ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22f16 |
|---|---|
| Clone Library Name | barley_pub |
>RSSA_DAUCA (O80377) 40S ribosomal protein SA (p40)| Length = 297 Score = 39.3 bits (90), Expect = 0.009 Identities = 14/16 (87%), Positives = 16/16 (100%) Frame = -3 Query: 620 GHKWEIMVDLFFYRDP 573 GHKWE+MVDLFFYR+P Sbjct: 192 GHKWEVMVDLFFYREP 207
>RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin receptor| homolog) Length = 298 Score = 37.7 bits (86), Expect = 0.027 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -3 Query: 620 GHKWEIMVDLFFYRDPXXXXXXXXXXXLGAPEYAAV--AEYTAPAGD 486 G KW++MVDLFFYR+P EY A+ EY GD Sbjct: 196 GQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVGGD 242
>RSSA_CICAR (O65751) 40S ribosomal protein SA (p40)| Length = 300 Score = 35.4 bits (80), Expect = 0.14 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = -3 Query: 620 GHKWEIMVDLFFYRDPXXXXXXXXXXXLGAPEYAAVAEYTAPA 492 G KW++MVDLFFYR+P + AP+Y A+A++ A Sbjct: 195 GLKWDVMVDLFFYREP-EEAKQPEEDEVAAPDY-AIADFNVSA 235
>RSSA_URECA (P38981) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding| protein) Length = 317 Score = 34.7 bits (78), Expect = 0.23 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 7/46 (15%) Frame = -3 Query: 611 WEIMVDLFFYRDPXXXXXXXXXXXLGA-------PEYAAVAEYTAP 495 WE+MVDLFFYRDP A E+ A +TAP Sbjct: 195 WEVMVDLFFYRDPEEAEKEAQAEQAAAEKDKAPKEEFTADQAFTAP 240
>RSSA_SOYBN (O22518) 40S ribosomal protein SA (p40)| Length = 310 Score = 33.9 bits (76), Expect = 0.40 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = -3 Query: 620 GHKWEIMVDLFFYRDP 573 G KW++MVDLFFYR+P Sbjct: 199 GLKWDVMVDLFFYREP 214
>RSSA_CHICK (P50890) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) (37LRP) Length = 296 Score = 33.1 bits (74), Expect = 0.68 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -3 Query: 617 HKWEIMVDLFFYRDPXXXXXXXXXXXLGA-PEYAAVAEYTAPA 492 H WE+M DL+FYRDP A + E+TAPA Sbjct: 193 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQTEWTAPA 235
>RSSA_RAT (P38983) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 33.1 bits (74), Expect = 0.68 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -3 Query: 617 HKWEIMVDLFFYRDPXXXXXXXXXXXLGA-PEYAAVAEYTAPA 492 H WE+M DL+FYRDP A + E+TAPA Sbjct: 192 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA 234
>RSSA_MOUSE (P14206) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 33.1 bits (74), Expect = 0.68 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -3 Query: 617 HKWEIMVDLFFYRDPXXXXXXXXXXXLGA-PEYAAVAEYTAPA 492 H WE+M DL+FYRDP A + E+TAPA Sbjct: 192 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA 234
>RSSA_HUMAN (P08865) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) (Colon carcinoma laminin-binding protein) (NEM/1CHD4) (Multidrug resistance-associated protein MGr1-Ag) Length = 294 Score = 33.1 bits (74), Expect = 0.68 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -3 Query: 617 HKWEIMVDLFFYRDPXXXXXXXXXXXLGA-PEYAAVAEYTAPA 492 H WE+M DL+FYRDP A + E+TAPA Sbjct: 192 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA 234
>RSSA_CRIGR (P38982) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 33.1 bits (74), Expect = 0.68 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -3 Query: 617 HKWEIMVDLFFYRDPXXXXXXXXXXXLGA-PEYAAVAEYTAPA 492 H WE+M DL+FYRDP A + E+TAPA Sbjct: 192 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA 234
>RSSA_BOVIN (P26452) 40S ribosomal protein SA (p40) (C10 protein)| Length = 294 Score = 33.1 bits (74), Expect = 0.68 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -3 Query: 617 HKWEIMVDLFFYRDPXXXXXXXXXXXLGA-PEYAAVAEYTAPA 492 H WE+M DL+FYRDP A + E+TAPA Sbjct: 192 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA 234
