ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22f05 |
|---|---|
| Clone Library Name | barley_pub |
>YEZ3_YEAST (P32656) Hypothetical 26.3 kDa protein in RAD4-CHD1 intergenic| region Length = 232 Score = 55.1 bits (131), Expect = 1e-07 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 25/142 (17%) Frame = -1 Query: 507 GVAYKISREQDKQTALEYLEVREKQ----YDEKVYLDLYTDSSPKIPEVQNMM------- 361 GV Y I E Q EYL VRE+ ++ +V+L+ + ++ E + Sbjct: 94 GVVYYIPPEH-AQEVREYLNVREQNGYTLHEVEVHLETNREHEAELGEALEQLPRHNKSG 152 Query: 360 -------VYLATTNKEANQNYLGPAPLEEMAKQIYLAEGPTGPNKEYLFKLEDALNKIGV 202 VY+ T + EA ++GP ++E AK I ++ GP+G N EYL KLE AL ++ + Sbjct: 153 KRVLLTSVYIGTIDNEA---FVGPETVDETAKVIAVSHGPSGSNYEYLAKLEQALAQMPI 209 Query: 201 V-------DQHVQDLATAVRKY 157 + D ++ L V KY Sbjct: 210 MKERGRITDHYLTALLETVNKY 231
>CHAC_ECOLI (P39163) Cation transport protein chaC| Length = 231 Score = 43.5 bits (101), Expect = 3e-04 Identities = 32/116 (27%), Positives = 52/116 (44%) Frame = -1 Query: 507 GVAYKISREQDKQTALEYLEVREKQYDEKVYLDLYTDSSPKIPEVQNMMVYLATTNKEAN 328 GVAY++ E +Q E + +++ YL + N +V++ + Sbjct: 106 GVAYRLPEETLEQ---ELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVFIMDPR---H 159 Query: 327 QNYLGPAPLEEMAKQIYLAEGPTGPNKEYLFKLEDALNKIGVVDQHVQDLATAVRK 160 Y + +A I A GP G N +YLF LE L K+G+ D + DL +V+K Sbjct: 160 PEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKK 215
>ADCY1_HUMAN (Q08828) Adenylate cyclase type 1 (EC 4.6.1.1) (Adenylate cyclase| type I) (ATP pyrophosphate-lyase 1) (Ca(2+)/calmodulin-activated adenylyl cyclase) Length = 1119 Score = 34.7 bits (78), Expect = 0.16 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Frame = +1 Query: 268 FG*VDLLGHFFQRSRTQIVLVGLLIC---GG*IYHHILDFRYFGGRICIQVKVNLLIILL 438 FG V LL F +S ++L+ IC +Y HI + F G + IQ++ L I ++ Sbjct: 623 FGLVYLL--IFPQSVVVLLLLVFCICFLVACVLYLHITRVQCFPGCLTIQIRTVLCIFIV 680 Query: 439 LSYFQILQGCLLILLP 486 + + + QGC++ LP Sbjct: 681 VLIYSVAQGCVVGCLP 696
>ADCY1_BOVIN (P19754) Adenylate cyclase type 1 (EC 4.6.1.1) (Adenylate cyclase| type I) (ATP pyrophosphate-lyase 1) (Ca(2+)/calmodulin-activated adenylyl cyclase) Length = 1134 Score = 33.5 bits (75), Expect = 0.36 Identities = 17/52 (32%), Positives = 32/52 (61%) Frame = +1 Query: 355 IYHHILDFRYFGGRICIQVKVNLLIILLLSYFQILQGCLLILLP*NFVSNSP 510 +Y HI + F G + IQ++ L I +++ + + QGC++ LP ++ S+SP Sbjct: 655 LYLHITRVQCFPGCLTIQIRTVLCIFIVVLIYSVAQGCVVGCLPWSW-SSSP 705
>ADCY1_MOUSE (O88444) Adenylate cyclase type 1 (EC 4.6.1.1) (Adenylate cyclase| type I) (ATP pyrophosphate-lyase 1) (Ca(2+)/calmodulin-activated adenylyl cyclase) Length = 1118 Score = 33.1 bits (74), Expect = 0.47 Identities = 15/51 (29%), Positives = 29/51 (56%) Frame = +1 Query: 355 IYHHILDFRYFGGRICIQVKVNLLIILLLSYFQILQGCLLILLP*NFVSNS 507 +Y HI + F G + IQ++ L + +++ + + QGC++ LP + S S Sbjct: 652 LYLHITRVQCFPGCLTIQIRTALCVFIVVLIYSVAQGCVVGCLPWAWSSQS 702
