ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192031.1| Oryza sativa (japonica cultivar-group), predic... 365 1e-97
2dbj|AK120629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
3dbj|AK063019.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
4gb|AY106215.1| Zea mays PCO086004 mRNA sequence 280 5e-72
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 248 2e-62
6dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic D... 248 2e-62
7dbj|AK062194.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 1e-45
8dbj|AK071536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
9gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, comple... 50 0.009
10gb|AY770501.1| Sesamum indicum microsomal oleic acid desaturase ... 44 0.56
11gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, comp... 42 2.2
12gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome... 42 2.2
13emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 o... 42 2.2
14gb|DQ366743.1| Uncultured Prochlorococcus marinus clone HOT0M-8F... 42 2.2
15emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ... 42 2.2
16gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell ... 42 2.2
17gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell... 42 2.2
18dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 2.2
19gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, comple... 42 2.2
20gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74... 42 2.2
21gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, co... 40 8.7
22gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, comp... 40 8.7
23gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, comp... 40 8.7
24gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosom... 40 8.7
25emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chr... 40 8.7
26emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chr... 40 8.7
27gb|AC161447.6| Mus musculus BAC clone RP24-333C14 from chromosom... 40 8.7
28gb|AC091862.3| Homo sapiens chromosome 5 clone CTD-2349K24, comp... 40 8.7
29gb|AC016561.7| Homo sapiens chromosome 5 clone CTC-466C4, comple... 40 8.7
30gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, comp... 40 8.7
31gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C... 40 8.7
32gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complet... 40 8.7
33gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chrom... 40 8.7
34gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosom... 40 8.7
35gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complet... 40 8.7
36gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, comple... 40 8.7
37gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, compl... 40 8.7
38gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Can... 40 8.7 
>ref|NM_192031.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 591

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Minus

                                                                       
Query: 270 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 329
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 581 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 522

                                                                       
Query: 330 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 389
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 521 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 462

                                                                       
Query: 390 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 449
           |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 461 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 402

                                                                       
Query: 450 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 509
           |||  |||||| |||||||| |  ||||||||||||||| | |||||||||||||||| |
Sbjct: 401 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 342

                                                                       
Query: 510 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 569
           |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 341 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 282

                               
Query: 570 ctcttcttcaccgagtccgg 589
           |||||||| |||||||||||
Sbjct: 281 ctcttcttgaccgagtccgg 262
to top
>dbj|AK120629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153D21, full
           insert sequence
          Length = 915

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Minus

                                                                       
Query: 270 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 329
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 616 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 557

                                                                       
Query: 330 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 389
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 556 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 497

                                                                       
Query: 390 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 449
           |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 496 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 437

                                                                       
Query: 450 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 509
           |||  |||||| |||||||| |  ||||||||||||||| | |||||||||||||||| |
Sbjct: 436 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 377

                                                                       
Query: 510 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 569
           |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 376 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 317

                               
Query: 570 ctcttcttcaccgagtccgg 589
           |||||||| |||||||||||
Sbjct: 316 ctcttcttgaccgagtccgg 297



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 183 aacatatgc-tgtccaaaattggcaaga 209
           ||||||||| ||||||||||||||||||
Sbjct: 705 aacatatgcatgtccaaaattggcaaga 678
to top
>dbj|AK063019.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B01, full
           insert sequence
          Length = 727

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Minus

                                                                       
Query: 270 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 329
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 613 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 554

                                                                       
Query: 330 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 389
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 553 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 494

                                                                       
Query: 390 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 449
           |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 493 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 434

                                                                       
Query: 450 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 509
           |||  |||||| |||||||| |  ||||||||||||||| | |||||||||||||||| |
Sbjct: 433 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 374

                                                                       
Query: 510 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 569
           |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 373 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 314

                               
Query: 570 ctcttcttcaccgagtccgg 589
           |||||||| |||||||||||
Sbjct: 313 ctcttcttgaccgagtccgg 294



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 183 aacatatgc-tgtccaaaattggcaaga 209
           ||||||||| ||||||||||||||||||
Sbjct: 702 aacatatgcatgtccaaaattggcaaga 675
to top
>gb|AY106215.1| Zea mays PCO086004 mRNA sequence
          Length = 859

