ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22g20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189430.1| Oryza sativa (japonica cultivar-group), predic... 133 9e-28
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 103 8e-19
3dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic D... 103 8e-19
4dbj|AK121465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 7e-04
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.010
7emb|AL831811.5|CNS08CAO Oryza sativa chromosome 12, . BAC OJ1561... 50 0.010
8gb|AF039051.1| Caenorhabditis elegans cosmid C14C6, complete seq... 46 0.16
9tpg|BK003484.1| TPA: TPA_inf: Drosophila melanogaster HDC02721 (... 46 0.16
10gb|AF022981.3| Caenorhabditis elegans cosmid W03F9, complete seq... 46 0.16
11emb|Z82056.1|CET26H5 Caenorhabditis elegans Cosmid T26H5, comple... 46 0.16
12gb|AE003648.2| Drosophila melanogaster chromosome 2L, section 57... 46 0.16
13gb|AC024744.1| Caenorhabditis elegans cosmid Y108G3AL, complete ... 46 0.16
14gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.65
15ref|XM_954411.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.65
16ref|XM_331020.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.65
17gb|AC079756.4| Homo sapiens BAC clone RP11-108J15 from 7, comple... 44 0.65
18gb|AC183606.2| Pan troglodytes BAC clone CH251-286M5 from chromo... 44 0.65
19emb|AL121983.13|HSA160H22 Human DNA sequence from clone RP11-160... 44 0.65
20gb|AC027667.20| Homo sapiens 12 BAC RP11-972L6 (Roswell Park Can... 44 0.65
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.65
22dbj|AK068085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.65
23emb|AL772395.12| Mouse DNA sequence from clone RP23-39O1 on chro... 44 0.65
24ref|NM_005104.2| Homo sapiens bromodomain containing 2 (BRD2), mRNA 42 2.6
25gb|AC024800.1| Caenorhabditis elegans cosmid Y49F6A, complete se... 42 2.6
26gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 2.6
27ref|XM_753087.1| Ustilago maydis 521 hypothetical protein (UM020... 42 2.6
28emb|X96670.1|HSRING3GE H.sapiens RING3 gene 42 2.6
29ref|XM_538345.2| PREDICTED: Canis familiaris similar to transcri... 42 2.6
30ref|XM_852361.1| PREDICTED: Canis familiaris similar to transcri... 42 2.6
31emb|X62083.1|HSFSHMR H.sapiens mRNA for Drosophila female steril... 42 2.6
32emb|Z96104.1|HSO27 Human DNA sequence from clone XX-O27 on chrom... 42 2.6
33emb|Z84497.1|HSO14 Human DNA sequence from clone XX-O14 on chrom... 42 2.6
34emb|AL935042.6| Human DNA sequence from clone DAQB-96B10 on chro... 42 2.6
35emb|BX005422.5| Human DNA sequence from clone DASS-32K24 on chro... 42 2.6
36emb|AL645941.11| Human DNA sequence from clone XXbac-181M17 on c... 42 2.6
37emb|AL662845.5| Human DNA sequence from clone XXbac-136A3 on chr... 42 2.6
38gb|AC087828.6| Homo sapiens chromosome 15, clone RP11-292P13, co... 42 2.6
39emb|Z50018.1|KMDNAMIG1 K.marxianus DNA for MIG1 gene encoding Zi... 42 2.6
40ref|XM_778208.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.6
41emb|AL832722.1|HSM804033 Homo sapiens mRNA; cDNA DKFZp313H139 (f... 42 2.6
42emb|CR759798.3| Human DNA sequence from clone DAMC-226H3 on chro... 42 2.6
43emb|BX648109.1|HSM808256 Homo sapiens mRNA; cDNA DKFZp686E1432 (... 42 2.6
44gb|AC122108.2| Homo sapiens chromosome 15 clone CTD-2008A1 map 1... 42 2.6
45gb|AC120778.2| Homo sapiens chromosome 15 clone CTD-2163N2 map 1... 42 2.6
46dbj|AK056504.1| Homo sapiens cDNA FLJ31942 fis, clone NT2RP70067... 42 2.6
47gb|AC093154.2| Homo sapiens chromosome 1 clone RP3-445O10, compl... 42 2.6
48gb|AC091117.5| Homo sapiens chromosome 15 clone RP11-109D20 map ... 42 2.6
49gb|AC091245.2| Homo sapiens chromosome 15 clone RP11-456H13 map ... 42 2.6
50emb|BX908719.9| Human DNA sequence from clone DAMA-147C13 on chr... 42 2.6
51gb|AC018901.8| Homo sapiens chromosome 15 clone RP11-292P13 map ... 42 2.6
52gb|AC091043.12| Homo sapiens chromosome 18, clone RP11-595B24, c... 42 2.6
53dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
54emb|BX813329.2| Human DNA sequence from clone DASS-101M19 on chr... 42 2.6
55gb|U67252.1|HSPSORD7 Homo sapiens sorbitol dehydrogenase (SORD) ... 42 2.6
56dbj|D42040.1|HUMKIA9001 Homo sapiens KIAA9001 mRNA, complete cds 42 2.6
57gb|M80613.1|HUMFSHG Human homolog of Drosophila female sterile h... 42 2.6 
>ref|NM_189430.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1923

