ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22f13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 1e-42
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 143 9e-31
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 143 9e-31
4emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559... 143 9e-31
5emb|AL831809.3|CNS08CAM Oryza sativa chromosome 12, . BAC OJ1268... 143 9e-31
6ref|XM_506914.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.003
7ref|XM_469245.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.003
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 0.003
9gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genom... 52 0.003
10dbj|AK061864.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
12dbj|AK103691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
13ref|XM_588550.2| PREDICTED: Bos taurus hypothetical LOC511252 (L... 44 0.65
14emb|AL808128.4| Mouse DNA sequence from clone RP23-387C21 on chr... 44 0.65
15gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 42 2.6
16gb|AF547987.1| Enterobacteria phage Sf6, complete genome 42 2.6
17ref|XM_981446.1| PREDICTED: Mus musculus similar to 60S ribosoma... 42 2.6
18ref|XM_915842.2| PREDICTED: Mus musculus similar to 60S ribosoma... 42 2.6
19ref|XM_483949.4| PREDICTED: Mus musculus similar to 60S ribosoma... 42 2.6
20gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosom... 42 2.6
21gb|CP000243.1| Escherichia coli UTI89, complete genome 42 2.6
22gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 42 2.6
23dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 42 2.6
24dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
25gb|AC010899.8| Homo sapiens BAC clone RP11-543K1 from 2, complet... 42 2.6
26gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 42 2.6
27dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
28dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
29emb|X59553.1|SF6INTOAC Shigella flexneri bacteriophage VI int an... 42 2.6
30dbj|AK114396.1| Ciona intestinalis cDNA, clone:cicl061p22, full ... 42 2.6
31dbj|AP004447.1| Pterocaesio tile mitochondrial DNA, complete genome 42 2.6
32gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 42 2.6
33dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 42 2.6
34gb|CP000038.1| Shigella sonnei Ss046, complete genome 42 2.6
35gb|U11296.1|ECU11296 Escherichia coli K12 tRNAarg5 (argW) gene, ... 42 2.6 
>dbj|AK103521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131J04, full
            insert sequence
          Length = 3054

 Score =  182 bits (92), Expect = 1e-42
 Identities = 292/361 (80%)
 Strand = Plus / Minus

                                                                        
Query: 316  cttggtcctcatcattcccgacggtcaggattttctccatctttatatcttcagtgtcag 375
            |||| ||||||||  ||||||| ||| | ||||||||||    |||||||||||||||  
Sbjct: 2547 cttgttcctcatcgctcccgacagtctgaattttctccaagggtatatcttcagtgtcgt 2488

                                                                        
Query: 376  ggaactggcgatacgcagaacggagtccatggtgaatatgttccattcttcctgacctta 435
            ||||||| | ||| |||||| | || |  |||||||| |  |||||||||||||||| | 
Sbjct: 2487 ggaactgacaataggcagaatgaagccggtggtgaatttcatccattcttcctgaccgtt 2428

                                                                        
Query: 436  cgtcttccctgtccaggtcgattaagtcctgcgtcggaaaagttttgaatagaggaagaa 495
            ||||||||||||||| ||| ||||| ||||| |  ||   |||| ||||||  || ||||
Sbjct: 2427 cgtcttccctgtccatgtcaattaaatcctgtgctggggtagttctgaataatgggagaa 2368

                                                                        
Query: 496  atcgggttctacaatactgattgaaggaaaggataaagaagataggaggtatggcgaagc 555
             |||  |||| ||||||||||||||  | ||  | | || |||| ||||||||| |||||
Sbjct: 2367 gtcgatttctgcaatactgattgaataacagagtgaggatgataagaggtatggtgaagc 2308

                                                                        
Query: 556  ctgcagctactggtgannnnnnnaggccaaatacaccgaggcagatgatctgggtgagca 615
            ||||||||||||||||       |||||||||||||| |||||||| ||||| |||||||
Sbjct: 2307 ctgcagctactggtgattctttcaggccaaatacaccaaggcagataatctgtgtgagca 2248