 Score =  280 bits (141), Expect = 5e-72
 Identities = 273/317 (86%)
 Strand = Plus / Minus

                                                                       
Query: 274 caggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctccttg 333
           |||||||||| || || |||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 684 caggttcagcgtttgggacataccaaccacggagtatctcgatggccttcttcctccttg 625

                                                                       
Query: 334 caagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcactgtct 393
           | || |  ||||| ||||| |   | || ||||| |||||||||||||||||||| ||||
Sbjct: 624 ccagtcgagacttccgatggttcgccgtgttcctatgcatggcgccaaccttcaccgtct 565

                                                                       
Query: 394 tgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttcaggtt 453
           |||||||||||||||||||||||| |||||  |||||||| ||||| ||||||||||| |
Sbjct: 564 tgtcgatggctttgtatgcctcagcgatcagcttctctatctcaattatttcttcaggct 505

                                                                       
Query: 454 gggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgggtgc 513
           | || || | |||||||| |||||||||||| ||||| || ||||| |||||||  ||||
Sbjct: 504 gcgcgtcaggtttcttcctaagcttttcaagagctcttaagacctttttcatcctagtgc 445

                                                                       
Query: 514 gcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctccctct 573
           |||||||||||||||| || || ||||| ||||||||  |||| ||||||||||||||||
Sbjct: 444 gcatctcggccttgcgcgcgtgattgcggatgcggtgcttgtcgttctggcgctccctct 385

                            
Query: 574 tcttcaccgagtccggc 590
           |||| ||||||||||||
Sbjct: 384 tcttaaccgagtccggc 368
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  248 bits (125), Expect = 2e-62
 Identities = 203/229 (88%)
 Strand = Plus / Minus

                                                                            
Query: 270      gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 329
                |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 27917295 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 27917236

                                                                            
Query: 330      cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 389
                || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 27917235 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 27917176

                                                                            
Query: 390      gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 449
                |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 27917175 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 27917116

                                                                 
Query: 450      ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaacct 498
                |||  |||||| |||||||| |  ||||||||||||||| | |||||||
Sbjct: 27917115 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaacct 27917067



 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                            
Query: 495      accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 554
                ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 27916044 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 27915985

                                                   
Query: 555      tcattctggcgctccctcttcttcaccgagtccgg 589
                || ||||| |||||||||||||| |||||||||||
Sbjct: 27915984 tcgttctgccgctccctcttcttgaccgagtccgg 27915950



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                            
Query: 183      aacatatgc-tgtccaaaattggcaaga 209
                ||||||||| ||||||||||||||||||
Sbjct: 27917384 aacatatgcatgtccaaaattggcaaga 27917357
to top
>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1144G04
          Length = 194459

 Score =  248 bits (125), Expect = 2e-62
 Identities = 203/229 (88%)
 Strand = Plus / Minus

                                                                          
Query: 270    gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 329
              |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 103976 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 103917

                                                                          
Query: 330    cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 389
              || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 103916 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 103857

                                                                          
Query: 390    gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 449
              |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 103856 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 103797

                                                               
Query: 450    ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaacct 498
              |||  |||||| |||||||| |  ||||||||||||||| | |||||||
Sbjct: 103796 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaacct 103748



 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                          
Query: 495    accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 554
              ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 102725 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 102666

                                                 
Query: 555    tcattctggcgctccctcttcttcaccgagtccgg 589
              || ||||| |||||||||||||| |||||||||||
Sbjct: 102665 tcgttctgccgctccctcttcttgaccgagtccgg 102631



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 183    aacatatgc-tgtccaaaattggcaaga 209
              ||||||||| ||||||||||||||||||
Sbjct: 104065 aacatatgcatgtccaaaattggcaaga 104038
to top
>dbj|AK062194.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-F06, full
           insert sequence
          Length = 455

 Score =  192 bits (97), Expect = 1e-45
 Identities = 136/149 (91%)
 Strand = Plus / Minus

                                                                       
Query: 270 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 329
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 161 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 102

