ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22g17 |
|---|---|
| Clone Library Name | barley_pub |
>CCNL1_BRARE (Q7ZVX0) Cyclin-L1| Length = 498 Score = 34.7 bits (78), Expect = 0.17 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Frame = -1 Query: 419 RGRESRDRSQSRP-ARSRDH--GRNDRGSSDYHEDHHDRKRMRA 297 R SR RS SR R RDH + +R S +H DH DR+R R+ Sbjct: 432 RRSRSRSRSNSRERVRDRDHIKHKQERSGSGHHWDHRDRERDRS 475 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = -1 Query: 428 GSPRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKR 306 GS + RDR + R SRDHGRN R S + H R R Sbjct: 460 GSGHHWDHRDRERDR---SRDHGRNKRQSRSHSGHSHSRHR 497
>YP68_CAEEL (Q09217) Hypothetical protein B0495.8| Length = 313 Score = 34.3 bits (77), Expect = 0.22 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = -1 Query: 419 RGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRK 309 R R +RDRS+SR R + R+DRG Y D+ DR+ Sbjct: 274 RDRRNRDRSRSR---DRSYRRDDRGDRRYDRDNRDRR 307
>PPIG_RAT (O55035) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.1.8)| (Peptidyl-prolyl isomerase G) (PPIase G) (Rotamase G) (Cyclophilin G) (Matrin cyclophilin) (Matrin-cyp) Length = 752 Score = 32.7 bits (73), Expect = 0.63 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -1 Query: 419 RGRE-SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 291 R RE SR R +SR RSR H R+ S +YH R R S Sbjct: 560 RTRERSRSRDRSRRVRSRSHDRDRSRSKEYHRYREQEYRRRGRS 603
>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase mog-5 (EC 3.6.1.-) (Sex determination protein mog-5) (Masculinization of germ line protein 5) Length = 1200 Score = 32.3 bits (72), Expect = 0.82 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = -1 Query: 419 RGRESR-DRSQSRPARSRDHGRNDRGSSDYHEDHHDRK 309 R RE R DR + R RD GR DR D D DR+ Sbjct: 183 RSREDRRDRDRRDRDRDRDRGRGDRRGDDRQRDRRDRR 220
>PPIG_HUMAN (Q13427) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.1.8)| (Peptidyl-prolyl isomerase G) (PPIase G) (Rotamase G) (Cyclophilin G) (Clk-associating RS-cyclophilin) (CARS-cyclophilin) (CARS-Cyp) (SR-cyclophilin) (SRcyp) (SR-cyp) (CASP10) Length = 754 Score = 32.3 bits (72), Expect = 0.82 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -1 Query: 419 RGRE-SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 291 R RE SR R +SR RSR H R+ S +YH R R S Sbjct: 561 RTRERSRSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRS 604
>CCNL2_HUMAN (Q96S94) Cyclin-L2 (Paneth cell-enhanced expression protein)| Length = 520 Score = 32.3 bits (72), Expect = 0.82 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 9/55 (16%) Frame = -1 Query: 428 GSPRGRESRDRSQSR-------PARSRDHGR--NDRGSSDYHEDHHDRKRMRASS 291 G P+GRESR RS+SR P+RS R +D GS+ R R R+ S Sbjct: 373 GLPKGRESRSRSRSREQSYSRSPSRSASPKRRKSDSGSTSGGSKSQSRSRSRSDS 427
>CS029_MOUSE (Q9CS00) Protein C19orf29 homolog| Length = 772 Score = 32.0 bits (71), Expect = 1.1 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = -1 Query: 428 GSPRGRE-SRDRSQSRP-ARSRDHGRNDRGSSDYHEDHHDRKR 306 G R R SR RS+SR +RSR HGR+ R + HE +RKR Sbjct: 32 GRSRSRSRSRSRSRSRSRSRSRSHGRSSRRRRE-HERRRERKR 73
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -1 Query: 419 RGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRA 297 R R+ DR + + +RSRD G DR S D DR R R+ Sbjct: 48 RDRDDEDRKKRKRSRSRDRGDRDRKRS-RSRDRRDRDRSRS 87
>EGGS_SCHMA (P08016) Putative eggshell protein (Fragment)| Length = 149 Score = 31.6 bits (70), Expect = 1.4 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -1 Query: 371 RDHGRNDRGSSDYHEDHHDRK 309 +DH ++D D+H+DHHD + Sbjct: 107 KDHDKHDHDEHDHHDDHHDHR 127
>TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)| (SUMO1-protein E3 ligase Topors) (Topoisomerase I-binding RING finger protein) (Topoisomerase I-binding arginine/serine-rich protein) (Tumor suppressor p53-binding protein 3) (p53-bindi Length = 1045 Score = 31.2 bits (69), Expect = 1.8 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -1 Query: 425 SPRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRA 297 SP R R +SR + SR R+ + H HH +KRM++ Sbjct: 585 SPYNHRHRKRGRSRSSDSRSQSRSGHDQKN-HRKHHGKKRMKS 626
>CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (PPIase| 1) (Cyclophilin) (BmCYP-1) Length = 843 Score = 30.8 bits (68), Expect = 2.4 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -1 Query: 422 PRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 291 P+ + +RS+SR RSR +GR R SS R + R+ S Sbjct: 692 PKEHKRNERSRSRRRRSRSNGRRRRSSSRRSRSRDRRHKSRSRS 735
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 30.8 bits (68), Expect = 2.4 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = -1 Query: 425 SPRGRESRDRSQSR-PARSRDHGRNDRGSSDYHEDHHDRKR 306 SP S D QSR P RSRD R+ R S H R R Sbjct: 130 SPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHR 170
>HXA2_HUMAN (O43364) Homeobox protein Hox-A2| Length = 376 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 49 CKRNCPPLSETYIITG-KTSLISNAATSPPSLFRTLYPSMATGDHRPH 189 C + PP+++T+ + KTS +S++ PP +T+ PS+ G H H Sbjct: 21 CLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTI-PSLNPGSHPRH 67
>YOD2_CAEEL (P34594) Hypothetical protein ZC262.2| Length = 233 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Frame = -1 Query: 422 PRGRESRDRSQSRPARSRDHGRND-----RGSSDYHEDHHDRKRMR 300 P ESR R RD+GRND RG + D +DR R Sbjct: 56 PEKNESRRHDDRDQERRRDYGRNDRRDDRRGDGSWKTDRNDRNDRR 101
>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -1 Query: 413 RESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASSTVDG 279 R SR R + R +RSR GR R SS ++ R R+ DG Sbjct: 83 RRSRSRDRRR-SRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDG 126
>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (PRP5 homolog) Length = 1032 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -1 Query: 413 RESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASSTVDG 279 R SR R + R +RSR GR R SS ++ R R+ DG Sbjct: 83 RRSRSRDRRR-SRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDG 126
>HXA2_MOUSE (P31245) Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11)| Length = 372 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 49 CKRNCPPLSETYIITG-KTSLISNAATSPPSLFRTLYPSMATGDHRPH 189 C + PP+++T+ + KTS +S++ PP +T+ PS+ G H H Sbjct: 21 CLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTI-PSLNPGSHPRH 67
>SFRS6_RABIT (O18776) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) (Fragment) Length = 81 Score = 30.0 bits (66), Expect = 4.1 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -1 Query: 419 RGRESRDRSQSRPARSR-DHGRNDRGSSDYHEDHHDRKRMRASS 291 +GR+SR +S+S+P R R+ S D +E R R R+ S Sbjct: 37 KGRKSRSKSKSKPKSDRGSRSRSRSRSKDEYEKSRSRSRSRSRS 80
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -1 Query: 419 RGRESRDRSQSRPARSR-DHGRNDRGSSDYHEDHHDRKRMRA 297 +GR+SR +S+S+P R H + S D +E R R R+ Sbjct: 239 KGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRS 280
>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15) (ATP-dependent RNA helicase #46) Length = 795 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -1 Query: 410 ESRDRSQSRPARSRDHGR-NDRGSSDYHEDHHDRKRMRASS 291 + RDR + R RS+D R DRG + + K +RAS+ Sbjct: 25 KDRDRDRDREDRSKDRDRERDRGDREREREKEKEKELRAST 65