                                                                        
Query: 616  cgagagagaatatcaccgtgttgtgtgcaattggccaatacaaaccaccactgtcatatc 675
            |||||||||||||||| | ||||||||| |||||||| |||||||| ||  |||||||||
Sbjct: 2247 cgagagagaatatcactgcgttgtgtgcgattggccagtacaaaccccctgtgtcatatc 2188

             
Query: 676  t 676
            |
Sbjct: 2187 t 2187



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 207  agacggctaacaggaagtcctttcagcgttgggtgagaca 246
            ||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 2644 agacggctaactgggagtccattcagtgttgggtgagaca 2605
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  143 bits (72), Expect = 9e-31
 Identities = 122/141 (86%)
 Strand = Plus / Plus

                                                                            
Query: 536      gataggaggtatggcgaagcctgcagctactggtgannnnnnnaggccaaatacaccgag 595
                |||| ||||||||| |||||||||||||||||||||       |||||||||||||| ||
Sbjct: 27191514 gataagaggtatggtgaagcctgcagctactggtgattctttcaggccaaatacaccaag 27191573

                                                                            
Query: 596      gcagatgatctgggtgagcacgagagagaatatcaccgtgttgtgtgcaattggccaata 655
                |||||| ||||| ||||||||||||||||||||||| | ||||||||| |||||||| ||
Sbjct: 27191574 gcagataatctgtgtgagcacgagagagaatatcactgcgttgtgtgcgattggccagta 27191633

                                     
Query: 656      caaaccaccactgtcatatct 676
                |||||| ||  ||||||||||
Sbjct: 27191634 caaaccccctgtgtcatatct 27191654



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 123/151 (81%)
 Strand = Plus / Plus

                                                                            
Query: 316      cttggtcctcatcattcccgacggtcaggattttctccatctttatatcttcagtgtcag 375
                |||| ||||||||  ||||||| ||| | ||||||||||    |||||||||||||||  
Sbjct: 27191144 cttgttcctcatcgctcccgacagtctgaattttctccaagggtatatcttcagtgtcgt 27191203

                                                                            
Query: 376      ggaactggcgatacgcagaacggagtccatggtgaatatgttccattcttcctgacctta 435
                ||||||| | ||| |||||| | || |  |||||||| |  |||||||||||||||| | 
Sbjct: 27191204 ggaactgacaataggcagaatgaagccggtggtgaatttcatccattcttcctgaccgtt 27191263

                                               
Query: 436      cgtcttccctgtccaggtcgattaagtcctg 466
                ||||||||||||||| ||| ||||| |||||
Sbjct: 27191264 cgtcttccctgtccatgtcaattaaatcctg 27191294



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 207      agacggctaacaggaagtcctttcagcgttgggtgagaca 246
                ||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 27191047 agacggctaactgggagtccattcagtgttgggtgagaca 27191086
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  143 bits (72), Expect = 9e-31
 Identities = 122/141 (86%)
 Strand = Plus / Plus

                                                                            
Query: 536      gataggaggtatggcgaagcctgcagctactggtgannnnnnnaggccaaatacaccgag 595
                |||| ||||||||| |||||||||||||||||||||       |||||||||||||| ||
Sbjct: 27117114 gataagaggtatggtgaagcctgcagctactggtgattctttcaggccaaatacaccaag 27117173

                                                                            
Query: 596      gcagatgatctgggtgagcacgagagagaatatcaccgtgttgtgtgcaattggccaata 655
                |||||| ||||| ||||||||||||||||||||||| | ||||||||| |||||||| ||
Sbjct: 27117174 gcagataatctgtgtgagcacgagagagaatatcactgcgttgtgtgcgattggccagta 27117233

                                     
Query: 656      caaaccaccactgtcatatct 676
                |||||| ||  ||||||||||
Sbjct: 27117234 caaaccccctgtgtcatatct 27117254