                                                                       
Query: 330 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 389
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 101 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 42

                                        
Query: 390 gtcttgtcgatggctttgtatgcctcaga 418
           |||||||| ||||||||||||||||||||
Sbjct: 41  gtcttgtcaatggctttgtatgcctcaga 13



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 183 aacatatgc-tgtccaaaattggcaaga 209
           ||||||||| ||||||||||||||||||
Sbjct: 250 aacatatgcatgtccaaaattggcaaga 223
to top
>dbj|AK071536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N15, full
           insert sequence
          Length = 651

 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                       
Query: 495 accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 554
           ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 257 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 198

                                              
Query: 555 tcattctggcgctccctcttcttcaccgagtccgg 589
           || ||||| |||||||||||||| |||||||||||
Sbjct: 197 tcgttctgccgctccctcttcttgaccgagtccgg 163
to top
>gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, complete sequence
          Length = 167776

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 308    tatctcaatggccttcttcctcctt 332
              |||||||||||||||||||||||||
Sbjct: 166108 tatctcaatggccttcttcctcctt 166084
to top
>gb|AY770501.1| Sesamum indicum microsomal oleic acid desaturase gene, complete cds
          Length = 3762

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 25   tatttcggtttgaagttttaca 46
            ||||||||||||||||||||||
Sbjct: 1440 tatttcggtttgaagttttaca 1461
to top
>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence
          Length = 159182

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 415   cagagatcattttctctattt 435
             |||||||||||||||||||||
Sbjct: 55397 cagagatcattttctctattt 55417
to top
>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence
          Length = 176667

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 415    cagagatcattttctctattt 435
              |||||||||||||||||||||
Sbjct: 175097 cagagatcattttctctattt 175077
to top
>emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 on chromosome Xp22.11-22.2
             Contains the 3' end of a novel gene, complete sequence
          Length = 58498

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 311   ctcaatggccttcttcctcct 331
             |||||||||||||||||||||
Sbjct: 13755 ctcaatggccttcttcctcct 13775
to top
>gb|DQ366743.1| Uncultured Prochlorococcus marinus clone HOT0M-8F9 genomic sequence
          Length = 27928

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 429   tctatttcaatgatttcttca 449
             |||||||||||||||||||||
Sbjct: 18648 tctatttcaatgatttcttca 18668
to top
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 605    gggcggctcggcggcgcacaccacc 629
              ||||||||||||||||| |||||||
Sbjct: 204693 gggcggctcggcggcgcgcaccacc 204669
to top
>gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 184424

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 540  cgaatgcggtgtctgtcattc 560
            |||||||||||||||||||||
Sbjct: 7400 cgaatgcggtgtctgtcattc 7380
to top
>gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163098

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 540    cgaatgcggtgtctgtcattc 560
              |||||||||||||||||||||
Sbjct: 144096 cgaatgcggtgtctgtcattc 144076
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 605     gggcggctcggcggcgcacaccacc 629
               ||||||||||||||||| |||||||
Sbjct: 3910496 gggcggctcggcggcgcgcaccacc 3910520
to top
>gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, complete sequence
          Length = 196037

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 424    ttttctctatttcaatgatttcttc 448
              |||||||||| ||||||||||||||
Sbjct: 166833 ttttctctatgtcaatgatttcttc 166857
to top
>gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74 of 83 of the complete
              sequence
          Length = 313157

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 540    cgaatgcggtgtctgtcattc 560
              |||||||||||||||||||||
Sbjct: 141281 cgaatgcggtgtctgtcattc 141301
to top
>gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, complete sequence
          Length = 188921

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 429   tctatttcaatgatttcttcaggt 452
             |||||||||||| |||||||||||
Sbjct: 54497 tctatttcaatgttttcttcaggt 54474
to top
>gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, complete sequence
          Length = 138419

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   aagaaaagctgctgcaattt 237
             ||||||||||||||||||||
Sbjct: 15020 aagaaaagctgctgcaattt 15039
to top
>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence
          Length = 422021

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    cagctgcagcaggttcagca 284
              ||||||||||||||||||||
Sbjct: 325163 cagctgcagcaggttcagca 325144
to top
>gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosome 10, complete sequence
          Length = 198030

