ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108633.1| Zea mays PCO100878 mRNA sequence 200 3e-48
2ref|XM_549828.1| Oryza sativa (japonica cultivar-group), mRNA 131 2e-27
3ref|XM_549827.1| Oryza sativa (japonica cultivar-group), mRNA 131 2e-27
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
5dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
6dbj|AK103808.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
7dbj|AK072087.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
8ref|NM_115236.3| Arabidopsis thaliana tubulin binding AT3G53760 ... 44 0.41
9gb|BT013556.1| Lycopersicon esculentum clone 132293F, mRNA sequence 44 0.41
10gb|BT012412.1| Arabidopsis thaliana At3g53760 mRNA, complete cds 44 0.41
11gb|BT012227.1| Arabidopsis thaliana At3g53760 gene, complete cds 44 0.41
12emb|AL132960.2|ATF5K20 Arabidopsis thaliana DNA chromosome 3, BA... 44 0.41
13emb|BX823602.1|CNS0A7EV Arabidopsis thaliana Full-length cDNA Co... 44 0.41
14gb|AC118708.4| Mus musculus chromosome 7, clone RP24-118K11, com... 42 1.6
15emb|AL445933.32| Human DNA sequence from clone RP11-486B10 on ch... 42 1.6
16emb|AL022336.1|HS78F24 Human DNA sequence from clone RP1-78F24 o... 42 1.6
17gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 42 1.6
18gb|AF288742.1|AF288742 Homo sapiens oxysterol binding protein 2 ... 42 1.6
19dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.6
20emb|CR626872.8| Zebrafish DNA sequence from clone DKEY-38L22 in ... 40 6.4
21emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete ch... 40 6.4
22gb|AC139100.3| Homo sapiens chromosome 18, clone, complete sequence 40 6.4
23ref|XM_966293.1| PREDICTED: Tribolium castaneum similar to methy... 40 6.4
24ref|XM_779962.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.4
25emb|Y11708.1|RELIPAGEN R.etli lipA gene 40 6.4
26gb|AC090360.9| Homo sapiens chromosome 18, clone RP11-795F19, co... 40 6.4
27dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 6.4
28emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, com... 40 6.4
29gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 6.4
30gb|AC105381.2| Homo sapiens BAC clone RP11-6G22 from 2, complete... 40 6.4
31dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
32dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
33emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D ... 40 6.4
34gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.4
35emb|BX284693.6| Zebrafish DNA sequence from clone DKEY-179M13 in... 40 6.4
36emb|BX537710.1|HSM805785 Homo sapiens mRNA; cDNA DKFZp686A2393 (... 40 6.4
37gb|AY557374.1| Leishmania donovani isolate MHOM/ET/67/HU3 miniex... 40 6.4 
>gb|AY108633.1| Zea mays PCO100878 mRNA sequence
          Length = 582

 Score =  200 bits (101), Expect = 3e-48
 Identities = 157/175 (89%), Gaps = 3/175 (1%)
 Strand = Plus / Minus

                                                                       
Query: 304 tttcagcgaggtgtccggacctccaatggcagcatcggagaagtcgcgctggtgctggtc 363
           ||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 565 tttcagcgaggagtccggacctccaacggcagcattggagacgtcgcgctggtgctcgtc 506

                                                                       
Query: 364 ccgctcctcagctgct---cagacgctgctgacttgagctcaagctgctgcagctgatgg 420
           |||||||| |||||||   | |||||||| ||||||||||||||||||||||||||||| 
Sbjct: 505 ccgctccttagctgctgctcggacgctgcagacttgagctcaagctgctgcagctgatgc 446

                                                                  
Query: 421 acgacgtgggacatccttggccgcaccgaggggacatgctgggtgcaggcgtaga 475
           |||||||| |||||||| || |||||||| ||||| ||||||||||||| |||||
Sbjct: 445 acgacgtgcgacatcctcgggcgcaccgaagggacgtgctgggtgcaggagtaga 391
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>ref|XM_549828.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2066