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 123/151 (81%)
 Strand = Plus / Plus

                                                                            
Query: 316      cttggtcctcatcattcccgacggtcaggattttctccatctttatatcttcagtgtcag 375
                |||| ||||||||  ||||||| ||| | ||||||||||    |||||||||||||||  
Sbjct: 27116744 cttgttcctcatcgctcccgacagtctgaattttctccaagggtatatcttcagtgtcgt 27116803

                                                                            
Query: 376      ggaactggcgatacgcagaacggagtccatggtgaatatgttccattcttcctgacctta 435
                ||||||| | ||| |||||| | || |  |||||||| |  |||||||||||||||| | 
Sbjct: 27116804 ggaactgacaataggcagaatgaagccggtggtgaatttcatccattcttcctgaccgtt 27116863

                                               
Query: 436      cgtcttccctgtccaggtcgattaagtcctg 466
                ||||||||||||||| ||| ||||| |||||
Sbjct: 27116864 cgtcttccctgtccatgtcaattaaatcctg 27116894



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 207      agacggctaacaggaagtcctttcagcgttgggtgagaca 246
                ||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 27116647 agacggctaactgggagtccattcagtgttgggtgagaca 27116686
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>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145816

 Score =  143 bits (72), Expect = 9e-31
 Identities = 122/141 (86%)
 Strand = Plus / Plus

                                                                          
Query: 536    gataggaggtatggcgaagcctgcagctactggtgannnnnnnaggccaaatacaccgag 595
              |||| ||||||||| |||||||||||||||||||||       |||||||||||||| ||
Sbjct: 130413 gataagaggtatggtgaagcctgcagctactggtgattctttcaggccaaatacaccaag 130472

                                                                          
Query: 596    gcagatgatctgggtgagcacgagagagaatatcaccgtgttgtgtgcaattggccaata 655
              |||||| ||||| ||||||||||||||||||||||| | ||||||||| |||||||| ||
Sbjct: 130473 gcagataatctgtgtgagcacgagagagaatatcactgcgttgtgtgcgattggccagta 130532

                                   
Query: 656    caaaccaccactgtcatatct 676
              |||||| ||  ||||||||||
Sbjct: 130533 caaaccccctgtgtcatatct 130553



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 123/151 (81%)
 Strand = Plus / Plus

                                                                          
Query: 316    cttggtcctcatcattcccgacggtcaggattttctccatctttatatcttcagtgtcag 375
              |||| ||||||||  ||||||| ||| | ||||||||||    |||||||||||||||  
Sbjct: 130043 cttgttcctcatcgctcccgacagtctgaattttctccaagggtatatcttcagtgtcgt 130102

                                                                          
Query: 376    ggaactggcgatacgcagaacggagtccatggtgaatatgttccattcttcctgacctta 435
              ||||||| | ||| |||||| | || |  |||||||| |  |||||||||||||||| | 
Sbjct: 130103 ggaactgacaataggcagaatgaagccggtggtgaatttcatccattcttcctgaccgtt 130162

                                             
Query: 436    cgtcttccctgtccaggtcgattaagtcctg 466
              ||||||||||||||| ||| ||||| |||||
Sbjct: 130163 cgtcttccctgtccatgtcaattaaatcctg 130193



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 207    agacggctaacaggaagtcctttcagcgttgggtgagaca 246
              ||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 129946 agacggctaactgggagtccattcagtgttgggtgagaca 129985
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>emb|AL831809.3|CNS08CAM Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 146585

 Score =  143 bits (72), Expect = 9e-31
 Identities = 122/141 (86%)
 Strand = Plus / Plus

                                                                        
Query: 536  gataggaggtatggcgaagcctgcagctactggtgannnnnnnaggccaaatacaccgag 595
            |||| ||||||||| |||||||||||||||||||||       |||||||||||||| ||
Sbjct: 4546 gataagaggtatggtgaagcctgcagctactggtgattctttcaggccaaatacaccaag 4605

