ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22g20 |
|---|---|
| Clone Library Name | barley_pub |
>FBXL2_HUMAN (Q9UKC9) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) (F-box protein FBL2/FBL3) Length = 423 Score = 42.4 bits (98), Expect = 0.002 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Frame = -2 Query: 694 LVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILH-CKALEDVLLR 521 L L L+ C + +SS + IS G NL L+L C QIT DGI +++ C+ L+ +LLR Sbjct: 132 LKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLR 190
>YKK7_CAEEL (P34284) Hypothetical F-box/LRR-repeat protein C02F5.7| Length = 466 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Frame = -2 Query: 694 LVELALSGCKLL-DSSSQEIISSGWPNLTCLHLEECGQITVDGISSILHCKALEDV 530 L EL+LS C+L+ D S Q + S L L L+ C Q+T +S + HCKAL+ + Sbjct: 359 LRELSLSHCELITDESIQNLASKHRETLNVLELDNCPQLTDSTLSHLRHCKALKRI 414 Score = 38.1 bits (87), Expect = 0.029 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -2 Query: 697 NLVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSIL-HCKALEDVLLR 521 NL L LSGC LL + ++ G L L +E+C I+ I+S+ +C AL ++ L Sbjct: 306 NLKVLELSGCTLLGDNGFIPLARGCRQLERLDMEDCSLISDHTINSLANNCTALRELSLS 365 Query: 520 HTGRGIGRTIITDAIRELPLLRKLALDLC 434 H +I A + L L LD C Sbjct: 366 HCELITDESIQNLASKHRETLNVLELDNC 394 Score = 31.6 bits (70), Expect = 2.7 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 12/101 (11%) Frame = -2 Query: 694 LVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQIT---VDGISSILH--------- 551 L EL+L GC+ + S+ +S PNL L L C ++T + + H Sbjct: 125 LKELSLKGCENVHDSALRTFTSRCPNLEHLSLYRCKRVTDASCENLGRYCHKLNYLNLEN 184 Query: 550 CKALEDVLLRHTGRGIGRTIITDAIRELPLLRKLALDLCDA 428 C ++ D +++ G G P L L + CDA Sbjct: 185 CSSITDRAMKYIGDG------------CPNLSYLNISWCDA 213
>FBXL2_MOUSE (Q8BH16) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) Length = 423 Score = 40.4 bits (93), Expect = 0.006 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Frame = -2 Query: 694 LVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILH-CKALEDVLLR 521 L L L+ C + +SS + IS G NL L+L C QIT +GI +++ C+ L+ +LLR Sbjct: 132 LKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLR 190 Score = 33.5 bits (75), Expect = 0.71 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 12/92 (13%) Frame = -2 Query: 712 LHGICNLVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILH------ 551 + G L L L GC L+ + + I + L L+L+ C +IT DG+ I Sbjct: 178 VRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQ 237 Query: 550 ------CKALEDVLLRHTGRGIGRTIITDAIR 473 C L D L G R + +A R Sbjct: 238 ALCLSGCSNLTDASLTALGLNCPRLQVLEAAR 269
>FXL20_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 38.9 bits (89), Expect = 0.017 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Frame = -2 Query: 712 LHGICNLVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILH-CKALE 536 + G L L L GC L+ + + I + P L L+L+ C QIT +G+ +I C L+ Sbjct: 191 VRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQ 250 Query: 535 DVLLRHTGRGIGRTIITDAI-----RELPLLRKLALDLC-DASEGGFDT 407 + G + ITDAI + P LR L + C ++ GF T Sbjct: 251 SLC------ASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTT 293 Score = 36.6 bits (83), Expect = 0.083 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 12/73 (16%) Frame = -2 Query: 694 LVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILH------------ 551 L L L+ C + + S + +S G P L L++ C Q+T DGI +++ Sbjct: 145 LRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKG 204 Query: 550 CKALEDVLLRHTG 512 C LED L++ G Sbjct: 205 CTQLEDEALKYIG 217 Score = 33.5 bits (75), Expect = 0.71 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Frame = -2 Query: 706 GICNLVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSIL-HCKALEDV 530 G L L SGC + + + P L L + C Q+T G +++ +C LE + Sbjct: 245 GCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKM 304 Query: 529 LLRHTGRGIGRTIITDAIRELPLLRKLALDLCD 431 L + T+I +I P L+ L+L C+ Sbjct: 305 DLEECVQITDSTLIQLSI-HCPRLQVLSLSHCE 336
>FXL20_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 38.9 bits (89), Expect = 0.017 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Frame = -2 Query: 712 LHGICNLVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILH-CKALE 536 + G L L L GC L+ + + I + P L L+L+ C QIT +G+ +I C L+ Sbjct: 191 VRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQ 250 Query: 535 DVLLRHTGRGIGRTIITDAI-----RELPLLRKLALDLC-DASEGGFDT 407 + G + ITDAI + P LR L + C ++ GF T Sbjct: 251 SLC------ASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTT 293 Score = 36.6 bits (83), Expect = 0.083 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 12/73 (16%) Frame = -2 Query: 694 LVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILH------------ 551 L L L+ C + + S + +S G P L L++ C Q+T DGI +++ Sbjct: 145 LRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKG 204 Query: 550 CKALEDVLLRHTG 512 C LED L++ G Sbjct: 205 CTQLEDEALKYIG 217 Score = 33.5 bits (75), Expect = 0.71 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Frame = -2 Query: 706 GICNLVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSIL-HCKALEDV 530 G L L SGC + + + P L L + C Q+T G +++ +C LE + Sbjct: 245 GCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKM 304 Query: 529 LLRHTGRGIGRTIITDAIRELPLLRKLALDLCD 431 L + T+I +I P L+ L+L C+ Sbjct: 305 DLEECVQITDSTLIQLSI-HCPRLQVLSLSHCE 336
