ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22f14 |
|---|---|
| Clone Library Name | barley_pub |
>TUB_RAT (O88808) Tubby protein homolog| Length = 505 Score = 91.7 bits (226), Expect = 1e-18 Identities = 50/120 (41%), Positives = 66/120 (55%) Frame = -1 Query: 547 ERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXX 368 E + L+NK P W++ Q + LNF GRVT ASVKNFQ+ Sbjct: 419 ESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHG------------------- 459 Query: 367 XXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 188 +D + +++QFG+V +D+FTMDY YPL A QAFAI L+SFD+KLACE Sbjct: 460 --------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
>TUB_MOUSE (P50586) Tubby protein| Length = 505 Score = 91.7 bits (226), Expect = 1e-18 Identities = 50/120 (41%), Positives = 66/120 (55%) Frame = -1 Query: 547 ERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXX 368 E + L+NK P W++ Q + LNF GRVT ASVKNFQ+ Sbjct: 419 ESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHG------------------- 459 Query: 367 XXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 188 +D + +++QFG+V +D+FTMDY YPL A QAFAI L+SFD+KLACE Sbjct: 460 --------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
>TUB_HUMAN (P50607) Tubby protein homolog| Length = 506 Score = 91.7 bits (226), Expect = 1e-18 Identities = 50/120 (41%), Positives = 66/120 (55%) Frame = -1 Query: 547 ERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXX 368 E + L+NK P W++ Q + LNF GRVT ASVKNFQ+ Sbjct: 420 ESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHG------------------- 460 Query: 367 XXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 188 +D + +++QFG+V +D+FTMDY YPL A QAFAI L+SFD+KLACE Sbjct: 461 --------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506
>TULP3_HUMAN (O75386) Tubby-related protein 3 (Tubby-like protein 3)| Length = 442 Score = 90.9 bits (224), Expect = 2e-18 Identities = 51/120 (42%), Positives = 64/120 (53%) Frame = -1 Query: 547 ERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXX 368 E + L NK P W+ Q + LNFRGRVT ASVKNFQL Sbjct: 356 ENLVELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQLV--------------------- 394 Query: 367 XXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 188 +D + +++QFG+V D+FT+DY YPL A QAFAI L+SFD+KLACE Sbjct: 395 ------------HKNDPDYIVMQFGRVADDVFTLDYNYPLCAVQAFAISLSSFDSKLACE 442
>TULP1_MOUSE (Q9Z273) Tubby-related protein 1 (Tubby-like protein 1)| Length = 543 Score = 90.5 bits (223), Expect = 3e-18 Identities = 52/120 (43%), Positives = 64/120 (53%) Frame = -1 Query: 547 ERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXX 368 E + L NK P W+E + LNF+GRVT ASVKNFQ+ A Sbjct: 457 ESLIELHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHA------------------- 497 Query: 367 XXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 188 D + ++LQFG+V +D FT+DYRYPL A QAFAI L+SFD KLACE Sbjct: 498 --------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 543
>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)| Length = 542 Score = 89.4 bits (220), Expect = 7e-18 Identities = 51/120 (42%), Positives = 64/120 (53%) Frame = -1 Query: 547 ERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXX 368 E + L NK P W++ + LNF+GRVT ASVKNFQ+ A Sbjct: 456 ESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA------------------- 496 Query: 367 XXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 188 D + ++LQFG+V +D FT+DYRYPL A QAFAI L+SFD KLACE Sbjct: 497 --------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 542