 Score =  133 bits (67), Expect = 9e-28
 Identities = 91/99 (91%)
 Strand = Plus / Minus

                                                                        
Query: 596  ctcaaggtgtaagcatgtcaagtttggccacccagacgagattatctcttgagagctgga 655
            |||||||||||| || |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 1854 ctcaaggtgtaaacaagtcaagtttggccacccagacgagattaactcttgagagttgga 1795

                                                   
Query: 656  gtctaggagtttgcaaccagagagagcaagttcaactaa 694
            ||| ||||||||||||||||| || | ||||||||||||
Sbjct: 1794 gtcaaggagtttgcaaccagacagtgaaagttcaactaa 1756
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  103 bits (52), Expect = 8e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                            
Query: 514      ccgtgtgccttagtaacacatcttccaaagctttacagtgtaaaatagaagaaatcccat 573
                |||||||||  ||||||| |||||||||||||||||||| |||||| ||||||| ||| |
Sbjct: 42714239 ccgtgtgccgaagtaacagatcttccaaagctttacagtttaaaattgaagaaaccccgt 42714180

                                        
Query: 574      caactgttatctgaccacattcct 597
                ||| ||||||||||||||||||||
Sbjct: 42714179 caagtgttatctgaccacattcct 42714156



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                        
Query: 595      cctcaaggtgtaagcatgtcaagtttggccacccagacgagattatctcttgagag 650
                ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct: 42713789 cctcaaggtgtaaacaagtcaagtttggccacccagacgagattaactcttgagag 42713734



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 651      ctggagtctaggagtttgcaaccagagagagcaagttcaactaa 694
                |||||||| ||||||||||||||||| || | ||||||||||||
Sbjct: 42713657 ctggagtcaaggagtttgcaaccagacagtgaaagttcaactaa 42713614



 Score = 44.1 bits (22), Expect = 0.65
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 480      gcatctgttatgatggttcttccgatacct 509
                ||||| ||||||||||||||||| ||||||
Sbjct: 42715332 gcatcagttatgatggttcttccaatacct 42715303



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 287      gttcgagttcgagctcgagctcgag 311
                ||||||| |||||||||||||||||
Sbjct: 42581381 gttcgagctcgagctcgagctcgag 42581357
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>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1656_A11
          Length = 148887

