctatacatgcccatggcttncttggacctgcagagtgaatctagacagatggacca 305 ||||||||||||| ||| |||| |||||||||||| |||||||| |||||||||||||| Sbjct: 272 ttgctatacatgctcattgcttccttggacctgcaaagtgaatcaagacagatggacca 214 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 181 gcctgaaagctgaacatgaacatttttgccttcttgctga 220 |||||||||||||||| |||||| ||||| |||||||||| Sbjct: 338 gcctgaaagctgaacacgaacatgtttgctttcttgctga 299
>ref|XM_854016.1| PREDICTED: Canis familiaris similar to eukaryotic translation elongation factor 1 alpha 1, transcript variant 2 (LOC475210), mRNA Length = 1646 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 ctgaaagctgaacatgaacat 203 ||||||||||||||||||||| Sbjct: 266 ctgaaagctgaacatgaacat 286
>ref|XM_844470.1| PREDICTED: Canis familiaris similar to eukaryotic translation elongation factor 1 alpha 1, transcript variant 1 (LOC475210), mRNA Length = 1662 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 ctgaaagctgaacatgaacat 203 ||||||||||||||||||||| Sbjct: 282 ctgaaagctgaacatgaacat 302
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 tgcccgccgaactggtcgaag 120 ||||||||||||||||||||| Sbjct: 1081469 tgcccgccgaactggtcgaag 1081449
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ctgcccgccgaactggtcga 118 |||||||||||||||||||| Sbjct: 715493 ctgcccgccgaactggtcga 715474
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ctgcccgccgaactggtcga 118 |||||||||||||||||||| Sbjct: 5167489 ctgcccgccgaactggtcga 5167508
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 gcaccggcacgccatcgacc 165 |||||||||||||||||||| Sbjct: 2342772 gcaccggcacgccatcgacc 2342753 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,280,421 Number of Sequences: 3902068 Number of extensions: 2280421 Number of successful extensions: 37493 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37377 Number of HSP's gapped (non-prelim): 116 length of query: 452 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 430 effective length of database: 17,147,199,772 effective search space: 7373295901960 effective search space used: 7373295901960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