 Score =  131 bits (66), Expect = 2e-27
 Identities = 146/172 (84%), Gaps = 3/172 (1%)
 Strand = Plus / Minus

                                                                        
Query: 304  tttcagcgaggtgtccggacctccaatggcagcatcggagaagtcgcgctggtgctggtc 363
            ||||||||||| ||||| ||||||||||| | ||| ||||| || ||||| ||||| || 
Sbjct: 1752 tttcagcgaggagtccgaacctccaatggtaacattggagatgtagcgctagtgcttgtg 1693

                                                                        
Query: 364  ccgctcctcagctgctcagacgctgctgacttgagctcaagctgctgcagctgatggacg 423
            ||||||   || || || || ||||||||||| |||||||| ||||| ||||||||||| 
Sbjct: 1692 ccgctc---agttgttctgatgctgctgactttagctcaagttgctggagctgatggacc 1636

                                                                
Query: 424  acgtgggacatccttggccgcaccgaggggacatgctgggtgcaggcgtaga 475
            || || ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 1635 acatgagacatccttggtcgcaccgaagggacatgctgggtgcaggcataga 1584
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>ref|XM_549827.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2041

 Score =  131 bits (66), Expect = 2e-27
 Identities = 146/172 (84%), Gaps = 3/172 (1%)
 Strand = Plus / Minus

                                                                        
Query: 304  tttcagcgaggtgtccggacctccaatggcagcatcggagaagtcgcgctggtgctggtc 363
            ||||||||||| ||||| ||||||||||| | ||| ||||| || ||||| ||||| || 
Sbjct: 1724 tttcagcgaggagtccgaacctccaatggtaacattggagatgtagcgctagtgcttgtg 1665

                                                                        
Query: 364  ccgctcctcagctgctcagacgctgctgacttgagctcaagctgctgcagctgatggacg 423
            ||||||   || || || || ||||||||||| |||||||| ||||| ||||||||||| 
Sbjct: 1664 ccgctc---agttgttctgatgctgctgactttagctcaagttgctggagctgatggacc 1608

                                                                
Query: 424  acgtgggacatccttggccgcaccgaggggacatgctgggtgcaggcgtaga 475
            || || ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 1607 acatgagacatccttggtcgcaccgaagggacatgctgggtgcaggcataga 1556
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score =  131 bits (66), Expect = 2e-27
 Identities = 146/172 (84%), Gaps = 3/172 (1%)
 Strand = Plus / Plus

                                                                          
Query: 304    tttcagcgaggtgtccggacctccaatggcagcatcggagaagtcgcgctggtgctggtc 363
              ||||||||||| ||||| ||||||||||| | ||| ||||| || ||||| ||||| || 
Sbjct: 205448 tttcagcgaggagtccgaacctccaatggtaacattggagatgtagcgctagtgcttgtg 205507

                                                                          
Query: 364    ccgctcctcagctgctcagacgctgctgacttgagctcaagctgctgcagctgatggacg 423
              ||||||   || || || || ||||||||||| |||||||| ||||| ||||||||||| 
Sbjct: 205508 ccgctc---agttgttctgatgctgctgactttagctcaagttgctggagctgatggacc 205564

                                                                  
Query: 424    acgtgggacatccttggccgcaccgaggggacatgctgggtgcaggcgtaga 475
              || || ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 205565 acatgagacatccttggtcgcaccgaagggacatgctgggtgcaggcataga 205616



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 363      cccgctcctcagctgctcag 382
                ||||||||||||||||||||
Sbjct: 18429188 cccgctcctcagctgctcag 18429207
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>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0436E04
          Length = 144644

 Score =  131 bits (66), Expect = 2e-27
 Identities = 146/172 (84%), Gaps = 3/172 (1%)
 Strand = Plus / Plus