 Score =  103 bits (52), Expect = 8e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                         
Query: 514   ccgtgtgccttagtaacacatcttccaaagctttacagtgtaaaatagaagaaatcccat 573
             |||||||||  ||||||| |||||||||||||||||||| |||||| ||||||| ||| |
Sbjct: 47004 ccgtgtgccgaagtaacagatcttccaaagctttacagtttaaaattgaagaaaccccgt 46945

                                     
Query: 574   caactgttatctgaccacattcct 597
             ||| ||||||||||||||||||||
Sbjct: 46944 caagtgttatctgaccacattcct 46921



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                     
Query: 595   cctcaaggtgtaagcatgtcaagtttggccacccagacgagattatctcttgagag 650
             ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct: 46554 cctcaaggtgtaaacaagtcaagtttggccacccagacgagattaactcttgagag 46499



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 651   ctggagtctaggagtttgcaaccagagagagcaagttcaactaa 694
             |||||||| ||||||||||||||||| || | ||||||||||||
Sbjct: 46422 ctggagtcaaggagtttgcaaccagacagtgaaagttcaactaa 46379



 Score = 44.1 bits (22), Expect = 0.65
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 480   gcatctgttatgatggttcttccgatacct 509
             ||||| ||||||||||||||||| ||||||
Sbjct: 48097 gcatcagttatgatggttcttccaatacct 48068
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>dbj|AK121465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145L11, full
            insert sequence
          Length = 5681

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 468  aactctctgatagcatctgttatgatggttcttccgatacctctacc 514
            ||||||||||| ||||| || |||||||||||||| |||||| ||||
Sbjct: 5390 aactctctgatggcatcagtcatgatggttcttccaatacctttacc 5344
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 470     ctctctgatagcatctgttatgatggttcttccgatacctctacc 514
               ||||||||| ||||| || |||||||||||||| |||||| ||||
Sbjct: 5027020 ctctctgatggcatcagtcatgatggttcttccaatacctttacc 5026976
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 470     ctctctgatagcatctgttatgatggttcttccgatacctctacc 514
               ||||||||| ||||| || |||||||||||||| |||||| ||||
Sbjct: 5027002 ctctctgatggcatcagtcatgatggttcttccaatacctttacc 5026958
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>emb|AL831811.5|CNS08CAO Oryza sativa chromosome 12, . BAC OJ1561_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 91053

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 470   ctctctgatagcatctgttatgatggttcttccgatacctctacc 514
             ||||||||| ||||| || |||||||||||||| |||||| ||||
Sbjct: 70394 ctctctgatggcatcagtcatgatggttcttccaatacctttacc 70350
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>gb|AF039051.1| Caenorhabditis elegans cosmid C14C6, complete sequence
          Length = 39986

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 678   agagcaagttcaactaaattaca 700
             |||||||||||||||||||||||
Sbjct: 37461 agagcaagttcaactaaattaca 37439
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>tpg|BK003484.1| TPA: TPA_inf: Drosophila melanogaster HDC02721 (HDC02721) gene,
           complete cds
          Length = 733

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 282 ttcgagttcgagttcgagctcga 304
           |||||||||||||||||||||||
Sbjct: 610 ttcgagttcgagttcgagctcga 588
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>gb|AF022981.3| Caenorhabditis elegans cosmid W03F9, complete sequence
          Length = 42879

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 678   agagcaagttcaactaaattaca 700
             |||||||||||||||||||||||
Sbjct: 37833 agagcaagttcaactaaattaca 37811



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 678   agagcaagttcaactaaattaca 700
             |||||||||||||||||||||||
Sbjct: 37691 agagcaagttcaactaaattaca 37713
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>emb|Z82056.1|CET26H5 Caenorhabditis elegans Cosmid T26H5, complete sequence
          Length = 19736

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 678  agagcaagttcaactaaattaca 700
            |||||||||||||||||||||||
Sbjct: 2439 agagcaagttcaactaaattaca 2461
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>gb|AE003648.2| Drosophila melanogaster chromosome 2L, section 57 of 83 of the complete
              sequence
          Length = 284900