>FXL20_RAT (Q9QZH7) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 276 Score = 36.6 bits (83), Expect = 0.083 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 12/73 (16%) Frame = -2 Query: 694 LVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILH------------ 551 L L L+ C + + S + +S G P L L++ C Q+T DGI +++ Sbjct: 145 LRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKG 204 Query: 550 CKALEDVLLRHTG 512 C LED L++ G Sbjct: 205 CTQLEDEALKYIG 217 Score = 36.2 bits (82), Expect = 0.11 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = -2 Query: 712 LHGICNLVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILH-CKALE 536 + G L L L GC L+ + + I + P L L+L+ C QIT +G+ +I C L+ Sbjct: 191 VRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQ 250 Query: 535 DVLLRHTGRGIGRTIITDAI 476 + G + ITDAI Sbjct: 251 SLC------ASGCSNITDAI 264
>FBXL4_HUMAN (Q9UKA2) F-box/LRR-repeat protein 4 (F-box and leucine-rich repeat| protein 4) (F-box protein FBL4/FBL5) Length = 621 Score = 35.4 bits (80), Expect = 0.19 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Frame = -2 Query: 694 LVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILHCKALEDVLLRHT 515 LV L LS L+ + E+IS PNL L+L C ++ + I +L+ ++L T Sbjct: 377 LVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFNHIAKLCSLKRLVLYRT 436 Query: 514 GRGIGRTIITDAIRELPLLRKLALDLCDASEGGFDTPNYPEG---KMMRSVRMSRCK 353 + +T + + L+ L+L C E +D G K +R++ + RCK Sbjct: 437 --KVEQTALLSILNFCSELQHLSLGSCVMIE-DYDVIASMIGAKCKKLRTLDLWRCK 490
>FXL13_HUMAN (Q8NEE6) F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat| protein 13) Length = 735 Score = 34.7 bits (78), Expect = 0.32 Identities = 21/58 (36%), Positives = 28/58 (48%) Frame = -2 Query: 688 ELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILHCKALEDVLLRHT 515 EL LS C L +S +S PNL L L C +T GI I++ +L + L T Sbjct: 483 ELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGT 540 Score = 31.6 bits (70), Expect = 2.7 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = -2 Query: 700 CNLVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSILHCKAL 539 C L ++ G K + +S + I +PNL+ +++ +C IT + S+ K L Sbjct: 400 CKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQL 453
>LRC29_HUMAN (Q8WV35) Leucine-rich repeat-containing protein 29| (F-box/LRR-repeat protein 9) (F-box and leucine-rich repeat protein 9) (F-box protein FBL9) Length = 223 Score = 33.5 bits (75), Expect = 0.71 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Frame = -2 Query: 706 GICNLVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQI---TVDGISSILHCKALE 536 G +L LALS C L +S WP L L+L C Q+ T+D I C+ L Sbjct: 124 GCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSSCSQLIEQTLDAIGQA--CRQLR 181 Query: 535 DVLLRHTGRGIGRTIITDAIRELP 464 VL T GI + +LP Sbjct: 182 -VLDVATCPGINMAAVRRFQAQLP 204
>POF2_SCHPO (O74783) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) (F-box protein pof2) Length = 463 Score = 31.6 bits (70), Expect = 2.7 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 12/81 (14%) Frame = -2 Query: 727 MI*PFLHGICNLVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQITVDGISSIL-- 554 +I L+ NLV + S L ++ E IS PNL L++ CG + G+ I+ Sbjct: 111 LIGKLLYQNLNLVTINFSNIFSLPANILEYISDNCPNLKALNIGNCGLVEDTGMVQIIKR 170 Query: 553 ----------HCKALEDVLLR 521 +C+ L DV L+ Sbjct: 171 CPYLNRLIIPNCRKLTDVSLQ 191
>COX10_NEUCR (Q7S5E7) Protoheme IX farnesyltransferase, mitochondrial precursor| (EC 2.5.1.-) (Heme O synthase) Length = 535 Score = 31.2 bits (69), Expect = 3.5 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = +1 Query: 25 PPSKKFGDSILLV*QICRPPLYLDIPQKNNAKEKK*TVTPSRHVAVFLSKQRNKFSYMTI 204 PP+ ++LL +C+ P + +PQ + T+T SR A S++ +++ Sbjct: 3 PPTSTLRRNVLLDRVVCQQPRLVIVPQSRLPGTLRRTLTTSRAPAATSSQRLKAGYFVSN 62 Query: 205 SFLPR 219 +FLPR Sbjct: 63 AFLPR 67
>FXL13_MOUSE (Q8CDU4) F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat| protein 13) Length = 790 Score = 31.2 bits (69), Expect = 3.5 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -2 Query: 694 LVELALSGCKLLDSSSQEIISSGWPNLTCLHLEECGQIT---VDGISSIL 554 L EL L+ C LL SS +S PNL L+L C +T ++ I+S+L Sbjct: 532 LRELNLTNCSLLGDSSVIRLSERCPNLHYLNLRNCEHLTDLAIEYIASML 581 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,788,245 Number of Sequences: 219361 Number of extensions: 1963645 Number of successful extensions: 4803 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4660 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4803 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7706249192 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