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -1 Query: 428 GSPRGRESR-DRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMR 300 G R R+SR DR ++R RD DRG D HDR R R Sbjct: 307 GRDRDRDSRRDRDRTRDRGDRDRRDRDRGRDRTSRD-HDRDRSR 349
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 29.6 bits (65), Expect = 5.3 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1 Query: 425 SPRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKR 306 SPR R+R +S P R RD R+D D + DR+R Sbjct: 437 SPRRDRDRERDRS-PRRDRDRERDDHDRRDRDRNGRDRER 475
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 29.3 bits (64), Expect = 7.0 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 6/77 (7%) Frame = +2 Query: 308 SSC--RGDPRGSHWNLCRYAHGPYSSPALT----GTCPSTLCHEENPSAGCALMA*I*TE 469 +SC R +PR S N P +S A + P+ +ENP CAL Sbjct: 626 TSCAQRDNPRASSPNRTTQQDSPRTSCARRDDPRASSPNRTIQQENPRTSCALRD-NPRA 684 Query: 470 TSPWTLCHEENPSAGCA 520 +SP +ENP CA Sbjct: 685 SSPSRTIQQENPRTSCA 701
>EDD1_MOUSE (Q80TP3) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) Length = 2792 Score = 29.3 bits (64), Expect = 7.0 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 11/48 (22%) Frame = -1 Query: 419 RGRESRDRSQSRPARSRDHGRNDRGSSDY-----------HEDHHDRK 309 R + R SQS+P R RD ++D S+D EDHHD + Sbjct: 1535 RNPQQRRISQSQPVRGRDEEQDDIVSADVEEVEVVEGVAGEEDHHDEQ 1582
>EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) (hHYD) (Progestin-induced protein) Length = 2799 Score = 29.3 bits (64), Expect = 7.0 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 11/48 (22%) Frame = -1 Query: 419 RGRESRDRSQSRPARSRDHGRNDRGSSDY-----------HEDHHDRK 309 R + R SQS+P R RD ++D S+D EDHHD + Sbjct: 1541 RNPQQRRISQSQPVRGRDEEQDDIVSADVEEVEVVEGVAGEEDHHDEQ 1588
>CCNL1_CHICK (Q5ZJP9) Cyclin-L1| Length = 534 Score = 29.3 bits (64), Expect = 7.0 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%) Frame = -1 Query: 428 GSPRGRESRDRSQSR-------PARSRD--HGRNDRGSSDYHEDHHDRKRMRASS 291 G +GRESR RS SR P+RS H +++ S+ H R R R+ S Sbjct: 386 GVQKGRESRSRSGSRDQSYSRSPSRSASPKHRKSESYSTSSGSKSHSRSRSRSGS 440
>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25| Length = 561 Score = 29.3 bits (64), Expect = 7.0 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -1 Query: 407 SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMR 300 SR+R + RP R R+ R+ R D + R+R R Sbjct: 175 SRERERRRPRRKREDSRDRRNRRDMEREGERRRRRR 210
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 28.9 bits (63), Expect = 9.1 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Frame = -1 Query: 419 RGRESRDRSQSRPARSRDH----GRNDRGSSDY 333 RG SRDR + R RDH R++RG DY Sbjct: 459 RGDRSRDRYRDRDYNDRDHRRGRDRDNRGRDDY 491
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)| Length = 452 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -1 Query: 419 RGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRA 297 R R+SRDR + R R R R+ R S + DRKR R+ Sbjct: 288 RRRDSRDRDRDRD-RDRRRSRDRRSRSRDRDRDRDRKRSRS 327
>HXA2_RAT (P31246) Homeobox protein Hox-A2 (Hox-1.11)| Length = 372 Score = 28.9 bits (63), Expect = 9.1 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = +1 Query: 49 CKRNCPPLSETYIITG-KTSLISNAATSPPSLFRTLYPSMATGDH 180 C + PP+++T+ + KTS +S++ PP +T+ PS+ G H Sbjct: 21 CLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTI-PSLNPGSH 64 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.135 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,261,905 Number of Sequences: 219361 Number of extensions: 1156360 Number of successful extensions: 3437 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3229 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3430 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