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 282    ttcgagttcgagttcgagctcga 304
              |||||||||||||||||||||||
Sbjct: 187845 ttcgagttcgagttcgagctcga 187823



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 282    ttcgagttcgagttcgagctcga 304
              |||||||||||||||||||||||
Sbjct: 152848 ttcgagttcgagttcgagctcga 152826
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>gb|AC024744.1| Caenorhabditis elegans cosmid Y108G3AL, complete sequence
          Length = 35018

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 678  agagcaagttcaactaaattaca 700
            |||||||||||||||||||||||
Sbjct: 1954 agagcaagttcaactaaattaca 1932



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 678  agagcaagttcaactaaattaca 700
            |||||||||||||||||||||||
Sbjct: 1812 agagcaagttcaactaaattaca 1834
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>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 284   cgagttcgagttcgagctcgag 305
             ||||||||||||||||||||||
Sbjct: 73797 cgagttcgagttcgagctcgag 73818
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>ref|XM_954411.1| Neurospora crassa OR74A hypothetical protein (NCU02245.1) partial
            mRNA
          Length = 3372

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 282  ttcgagttcgagttcgagctcgagctcgag 311
            |||||||||||||||||| ||||| |||||
Sbjct: 3068 ttcgagttcgagttcgagttcgagttcgag 3039
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>ref|XM_331020.1| Neurospora crassa OR74A hypothetical protein (NCU02245.1) partial
            mRNA
          Length = 3372

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 282  ttcgagttcgagttcgagctcgagctcgag 311
            |||||||||||||||||| ||||| |||||
Sbjct: 3068 ttcgagttcgagttcgagttcgagttcgag 3039
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>gb|AC079756.4| Homo sapiens BAC clone RP11-108J15 from 7, complete sequence
          Length = 168347

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 654    gagtctaggagtttgcaaccag 675
              ||||||||||||||||||||||
Sbjct: 118186 gagtctaggagtttgcaaccag 118165
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>gb|AC183606.2| Pan troglodytes BAC clone CH251-286M5 from chromosome 12, complete
             sequence
          Length = 171738

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 650   gctggagtctaggagtttgcaaccag 675
             ||||||||||||||||||| ||||||
Sbjct: 10545 gctggagtctaggagtttgaaaccag 10520
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>emb|AL121983.13|HSA160H22 Human DNA sequence from clone RP11-160H22 on chromosome 1q23.2-24.3
             Contains three novel genes, a ribosomal protein L30
             (RPL30) pseudogene, the 3' end of a novel gene, the 5' end
             of a novel gene (KIAA2025) and a CpG island, complete
             sequence
          Length = 165436

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 654   gagtctaggagtttgcaaccag 675
             ||||||||||||||||||||||
Sbjct: 23942 gagtctaggagtttgcaaccag 23921
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>gb|AC027667.20| Homo sapiens 12 BAC RP11-972L6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157801

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 650   gctggagtctaggagtttgcaaccag 675
             ||||||||||||||||||| ||||||
Sbjct: 15864 gctggagtctaggagtttgaaaccag 15839
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 284     cgagttcgagttcgagctcgag 305
               ||||||||||||||||||||||
Sbjct: 4187318 cgagttcgagttcgagctcgag 4187339
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>dbj|AK068085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131P13, full
           insert sequence
          Length = 1515

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 284 cgagttcgagttcgagctcgag 305
           ||||||||||||||||||||||
Sbjct: 359 cgagttcgagttcgagctcgag 338
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>emb|AL772395.12| Mouse DNA sequence from clone RP23-39O1 on chromosome 4, complete
              sequence
          Length = 183256

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 78     accacctctctacctggacatt 99
              ||||||||||||||||||||||
Sbjct: 177334 accacctctctacctggacatt 177355
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>ref|NM_005104.2| Homo sapiens bromodomain containing 2 (BRD2), mRNA
          Length = 4693