                                                                         
Query: 304   tttcagcgaggtgtccggacctccaatggcagcatcggagaagtcgcgctggtgctggtc 363
             ||||||||||| ||||| ||||||||||| | ||| ||||| || ||||| ||||| || 
Sbjct: 47118 tttcagcgaggagtccgaacctccaatggtaacattggagatgtagcgctagtgcttgtg 47177

                                                                         
Query: 364   ccgctcctcagctgctcagacgctgctgacttgagctcaagctgctgcagctgatggacg 423
             ||||||   || || || || ||||||||||| |||||||| ||||| ||||||||||| 
Sbjct: 47178 ccgctc---agttgttctgatgctgctgactttagctcaagttgctggagctgatggacc 47234

                                                                 
Query: 424   acgtgggacatccttggccgcaccgaggggacatgctgggtgcaggcgtaga 475
             || || ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 47235 acatgagacatccttggtcgcaccgaagggacatgctgggtgcaggcataga 47286
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>dbj|AK103808.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147A10, full
            insert sequence
          Length = 2066

 Score =  131 bits (66), Expect = 2e-27
 Identities = 146/172 (84%), Gaps = 3/172 (1%)
 Strand = Plus / Minus

                                                                        
Query: 304  tttcagcgaggtgtccggacctccaatggcagcatcggagaagtcgcgctggtgctggtc 363
            ||||||||||| ||||| ||||||||||| | ||| ||||| || ||||| ||||| || 
Sbjct: 1752 tttcagcgaggagtccgaacctccaatggtaacattggagatgtagcgctagtgcttgtg 1693

                                                                        
Query: 364  ccgctcctcagctgctcagacgctgctgacttgagctcaagctgctgcagctgatggacg 423
            ||||||   || || || || ||||||||||| |||||||| ||||| ||||||||||| 
Sbjct: 1692 ccgctc---agttgttctgatgctgctgactttagctcaagttgctggagctgatggacc 1636

                                                                
Query: 424  acgtgggacatccttggccgcaccgaggggacatgctgggtgcaggcgtaga 475
            || || ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 1635 acatgagacatccttggtcgcaccgaagggacatgctgggtgcaggcataga 1584
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>dbj|AK072087.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116I09, full
            insert sequence
          Length = 2041

 Score =  131 bits (66), Expect = 2e-27
 Identities = 146/172 (84%), Gaps = 3/172 (1%)
 Strand = Plus / Minus

                                                                        
Query: 304  tttcagcgaggtgtccggacctccaatggcagcatcggagaagtcgcgctggtgctggtc 363
            ||||||||||| ||||| ||||||||||| | ||| ||||| || ||||| ||||| || 
Sbjct: 1724 tttcagcgaggagtccgaacctccaatggtaacattggagatgtagcgctagtgcttgtg 1665

                                                                        
Query: 364  ccgctcctcagctgctcagacgctgctgacttgagctcaagctgctgcagctgatggacg 423
            ||||||   || || || || ||||||||||| |||||||| ||||| ||||||||||| 
Sbjct: 1664 ccgctc---agttgttctgatgctgctgactttagctcaagttgctggagctgatggacc 1608

                                                                
Query: 424  acgtgggacatccttggccgcaccgaggggacatgctgggtgcaggcgtaga 475
            || || ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 1607 acatgagacatccttggtcgcaccgaagggacatgctgggtgcaggcataga 1556
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>ref|NM_115236.3| Arabidopsis thaliana tubulin binding AT3G53760 mRNA, complete cds
          Length = 2667

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 58   gacatggtgagatctaaagtat 79
            ||||||||||||||||||||||
Sbjct: 1548 gacatggtgagatctaaagtat 1569
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>gb|BT013556.1| Lycopersicon esculentum clone 132293F, mRNA sequence
          Length = 2160