                                                                        
Query: 596  gcagatgatctgggtgagcacgagagagaatatcaccgtgttgtgtgcaattggccaata 655
            |||||| ||||| ||||||||||||||||||||||| | ||||||||| |||||||| ||
Sbjct: 4606 gcagataatctgtgtgagcacgagagagaatatcactgcgttgtgtgcgattggccagta 4665

                                 
Query: 656  caaaccaccactgtcatatct 676
            |||||| ||  ||||||||||
Sbjct: 4666 caaaccccctgtgtcatatct 4686



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 123/151 (81%)
 Strand = Plus / Plus

                                                                        
Query: 316  cttggtcctcatcattcccgacggtcaggattttctccatctttatatcttcagtgtcag 375
            |||| ||||||||  ||||||| ||| | ||||||||||    |||||||||||||||  
Sbjct: 4176 cttgttcctcatcgctcccgacagtctgaattttctccaagggtatatcttcagtgtcgt 4235

                                                                        
Query: 376  ggaactggcgatacgcagaacggagtccatggtgaatatgttccattcttcctgacctta 435
            ||||||| | ||| |||||| | || |  |||||||| |  |||||||||||||||| | 
Sbjct: 4236 ggaactgacaataggcagaatgaagccggtggtgaatttcatccattcttcctgaccgtt 4295

                                           
Query: 436  cgtcttccctgtccaggtcgattaagtcctg 466
            ||||||||||||||| ||| ||||| |||||
Sbjct: 4296 cgtcttccctgtccatgtcaattaaatcctg 4326



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 207  agacggctaacaggaagtcctttcagcgttgggtgagaca 246
            ||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 4079 agacggctaactgggagtccattcagtgttgggtgagaca 4118
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>ref|XM_506914.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0035I24.8
            mRNA
          Length = 3641

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 61/75 (81%)
 Strand = Plus / Minus

                                                                        
Query: 551  gaagcctgcagctactggtgannnnnnnaggccaaatacaccgaggcagatgatctgggt 610
            |||||||||||||||||| ||       || ||||| ||||| || ||||||||||||||
Sbjct: 2959 gaagcctgcagctactggggattctttaagcccaaagacaccaagacagatgatctgggt 2900

                           
Query: 611  gagcacgagagagaa 625
            |||||| | ||||||
Sbjct: 2899 gagcacaatagagaa 2885
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>ref|XM_469245.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2582

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 61/75 (81%)
 Strand = Plus / Minus

                                                                        
Query: 551  gaagcctgcagctactggtgannnnnnnaggccaaatacaccgaggcagatgatctgggt 610
            |||||||||||||||||| ||       || ||||| ||||| || ||||||||||||||
Sbjct: 1896 gaagcctgcagctactggggattctttaagcccaaagacaccaagacagatgatctgggt 1837

                           
Query: 611  gagcacgagagagaa 625
            |||||| | ||||||
Sbjct: 1836 gagcacaatagagaa 1822
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 61/75 (81%)
 Strand = Plus / Plus

                                                                            
Query: 551      gaagcctgcagctactggtgannnnnnnaggccaaatacaccgaggcagatgatctgggt 610
                |||||||||||||||||| ||       || ||||| ||||| || ||||||||||||||
Sbjct: 26333157 gaagcctgcagctactggggattctttaagcccaaagacaccaagacagatgatctgggt 26333216

                               
Query: 611      gagcacgagagagaa 625
                |||||| | ||||||
Sbjct: 26333217 gagcacaatagagaa 26333231
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>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete
             sequence
          Length = 134728

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 61/75 (81%)
 Strand = Plus / Minus

                                                                         
Query: 551   gaagcctgcagctactggtgannnnnnnaggccaaatacaccgaggcagatgatctgggt 610
             |||||||||||||||||| ||       || ||||| ||||| || ||||||||||||||
Sbjct: 57483 gaagcctgcagctactggggattctttaagcccaaagacaccaagacagatgatctgggt 57424