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 238  ggctgctccactccagcacga 258
            |||||||||||||||||||||
Sbjct: 1027 ggctgctccactccagcacga 1007
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>gb|AC024800.1| Caenorhabditis elegans cosmid Y49F6A, complete sequence
          Length = 24330

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 680  agcaagttcaactaaattaca 700
            |||||||||||||||||||||
Sbjct: 4106 agcaagttcaactaaattaca 4086



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 680  agcaagttcaactaaattaca 700
            |||||||||||||||||||||
Sbjct: 3968 agcaagttcaactaaattaca 3988
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 278    cgccttcgagttcgagttcgagctcgagctcga 310
              ||||| |||||||||||||||| ||||| ||||
Sbjct: 396261 cgcctgcgagttcgagttcgagttcgagttcga 396293
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>ref|XM_753087.1| Ustilago maydis 521 hypothetical protein (UM02033.1) partial mRNA
          Length = 2661

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 283  tcgagttcgagttcgagctcgagctcgag 311
            ||||||||||||||||| ||||| |||||
Sbjct: 2328 tcgagttcgagttcgagttcgagatcgag 2356
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>emb|X96670.1|HSRING3GE H.sapiens RING3 gene
          Length = 14561

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 238 ggctgctccactccagcacga 258
           |||||||||||||||||||||
Sbjct: 573 ggctgctccactccagcacga 553
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>ref|XM_538345.2| PREDICTED: Canis familiaris similar to transcription factor 20
            isoform 2, transcript variant 1 (LOC481224), mRNA
          Length = 5880

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 498  cttccgatacctctacccgtgtgcc 522
            ||||||||||| |||||||||||||
Sbjct: 5712 cttccgataccactacccgtgtgcc 5736
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>ref|XM_852361.1| PREDICTED: Canis familiaris similar to transcription factor 20
            isoform 2, transcript variant 2 (LOC481224), mRNA
          Length = 6027

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 498  cttccgatacctctacccgtgtgcc 522
            ||||||||||| |||||||||||||
Sbjct: 5712 cttccgataccactacccgtgtgcc 5736
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>emb|X62083.1|HSFSHMR H.sapiens mRNA for Drosophila female sterile homeotic (FSH)
           homologue
          Length = 4053

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 238 ggctgctccactccagcacga 258
           |||||||||||||||||||||
Sbjct: 362 ggctgctccactccagcacga 342
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>emb|Z96104.1|HSO27 Human DNA sequence from clone XX-O27 on chromosome 6 Contains the BRD2
             gene encoding bromodomain-containing 2 protein, the
             HLA-DMA gene encoding major histocompatibility complex
             class II DM alpha, two CpG islands, ESTs, STSs and GSSs,
             complete sequence
          Length = 38902

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 238   ggctgctccactccagcacga 258
             |||||||||||||||||||||
Sbjct: 13981 ggctgctccactccagcacga 14001
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>emb|Z84497.1|HSO14 Human DNA sequence from clone XX-O14 on chromosome 6 Contains the BRD2
             gene for bromodomain-containing protein 2 (RING3,
             KIAA9001), ESTs, STSs, GSSs and two CpG islands, complete
             sequence
          Length = 40740

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 238   ggctgctccactccagcacga 258
             |||||||||||||||||||||
Sbjct: 30824 ggctgctccactccagcacga 30844
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>emb|AL935042.6| Human DNA sequence from clone DAQB-96B10 on chromosome 6 Contains the
             HLA-Z pseudogene for major histocompatibility complex,
             class I, Z, the HLA-DMB gene for major histocompatibility
             complex, class II, DM beta, the HLA-DMA gene for major
             histocompatibility complex, class II, DM alpha, the 5' end
             of the BRD2 gene for bromodomain containing 2 and 3 CpG
             islands, complete sequence
          Length = 95788