>RSSAB_ARATH (Q8H173) 40S ribosomal protein SA-2 (p40 protein homolog)| Length = 280 Score = 33.1 bits (74), Expect = 0.68 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -3 Query: 614 KWEIMVDLFFYRDPXXXXXXXXXXXLGAPEYAAVAEYTAPAGD 486 KW++MVDLFFYR+P G E A+Y GD Sbjct: 199 KWDVMVDLFFYREP------EEAKQEGDEEAEVQADYGMVGGD 235
>RSSA_BRANA (Q9ZSR8) 40S ribosomal protein SA (p40) (Laminin receptor-like| protein) Length = 292 Score = 32.7 bits (73), Expect = 0.88 Identities = 11/14 (78%), Positives = 14/14 (100%) Frame = -3 Query: 614 KWEIMVDLFFYRDP 573 KW++MVDLFFYR+P Sbjct: 195 KWDVMVDLFFYREP 208
>RS0_NEUCR (Q01291) 40S ribosomal protein S0 (Ribosome-associated protein 1)| Length = 290 Score = 31.2 bits (69), Expect = 2.6 Identities = 10/13 (76%), Positives = 13/13 (100%) Frame = -3 Query: 611 WEIMVDLFFYRDP 573 W++MVDL+FYRDP Sbjct: 198 WDVMVDLYFYRDP 210
>RSSA_STRPU (P46771) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding| protein) (Fragment) Length = 264 Score = 31.2 bits (69), Expect = 2.6 Identities = 11/13 (84%), Positives = 13/13 (100%) Frame = -3 Query: 611 WEIMVDLFFYRDP 573 WEIMVDL+F+RDP Sbjct: 118 WEIMVDLYFFRDP 130
>RS0B_SCHPO (Q9P546) 40S ribosomal protein S0-B| Length = 287 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Frame = -3 Query: 611 WEIMVDLFFYRDP---XXXXXXXXXXXLGAPEYAAVAEYTAPA 492 WE+M DL+FYRDP A E A +A TA A Sbjct: 198 WEVMPDLYFYRDPEEIEREEEQKAAAAAAAEEEAQLAAQTAAA 240
>RS0_PNECA (Q01661) 40S ribosomal protein S0 (Extracellular matrix receptor| protein) Length = 295 Score = 30.4 bits (67), Expect = 4.4 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = -3 Query: 614 KWEIMVDLFFYRDP 573 +W IMVDL+FYRDP Sbjct: 193 EWGIMVDLYFYRDP 206
>RSSA_DROME (P38979) 40S ribosomal protein SA (p40) (Stubarista protein)| (Laminin receptor homolog) (K14) Length = 270 Score = 30.0 bits (66), Expect = 5.7 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = -3 Query: 614 KWEIMVDLFFYRDP 573 +W ++VDLFFYRDP Sbjct: 194 EWPVVVDLFFYRDP 207
>RS0_CANAL (O42817) 40S ribosomal protein S0| Length = 253 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Frame = -3 Query: 614 KWEIMVDLFFYRDP-----XXXXXXXXXXXLGAPEYAAVAEYTAPAGD 486 +W +M DL+FYRDP GAP A E+T D Sbjct: 194 EWSVMPDLYFYRDPEEIEQNAVEEAKTEGVEGAPVAEAETEWTGETED 241
>RSSA_CHLVR (P38984) 40S ribosomal protein SA (p40) (33 kDa laminin-binding| protein) Length = 293 Score = 29.3 bits (64), Expect = 9.8 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = -3 Query: 611 WEIMVDLFFYRDP 573 W +M DLFFYRDP Sbjct: 195 WNVMPDLFFYRDP 207
>RS0A_SCHPO (Q9Y7L8) 40S ribosomal protein S0-A| Length = 292 Score = 29.3 bits (64), Expect = 9.8 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Frame = -3 Query: 611 WEIMVDLFFYRDP--XXXXXXXXXXXLGAPEYAAVAEYTAPA 492 W++M DL+FYRDP A E A V E A A Sbjct: 197 WDVMPDLYFYRDPEEVEREEEAKKAAAAAAEEAQVEEAVAAA 238
>RSSA_TRIGR (P38980) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding| protein) Length = 316 Score = 29.3 bits (64), Expect = 9.8 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = -3 Query: 611 WEIMVDLFFYRDP 573 WEIM DL+F+RDP Sbjct: 195 WEIMCDLYFFRDP 207 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,733,718 Number of Sequences: 219361 Number of extensions: 1351819 Number of successful extensions: 2883 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2739 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2874 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