                            
Query: 611   gagcacgagagagaa 625
             |||||| | ||||||
Sbjct: 57423 gagcacaatagagaa 57409
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>dbj|AK061864.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H05, full
           insert sequence
          Length = 1344

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 61/75 (81%)
 Strand = Plus / Minus

                                                                       
Query: 551 gaagcctgcagctactggtgannnnnnnaggccaaatacaccgaggcagatgatctgggt 610
           |||||||||||||||||| ||       || ||||| ||||| || ||||||||||||||
Sbjct: 658 gaagcctgcagctactggggattctttaagcccaaagacaccaagacagatgatctgggt 599

                          
Query: 611 gagcacgagagagaa 625
           |||||| | ||||||
Sbjct: 598 gagcacaatagagaa 584
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 61/75 (81%)
 Strand = Plus / Plus

                                                                            
Query: 551      gaagcctgcagctactggtgannnnnnnaggccaaatacaccgaggcagatgatctgggt 610
                |||||||||||||||||| ||       || ||||| ||||| || ||||||||||||||
Sbjct: 26424466 gaagcctgcagctactggggattctttaagcccaaagacaccaagacagatgatctgggt 26424525

                               
Query: 611      gagcacgagagagaa 625
                |||||| | ||||||
Sbjct: 26424526 gagcacaatagagaa 26424540
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>dbj|AK103691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136H09, full
            insert sequence
          Length = 3637

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 61/75 (81%)
 Strand = Plus / Minus

                                                                        
Query: 551  gaagcctgcagctactggtgannnnnnnaggccaaatacaccgaggcagatgatctgggt 610
            |||||||||||||||||| ||       || ||||| ||||| || ||||||||||||||
Sbjct: 2955 gaagcctgcagctactggggattctttaagcccaaagacaccaagacagatgatctgggt 2896

                           
Query: 611  gagcacgagagagaa 625
            |||||| | ||||||
Sbjct: 2895 gagcacaatagagaa 2881
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>ref|XM_588550.2| PREDICTED: Bos taurus hypothetical LOC511252 (LOC511252), mRNA
          Length = 4046

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 159  ctcttttctgtagtgcagatgacagt 184
            |||||||||| |||||||||||||||
Sbjct: 2217 ctcttttctgcagtgcagatgacagt 2242
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>emb|AL808128.4| Mouse DNA sequence from clone RP23-387C21 on chromosome 2, complete
             sequence
          Length = 184736

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 336   acggtcaggattttctccatctttat 361
             |||||||| |||||||||||||||||
Sbjct: 43295 acggtcagcattttctccatctttat 43320
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 333     ccgacggtcaggattttctcc 353
               |||||||||||||||||||||
Sbjct: 2477000 ccgacggtcaggattttctcc 2476980
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>gb|AF547987.1| Enterobacteria phage Sf6, complete genome
          Length = 39043

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   ccgacggtcaggattttctcc 353
             |||||||||||||||||||||
Sbjct: 17781 ccgacggtcaggattttctcc 17801
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>ref|XM_981446.1| PREDICTED: Mus musculus similar to 60S ribosomal protein L6
           (TAX-responsive enhancer element binding protein 107)
           (TAXREB107) (LOC432502), mRNA
          Length = 1059

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 270 tcgcaggtttcttctcctttg 290
           |||||||||||||||||||||
Sbjct: 61  tcgcaggtttcttctcctttg 41
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>ref|XM_915842.2| PREDICTED: Mus musculus similar to 60S ribosomal protein L6
           (TAX-responsive enhancer element binding protein 107)
           (TAXREB107) (LOC432502), mRNA
          Length = 1059

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 270 tcgcaggtttcttctcctttg 290
           |||||||||||||||||||||
Sbjct: 61  tcgcaggtttcttctcctttg 41
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>ref|XM_483949.4| PREDICTED: Mus musculus similar to 60S ribosomal protein L6
           (TAX-responsive enhancer element binding protein 107)
           (TAXREB107) (LOC432502), mRNA
          Length = 1059