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   ggctgctccactccagcacga 258
             |||||||||||||||||||||
Sbjct: 90960 ggctgctccactccagcacga 90940
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>emb|BX005422.5| Human DNA sequence from clone DASS-32K24 on chromosome 6, complete
           sequence
          Length = 97466

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 238 ggctgctccactccagcacga 258
           |||||||||||||||||||||
Sbjct: 209 ggctgctccactccagcacga 189
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>emb|AL645941.11| Human DNA sequence from clone XXbac-181M17 on chromosome 6 contains the
             HLA-DMB gene for major histocompatibility complex, class
             II, DM beta, the HLA-DMA gene for major histocompatibility
             complex, class II, DM alpha, the BRD2 gene for bromodomain
             containing 2 and two CpG islands, complete sequence
          Length = 71501

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   ggctgctccactccagcacga 258
             |||||||||||||||||||||
Sbjct: 49661 ggctgctccactccagcacga 49641
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>emb|AL662845.5| Human DNA sequence from clone XXbac-136A3 on chromosome 6 contains the
             HLA-DMB gene for major histocompatibility complex, class
             II, DM beta, the HLA-DMA gene for major histocompatibility
             complex, class II, DM alpha, the BRD2 gene for bromodomain
             containing 2, the HLA-DOA gene for major
             histocompatibility complex, class II, DO alpha and two CpG
             islands, complete sequence
          Length = 97128

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   ggctgctccactccagcacga 258
             |||||||||||||||||||||
Sbjct: 49675 ggctgctccactccagcacga 49655
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>gb|AC087828.6| Homo sapiens chromosome 15, clone RP11-292P13, complete sequence
          Length = 185324

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 531    acatcttccaaagctttacag 551
              |||||||||||||||||||||
Sbjct: 138999 acatcttccaaagctttacag 139019
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>emb|Z50018.1|KMDNAMIG1 K.marxianus DNA for MIG1 gene encoding Zinc finger protein
          Length = 2103

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 283 tcgagttcgagttcgagctcgagct 307
           |||||||||||||||||| ||||||
Sbjct: 891 tcgagttcgagttcgagcccgagct 867
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>ref|XM_778208.1| PREDICTED: Strongylocentrotus purpuratus similar to cGMP-dependent
           protein kinase 1, beta isozyme (CGK 1 beta) (cGKI-beta)
           (LOC578018), mRNA
          Length = 1113

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 289 tcgagttcgagctcgagctcg 309
           |||||||||||||||||||||
Sbjct: 761 tcgagttcgagctcgagctcg 741
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>emb|AL832722.1|HSM804033 Homo sapiens mRNA; cDNA DKFZp313H139 (from clone DKFZp313H139)
          Length = 4667

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 238 ggctgctccactccagcacga 258
           |||||||||||||||||||||
Sbjct: 875 ggctgctccactccagcacga 855
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>emb|CR759798.3| Human DNA sequence from clone DAMC-226H3 on chromosome 6, complete
              sequence
          Length = 118408

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 238    ggctgctccactccagcacga 258
              |||||||||||||||||||||
Sbjct: 110921 ggctgctccactccagcacga 110901
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>emb|BX648109.1|HSM808256 Homo sapiens mRNA; cDNA DKFZp686E1432 (from clone DKFZp686E1432)
          Length = 4625

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 238 ggctgctccactccagcacga 258
           |||||||||||||||||||||
Sbjct: 942 ggctgctccactccagcacga 922
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>gb|AC122108.2| Homo sapiens chromosome 15 clone CTD-2008A1 map 15q21.1, complete
              sequence
          Length = 141944

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 531    acatcttccaaagctttacag 551
              |||||||||||||||||||||
Sbjct: 121730 acatcttccaaagctttacag 121750
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>gb|AC120778.2| Homo sapiens chromosome 15 clone CTD-2163N2 map 15q21.1, complete
             sequence
          Length = 113282

