>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = -1

Query: 464  PFYCHPPPMQILPRENFAGSMPAFPMVGAQRQQV------RYSQSLHLTPSRVQPPQ 312
            P   HPPP+Q++P+     S PA P    Q Q +        +  LH  PS+   PQ
Sbjct: 972  PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSPFPQ 1028

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = -1

Query: 464  PFYCHPPPMQILPRENFAGSMPAFPMVGAQRQQV-------RYSQSLHLTPSRVQPPQ 312
            P   HPPP+Q++P+     S PA P    Q Q +         +  LH  PS+   PQ
Sbjct: 971  PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGGLHQVPSQSPFPQ 1028

>DPOG1_XENLA (Q91684) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial|
            DNA polymerase catalytic subunit)
          Length = 1200

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = -2

Query: 481  AILGSGHFTAIHRRCKFCQGRILLDPCLLSPWLVLKGSKS---DIANPYISPRLVSSLHK 311
            AILG  HF  IH              C    W+ L+G KS   D+ +   S   +S  H 
Sbjct: 870  AILGEAHFAGIH-------------GCTAFGWMTLQGKKSSGTDLHSKTASTVGISREH- 915

Query: 310  VT*TRMFTIRRIYG 269
                ++F   RIYG
Sbjct: 916  ---AKVFNYGRIYG 926

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -1

Query: 464  PFYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYSQSLHLTPSRVQPPQG 309
            P   HPPP+Q++P+     S PA P    Q Q +         P    PP G
Sbjct: 980  PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLP-------PPPASHPPTG 1024


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,903,058
Number of Sequences: 219361
Number of extensions: 1603132
Number of successful extensions: 3334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3334
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)