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 270 tcgcaggtttcttctcctttg 290
           |||||||||||||||||||||
Sbjct: 61  tcgcaggtttcttctcctttg 41
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>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence
          Length = 179668

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    tcgcaggtttcttctcctttg 290
              |||||||||||||||||||||
Sbjct: 102745 tcgcaggtttcttctcctttg 102725
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 333     ccgacggtcaggattttctcc 353
               |||||||||||||||||||||
Sbjct: 2597690 ccgacggtcaggattttctcc 2597670
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 333     ccgacggtcaggattttctcc 353
               |||||||||||||||||||||
Sbjct: 2464724 ccgacggtcaggattttctcc 2464704
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 333     ccgacggtcaggattttctcc 353
               |||||||||||||||||||||
Sbjct: 2472148 ccgacggtcaggattttctcc 2472128
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 149      attgtccgacctcttttctgt 169
                |||||||||||||||||||||
Sbjct: 34453637 attgtccgacctcttttctgt 34453657
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>gb|AC010899.8| Homo sapiens BAC clone RP11-543K1 from 2, complete sequence
          Length = 210232

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 704   acaaatacataaatggcagat 724
             |||||||||||||||||||||
Sbjct: 52551 acaaatacataaatggcagat 52531
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 333     ccgacggtcaggattttctcc 353
               |||||||||||||||||||||
Sbjct: 2455119 ccgacggtcaggattttctcc 2455099
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>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0468B07
          Length = 169071

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 149    attgtccgacctcttttctgt 169
              |||||||||||||||||||||
Sbjct: 135981 attgtccgacctcttttctgt 136001
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>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0425G02
          Length = 155432

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   attgtccgacctcttttctgt 169
             |||||||||||||||||||||
Sbjct: 29356 attgtccgacctcttttctgt 29376
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>emb|X59553.1|SF6INTOAC Shigella flexneri bacteriophage VI int and oac genes for integrase
           and O-antigen acetylase
          Length = 2694

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 333 ccgacggtcaggattttctcc 353
           |||||||||||||||||||||
Sbjct: 334 ccgacggtcaggattttctcc 314
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>dbj|AK114396.1| Ciona intestinalis cDNA, clone:cicl061p22, full insert sequence
          Length = 1738

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 336  acggtcaggattttctccatcttta 360
            |||||||||||||||||| ||||||
Sbjct: 1166 acggtcaggattttctccttcttta 1142
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>dbj|AP004447.1| Pterocaesio tile mitochondrial DNA, complete genome
          Length = 16496

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 266   ttcctcgcaggtttcttctcc 286
             |||||||||||||||||||||
Sbjct: 13131 ttcctcgcaggtttcttctcc 13151
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 333     ccgacggtcaggattttctcc 353
               |||||||||||||||||||||
Sbjct: 3263257 ccgacggtcaggattttctcc 3263237
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 333     ccgacggtcaggattttctcc 353
               |||||||||||||||||||||
Sbjct: 3193301 ccgacggtcaggattttctcc 3193281
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 333     ccgacggtcaggattttctcc 353
               |||||||||||||||||||||
Sbjct: 2540779 ccgacggtcaggattttctcc 2540759
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>gb|U11296.1|ECU11296 Escherichia coli K12 tRNAarg5 (argW) gene, complete sequence, and
            putative integrase gene, complete cds
          Length = 2759

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 333  ccgacggtcaggattttctcc 353
            |||||||||||||||||||||
Sbjct: 1705 ccgacggtcaggattttctcc 1685


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,928,488
Number of Sequences: 3902068
Number of extensions: 5928488
Number of successful extensions: 117084
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116699
Number of HSP's gapped (non-prelim): 380
length of query: 738
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 715
effective length of database: 17,143,297,704
effective search space: 12257457858360
effective search space used: 12257457858360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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