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 429    tctatttcaatgatttcttcaggt 452
              |||||||||||| |||||||||||
Sbjct: 167318 tctatttcaatgttttcttcaggt 167295
to top
>emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chromosome 13 Contains the
             KATNAL1 gene for katanin p60 subunit A-like 1, a
             peroxiredoxin 2 (PRDX2) pseudogene, two novel genes and
             two CpG islands, complete sequence
          Length = 182303

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   tctatttcaatgatttcttc 448
             ||||||||||||||||||||
Sbjct: 26193 tctatttcaatgatttcttc 26174
to top
>emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the 5'
              end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box
              polypeptide (RIG-I), the gene for tumor protein p53-binding
              protein (TP53BPL), a novel gene, a DNA fragmentation
              factor, 40kDa, beta polypeptide (caspase-activated DNase)
              (DFFB) (CAD, CPAN, DFF40) pseudogene, a novel gene
              (FLJ25547), the  NDUFB6 gene for NADH dehydrogenase
              (ubiquinone) 1 beta subcomplex, 6, 17kDa (B17), and a CpG
              island, complete sequence
          Length = 155585

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    aatggccttcttcctccttg 333
              ||||||||||||||||||||
Sbjct: 134604 aatggccttcttcctccttg 134623
to top
>gb|AC161447.6| Mus musculus BAC clone RP24-333C14 from chromosome 17, complete sequence
          Length = 182569

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     tgaagttttacaacagagga 54
              ||||||||||||||||||||
Sbjct: 160679 tgaagttttacaacagagga 160698
to top
>gb|AC091862.3| Homo sapiens chromosome 5 clone CTD-2349K24, complete sequence
          Length = 119395

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    aagttttacaacagaggaatgtaa 60
             |||||||| |||||||||||||||
Sbjct: 80377 aagttttataacagaggaatgtaa 80400
to top
>gb|AC016561.7| Homo sapiens chromosome 5 clone CTC-466C4, complete sequence
          Length = 95105

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 37    aagttttacaacagaggaatgtaa 60
             |||||||| |||||||||||||||
Sbjct: 82039 aagttttataacagaggaatgtaa 82016
to top
>gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, complete sequence
          Length = 156107

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   tgcctcagagatcattttct 429
             ||||||||||||||||||||
Sbjct: 21767 tgcctcagagatcattttct 21748
to top
>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177115

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    cctcagagatcattttctct 431
              ||||||||||||||||||||
Sbjct: 170690 cctcagagatcattttctct 170671
to top
>gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complete sequence
          Length = 180918

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   tgtgatgaaagaaaagctgc 229
             ||||||||||||||||||||
Sbjct: 91681 tgtgatgaaagaaaagctgc 91700
to top
>gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chromosome unknown, complete
              sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 429    tctatttcaatgatttcttc 448
              ||||||||||||||||||||
Sbjct: 112522 tctatttcaatgatttcttc 112541
to top
>gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosome 9, complete sequence
          Length = 210202

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   tgacaactcccccagaaact 261
             ||||||||||||||||||||
Sbjct: 49771 tgacaactcccccagaaact 49752
to top
>gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complete sequence
          Length = 192562

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   aagaaaagctgctgcaattt 237
             ||||||||||||||||||||
Sbjct: 27064 aagaaaagctgctgcaattt 27045
to top
>gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, complete sequence
          Length = 166555

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    gatgaaagaaaagctgctgc 232
              ||||||||||||||||||||
Sbjct: 166494 gatgaaagaaaagctgctgc 166475
to top
>gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, complete sequence
          Length = 207234

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    gatgaaagaaaagctgctgc 232
              ||||||||||||||||||||
Sbjct: 201475 gatgaaagaaaagctgctgc 201494
to top
>gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 181465

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    tctctatttcaatgatttct 446
              ||||||||||||||||||||
Sbjct: 106142 tctctatttcaatgatttct 106123


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,101,356
Number of Sequences: 3902068
Number of extensions: 6101356
Number of successful extensions: 130112
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129945
Number of HSP's gapped (non-prelim): 167
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top