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 412  agctgatggacgacgtgggacatcct 437
            ||||||||||||||||| ||||||||
Sbjct: 1835 agctgatggacgacgtgtgacatcct 1810
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>gb|BT012412.1| Arabidopsis thaliana At3g53760 mRNA, complete cds
          Length = 2238

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 58   gacatggtgagatctaaagtat 79
            ||||||||||||||||||||||
Sbjct: 1447 gacatggtgagatctaaagtat 1468
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>gb|BT012227.1| Arabidopsis thaliana At3g53760 gene, complete cds
          Length = 2554

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 58   gacatggtgagatctaaagtat 79
            ||||||||||||||||||||||
Sbjct: 1545 gacatggtgagatctaaagtat 1566
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>emb|AL132960.2|ATF5K20 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20
          Length = 119407

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 58    gacatggtgagatctaaagtat 79
             ||||||||||||||||||||||
Sbjct: 22065 gacatggtgagatctaaagtat 22044
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>emb|BX823602.1|CNS0A7EV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS55ZH04 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2664

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 58   gacatggtgagatctaaagtat 79
            ||||||||||||||||||||||
Sbjct: 1543 gacatggtgagatctaaagtat 1564
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>gb|AC118708.4| Mus musculus chromosome 7, clone RP24-118K11, complete sequence
          Length = 212638

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 255    aatgatgataataacacagca 275
              |||||||||||||||||||||
Sbjct: 171521 aatgatgataataacacagca 171541
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>emb|AL445933.32| Human DNA sequence from clone RP11-486B10 on chromosome 1 Contains the
             EDN2 gene for endothelin 2, the 3' end of the HIVEP3 gene
             for human immunodeficiency virus type I enhancer binding
             protein 3 and a novel gene, complete sequence
          Length = 154153

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 255   aatgatgataataacacagcagcag 279
             |||||||||||||| ||||||||||
Sbjct: 90680 aatgatgataataaaacagcagcag 90704
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>emb|AL022336.1|HS78F24 Human DNA sequence from clone RP1-78F24 on chromosome 22q12.1-12.3,
             complete sequence
          Length = 145414

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 302   ggtttcagcgaggtgtccggacctc 326
             ||||||||||||||||| |||||||
Sbjct: 25456 ggtttcagcgaggtgtcaggacctc 25432
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 428     gggacatccttggccgcaccg 448
               |||||||||||||||||||||
Sbjct: 1919968 gggacatccttggccgcaccg 1919988
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>gb|AF288742.1|AF288742 Homo sapiens oxysterol binding protein 2 (OSBP2) gene, complete cds
          Length = 217292

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 302    ggtttcagcgaggtgtccggacctc 326
              ||||||||||||||||| |||||||
Sbjct: 135585 ggtttcagcgaggtgtcaggacctc 135609
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 339     cggagaagtcgcgctggtgct 359
               |||||||||||||||||||||
Sbjct: 3953145 cggagaagtcgcgctggtgct 3953165
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>emb|CR626872.8| Zebrafish DNA sequence from clone DKEY-38L22 in linkage group 7,
             complete sequence
          Length = 126802

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   ccaatggcagcatcggagaa 345
             ||||||||||||||||||||
Sbjct: 25800 ccaatggcagcatcggagaa 25781
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>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12
          Length = 329100

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 406    tgctgcagctgatggacgac 425
              ||||||||||||||||||||
Sbjct: 111315 tgctgcagctgatggacgac 111334
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>gb|AC139100.3| Homo sapiens chromosome 18, clone, complete sequence
          Length = 276546

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ttctagaactctgatggcgg 299
             ||||||||||||||||||||
Sbjct: 83769 ttctagaactctgatggcgg 83788
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>ref|XM_966293.1| PREDICTED: Tribolium castaneum similar to methyl-CpG binding domain
           protein 5 (LOC660029), mRNA
          Length = 5193