>TULP3_MOUSE (O88413) Tubby-related protein 3 (Tubby-like protein 3)| Length = 460 Score = 89.4 bits (220), Expect = 7e-18 Identities = 49/123 (39%), Positives = 66/123 (53%) Frame = -1 Query: 556 EAKERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXX 377 ++ E + L NK P W++ Q + LNF GRVT ASVKNFQ+ Sbjct: 371 KSMENLIELHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHG---------------- 414 Query: 376 XXXXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKL 197 +D + +++QFG+V D+FT+DY YPL A QAFAI L+SFD+KL Sbjct: 415 -----------------NDPDYIVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKL 457 Query: 196 ACE 188 ACE Sbjct: 458 ACE 460
>TULP2_MOUSE (P46686) Tubby-related protein 2 (Tubby-like protein 2) (P4-6| protein) (Fragment) Length = 564 Score = 87.8 bits (216), Expect = 2e-17 Identities = 48/117 (41%), Positives = 63/117 (53%) Frame = -1 Query: 538 LVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXXXXX 359 L+L+NK P W ++ + LNF GRVT ASVKNFQ+ Sbjct: 481 LLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHP---------------------- 518 Query: 358 XXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 188 + + ++LQFG+V ++FTMD+RYPL QAFAICL+SFD KLACE Sbjct: 519 -----------DEPDHLVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLACE 564
>TUB1_CAEEL (Q09306) Tubby protein homolog 1| Length = 426 Score = 87.8 bits (216), Expect = 2e-17 Identities = 48/116 (41%), Positives = 63/116 (54%) Frame = -1 Query: 535 VLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXXXXXX 356 +L NK P+W+++ Q + LNF GRVT ASVKNFQ+ Sbjct: 344 ILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQII------------------------- 378 Query: 355 XXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 188 S E +++QFG+++ D FTMD+RYPLSA QAF I +TSF KLACE Sbjct: 379 --------HQSSPEYIVMQFGRISDDEFTMDFRYPLSAVQAFGIAMTSFHGKLACE 426
>TULP2_HUMAN (O00295) Tubby-related protein 2 (Tubby-like protein 2)| Length = 520 Score = 72.8 bits (177), Expect = 7e-13 Identities = 43/115 (37%), Positives = 57/115 (49%) Frame = -1 Query: 550 KERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXX 371 K+ L+L NK P W ++ + LNF GRVT ASVKNFQ+ Q Sbjct: 439 KQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDPKHQ--------------- 483 Query: 370 XXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFD 206 E ++LQFG+V D FTMD+ +P S QAF+ICL+SF+ Sbjct: 484 ------------------EHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
>TULP4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1547 Score = 56.2 bits (134), Expect = 6e-08 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Frame = -1 Query: 571 DEEDGEAKERPLV--LRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAV 398 ++EDG + V + NK P W+E Q + L+F GRVT S KNFQ+ QV Sbjct: 1456 EKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQV----- 1510 Query: 397 LXXXXXXXXXXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICL 218 +QFG++ + + +D++YP SA QAFA+ L Sbjct: 1511 -------------------------------MQFGRIDGNAYILDFQYPFSAVQAFAVAL 1539 Query: 217 TSFDTKL 197 + +L Sbjct: 1540 ANVTQRL 1546
>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1544 Score = 55.8 bits (133), Expect = 8e-08 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%) Frame = -1 Query: 571 DEEDGEAKERPLV--LRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAV 398 ++EDG + V + NK P W+E Q + L+F GRVT S KNFQ+ QV Sbjct: 1453 EKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQV----- 1507 Query: 397 LXXXXXXXXXXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICL 218 +QFG++ + +D++YP SA QAFA+ L Sbjct: 1508 -------------------------------MQFGRIDGSAYILDFQYPFSAVQAFAVAL 1536 Query: 217 TSFDTKL 197 + +L Sbjct: 1537 ANVTQRL 1543
>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2| Length = 925 Score = 32.7 bits (73), Expect = 0.76 Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = -3 Query: 557 GGQGEALGPPQQGAEMART-AAVLVPQLP-RPGDGGLREELPA 435 GG GEA PP Q A T AA P+ P RPG R PA Sbjct: 99 GGNGEAAAPPAQPGGTATTPAAQATPEAPARPGPAAARPSAPA 141