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 531   acatcttccaaagctttacag 551
             |||||||||||||||||||||
Sbjct: 29061 acatcttccaaagctttacag 29081
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>dbj|AK056504.1| Homo sapiens cDNA FLJ31942 fis, clone NT2RP7006717, highly similar
           to Mus musculus Ring3 mRNA
          Length = 3404

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 238 ggctgctccactccagcacga 258
           |||||||||||||||||||||
Sbjct: 898 ggctgctccactccagcacga 878
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>gb|AC093154.2| Homo sapiens chromosome 1 clone RP3-445O10, complete sequence
          Length = 145658

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 527   taacacatcttccaaagcttt 547
             |||||||||||||||||||||
Sbjct: 90849 taacacatcttccaaagcttt 90829
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>gb|AC091117.5| Homo sapiens chromosome 15 clone RP11-109D20 map 15q15, complete sequence
          Length = 181312

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 531    acatcttccaaagctttacag 551
              |||||||||||||||||||||
Sbjct: 122723 acatcttccaaagctttacag 122703
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>gb|AC091245.2| Homo sapiens chromosome 15 clone RP11-456H13 map 15q15, complete
             sequence
          Length = 194311

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 531   acatcttccaaagctttacag 551
             |||||||||||||||||||||
Sbjct: 93836 acatcttccaaagctttacag 93856
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>emb|BX908719.9| Human DNA sequence from clone DAMA-147C13 on chromosome 6, complete
             sequence
          Length = 36230

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   ggctgctccactccagcacga 258
             |||||||||||||||||||||
Sbjct: 30609 ggctgctccactccagcacga 30589
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>gb|AC018901.8| Homo sapiens chromosome 15 clone RP11-292P13 map 15q15, complete sequence
          Length = 199503

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 531    acatcttccaaagctttacag 551
              |||||||||||||||||||||
Sbjct: 153151 acatcttccaaagctttacag 153171
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>gb|AC091043.12| Homo sapiens chromosome 18, clone RP11-595B24, complete sequence
          Length = 208310

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 655    agtctaggagtttgcaaccag 675
              |||||||||||||||||||||
Sbjct: 109036 agtctaggagtttgcaaccag 109016
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>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0458E05
          Length = 193577

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 287    gttcgagttcgagctcgagctcgag 311
              ||||||| |||||||||||||||||
Sbjct: 102264 gttcgagctcgagctcgagctcgag 102240
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>emb|BX813329.2| Human DNA sequence from clone DASS-101M19 on chromosome 6, complete
             sequence
          Length = 12636

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   ggctgctccactccagcacga 258
             |||||||||||||||||||||
Sbjct: 10845 ggctgctccactccagcacga 10825
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>gb|U67252.1|HSPSORD7 Homo sapiens sorbitol dehydrogenase (SORD) pseudogene, exons 8 and
           9
          Length = 3394

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 531 acatcttccaaagctttacag 551
           |||||||||||||||||||||
Sbjct: 305 acatcttccaaagctttacag 285
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>dbj|D42040.1|HUMKIA9001 Homo sapiens KIAA9001 mRNA, complete cds
          Length = 4664

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 238  ggctgctccactccagcacga 258
            |||||||||||||||||||||
Sbjct: 1027 ggctgctccactccagcacga 1007
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>gb|M80613.1|HUMFSHG Human homolog of Drosophila female sterile homeotic mRNA, complete
           cds
          Length = 4053

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 238 ggctgctccactccagcacga 258
           |||||||||||||||||||||
Sbjct: 362 ggctgctccactccagcacga 342


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,035,573
Number of Sequences: 3902068
Number of extensions: 6035573
Number of successful extensions: 130230
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129876
Number of HSP's gapped (non-prelim): 343
length of query: 737
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 714
effective length of database: 17,143,297,704
effective search space: 12240314560656
effective search space used: 12240314560656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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