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 396 gagctcaagctgctgcagct 415
           ||||||||||||||||||||
Sbjct: 332 gagctcaagctgctgcagct 313
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>ref|XM_779962.1| PREDICTED: Strongylocentrotus purpuratus similar to Lysosome
           membrane protein II (LIMP II) (Scavenger receptor class
           B, member 2) (85 kDa lysosomal membrane
           sialoglycoprotein) (LGP85) (CD36 antigen-like 2)
           (LOC579868), mRNA
          Length = 1900

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 19  agcttctacagacactgacaatgttgct 46
           |||||||||  |||||||||||||||||
Sbjct: 241 agcttctacctacactgacaatgttgct 214



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 19 agcttctacagacactgacaatgttgct 46
          |||||||||  |||||||||||||||||
Sbjct: 90 agcttctacctacactgacaatgttgct 63
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>emb|Y11708.1|RELIPAGEN R.etli lipA gene
          Length = 2533

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 406  tgctgcagctgatggacgac 425
            ||||||||||||||||||||
Sbjct: 2177 tgctgcagctgatggacgac 2196
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>gb|AC090360.9| Homo sapiens chromosome 18, clone RP11-795F19, complete sequence
          Length = 177055

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    ttctagaactctgatggcgg 299
              ||||||||||||||||||||
Sbjct: 127430 ttctagaactctgatggcgg 127449
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 332     gcagcatcggagaagtcgcg 351
               ||||||||||||||||||||
Sbjct: 3474603 gcagcatcggagaagtcgcg 3474622
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>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence
          Length = 197615

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   tgctgcagctgatggacgac 425
             ||||||||||||||||||||
Sbjct: 60447 tgctgcagctgatggacgac 60466
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 406     tgctgcagctgatggacgac 425
               ||||||||||||||||||||
Sbjct: 2024547 tgctgcagctgatggacgac 2024566
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>gb|AC105381.2| Homo sapiens BAC clone RP11-6G22 from 2, complete sequence
          Length = 85611

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ttctacagacactgacaatg 41
             ||||||||||||||||||||
Sbjct: 47344 ttctacagacactgacaatg 47325
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>dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1003B09
          Length = 155263

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   cccgctcctcagctgctcag 382
             ||||||||||||||||||||
Sbjct: 52946 cccgctcctcagctgctcag 52965
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>dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1168H06
          Length = 185600

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   cccgctcctcagctgctcag 382
             ||||||||||||||||||||
Sbjct: 28405 cccgctcctcagctgctcag 28424
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>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5)
          Length = 896449

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 256    atgatgataataacacagcagcag 279
              ||||||||||| ||||||||||||
Sbjct: 491867 atgatgataatcacacagcagcag 491890
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 332     gcagcatcggagaagtcgcg 351
               ||||||||||||||||||||
Sbjct: 3470336 gcagcatcggagaagtcgcg 3470355
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>emb|BX284693.6| Zebrafish DNA sequence from clone DKEY-179M13 in linkage group 2,
             complete sequence
          Length = 84370

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    aagtataaatcagctggggt 93
             ||||||||||||||||||||
Sbjct: 30057 aagtataaatcagctggggt 30038
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>emb|BX537710.1|HSM805785 Homo sapiens mRNA; cDNA DKFZp686A2393 (from clone DKFZp686A2393)
          Length = 5206

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 280  ttctagaactctgatggcgg 299
            ||||||||||||||||||||
Sbjct: 2751 ttctagaactctgatggcgg 2770
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>gb|AY557374.1| Leishmania donovani isolate MHOM/ET/67/HU3 miniexon gene array
          Length = 6899

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 376  tgctcagacgctgctgactt 395
            ||||||||||||||||||||
Sbjct: 6120 tgctcagacgctgctgactt 6139


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,661,278
Number of Sequences: 3902068
Number of extensions: 3661278
Number of successful extensions: 77665
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77367
Number of HSP's gapped (non-prelim): 291
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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