>DMAW_EPINE (Q6X2E3) Tryptophan dimethylallyltransferase (EC 2.5.1.34) (DMATS)| (All-trans-hexaprenyl-diphosphate synthase) (L-tryptophan dimethylallyl transferase) Length = 450 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/58 (25%), Positives = 30/58 (51%) Frame = -2 Query: 180 TSSTSIYVSYQHLFFYVSVVDLLIYSLSVKNGKKSKGLVVATFFMPLNLSVHCNSKXI 7 T++ SIY YQHL Y S + + ++G++ ++ + P LS++C+ + Sbjct: 43 TANYSIYAQYQHLSIYKSHIIPFLGVYPTRSGERWLS-ILTRYGTPFELSLNCSDSIV 99
>DMAW2_ACRCO (Q6X2E1) Tryptophan dimethylallyltransferase 2 (EC 2.5.1.34) (DMATS| 2) (All-trans-hexaprenyl-diphosphate synthase 2) (L-tryptophan dimethylallyl transferase 2) Length = 450 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/58 (25%), Positives = 30/58 (51%) Frame = -2 Query: 180 TSSTSIYVSYQHLFFYVSVVDLLIYSLSVKNGKKSKGLVVATFFMPLNLSVHCNSKXI 7 T++ SIY YQHL Y S + + ++G++ ++ + P LS++C+ + Sbjct: 43 TANYSIYAQYQHLSIYKSHIIPFLGVYPTRSGERWLS-ILTRYGTPFELSLNCSDSIV 99
>CYSD_SALTY (P65672) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) Length = 302 Score = 29.6 bits (65), Expect = 6.4 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Frame = -1 Query: 577 RRDEEDGEAKERPLVLRNKVPRW---HEQLQCWCLNFRGRVTVA-SVKNFQLT 431 RRDEE AKER R++ RW +++ + W N+ G++ S++ F L+ Sbjct: 136 RRDEEKSRAKERIYSFRDRFHRWDPKNQRPELW-RNYNGQINKGESIRVFPLS 187
>CYSD_SALTI (P65673) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) Length = 302 Score = 29.6 bits (65), Expect = 6.4 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Frame = -1 Query: 577 RRDEEDGEAKERPLVLRNKVPRW---HEQLQCWCLNFRGRVTVA-SVKNFQLT 431 RRDEE AKER R++ RW +++ + W N+ G++ S++ F L+ Sbjct: 136 RRDEEKSRAKERIYSFRDRFHRWDPKNQRPELW-RNYNGQINKGESIRVFPLS 187
>CYSD_YERPE (Q8ZBP1) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) Length = 302 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Frame = -1 Query: 577 RRDEEDGEAKERPLVLRNKVPRW---HEQLQCWCLNFRGRVTVA-SVKNFQLT 431 RRDEE AKER R++ RW +++ + W N+ G++ S++ F L+ Sbjct: 136 RRDEEKSRAKERIYSFRDRFHRWDPKNQRPELW-HNYNGQINKGESIRVFPLS 187
>CYSD_SHIFL (P59740) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) Length = 302 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Frame = -1 Query: 577 RRDEEDGEAKERPLVLRNKVPRW---HEQLQCWCLNFRGRVTVA-SVKNFQLT 431 RRDEE AKER R++ RW +++ + W N+ G++ S++ F L+ Sbjct: 136 RRDEEKSRAKERIYSFRDRFHRWDPKNQRPELW-HNYNGQINKGESIRVFPLS 187
>CYSD_ECOLI (P21156) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) Length = 302 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Frame = -1 Query: 577 RRDEEDGEAKERPLVLRNKVPRW---HEQLQCWCLNFRGRVTVA-SVKNFQLT 431 RRDEE AKER R++ RW +++ + W N+ G++ S++ F L+ Sbjct: 136 RRDEEKSRAKERIYSFRDRFHRWDPKNQRPELW-HNYNGQINKGESIRVFPLS 187
>CYSD_ECOL6 (Q8FEJ0) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) Length = 302 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Frame = -1 Query: 577 RRDEEDGEAKERPLVLRNKVPRW---HEQLQCWCLNFRGRVTVA-SVKNFQLT 431 RRDEE AKER R++ RW +++ + W N+ G++ S++ F L+ Sbjct: 136 RRDEEKSRAKERIYSFRDRFHRWDPKNQRPELW-HNYNGQINKGESIRVFPLS 187
>CYSD_ECO57 (Q8X7X4) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) Length = 302 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Frame = -1 Query: 577 RRDEEDGEAKERPLVLRNKVPRW---HEQLQCWCLNFRGRVTVA-SVKNFQLT 431 RRDEE AKER R++ RW +++ + W N+ G++ S++ F L+ Sbjct: 136 RRDEEKSRAKERIYSFRDRFHRWDPKNQRPELW-HNYNGQINKGESIRVFPLS 187 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,717,433 Number of Sequences: 219361 Number of extensions: 1213418 Number of successful extensions: 3980 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3847 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3977 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