>PP11_HUMAN (P21128) Placental protein 11 precursor (EC 3.4.21.-) (PP11)| Length = 369 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = -3 Query: 217 KQNRC-CGSTCSGFGNCC---AQVCRDHLIISS*DHMKVEWI 104 K ++C C + C FGNCC +C DH + S D + E I Sbjct: 59 KHHQCHCNARCQEFGNCCKDFESLCSDHEVSHSSDAITKEEI 100
>OTC_OCEIH (Q8ET05) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)| Length = 322 Score = 30.8 bits (68), Expect = 2.3 Identities = 22/68 (32%), Positives = 33/68 (48%) Frame = -1 Query: 363 MVYLATTNKEANQNYLGPAPLEEMAKQIYLAEGPTGPNKEYLFKLEDALNKIGVVDQHVQ 184 +VY+ N + LG A M +G T PNKE L K + N+ G + + Sbjct: 168 LVYIGDGNNMTHSLMLGAAKTG-MHMVAVTPDGYT-PNKEVLTKAKSIANQHGAIIEWTS 225 Query: 183 DLATAVRK 160 D+ATAV++ Sbjct: 226 DIATAVQE 233
>KR171_HUMAN (Q9BYP8) Keratin-associated protein 17-1 (Keratin associated| protein 16.1) Length = 105 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -3 Query: 226 GCVKQNRCCGSTCSGFGNCCAQVC 155 GC + CCGS+C G G CC VC Sbjct: 74 GCCGSS-CCGSSCCGSG-CCGPVC 95
>YOL8_CAEEL (Q02335) Hypothetical protein ZK370.8 in chromosome III| Length = 569 Score = 29.6 bits (65), Expect = 5.2 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = -1 Query: 492 ISREQDKQTALEYLEVREKQYDEKVYLDLYTDSSPKI-PEVQNMMVYLATTNKEANQNYL 316 + R+ ++ AL L+ +EKQYD L+ +T K P + +V + N+ A + + Sbjct: 40 LERDLEEIKALGNLKFKEKQYDSA--LEAFTKGVEKAGPNSSDQIVAMLYQNRAACREKV 97 Query: 315 GPAPLEEMAKQIYLAEGPTGPNKEYLFKLEDALNKIG 205 G +P + + + + K YL + ALN +G Sbjct: 98 GHSPFDILNDCMAALKVDKKYTKAYL-RAAKALNDVG 133
>KR412_HUMAN (Q9BQ66) Keratin-associated protein 4-12 (Keratin-associated| protein 4.12) (Ultrahigh sulfur keratin-associated protein 4.12) Length = 201 Score = 29.3 bits (64), Expect = 6.8 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 4/23 (17%) Frame = -3 Query: 211 NRCCGSTCS----GFGNCCAQVC 155 N CCGS CS G NCC C Sbjct: 3 NSCCGSVCSDQGCGLENCCRPSC 25
>TPN1_YEAST (P53099) Vitamin B6 transporter TPN1 (Transport of pyridoxine| protein 1) Length = 579 Score = 29.3 bits (64), Expect = 6.8 Identities = 27/110 (24%), Positives = 40/110 (36%) Frame = +3 Query: 18 YIASXEGHEYIHNSQAIQTLYKNKDVSATIHSTFMWSYDEIIKWSLHTCAQQLPNPEHVD 197 YI+S + + ++ N+ + + S F Y W T + PE Sbjct: 241 YISSSDKYSFV-NAYVSKGNLDSSTRKGNWMSFFSLCYSITATWGSITADYYILFPEDTP 299 Query: 198 PQHLFCLTHPQV*TDTPY*VQLGLRLGRFAWPFLPAEQDPDSFGWPPYLW 347 +FCLT T + LGL L A + P + DS G LW Sbjct: 300 YIQIFCLTFFGTFLPTCFVGILGLLLASVAMSYKPWSVEYDSHGMGGLLW 349
>TPN1_SACPS (Q874L4) Vitamin B6 transporter TPN1 (Transport of pyridoxine| protein 1) Length = 579 Score = 29.3 bits (64), Expect = 6.8 Identities = 27/110 (24%), Positives = 40/110 (36%) Frame = +3 Query: 18 YIASXEGHEYIHNSQAIQTLYKNKDVSATIHSTFMWSYDEIIKWSLHTCAQQLPNPEHVD 197 YI+S + + ++ N+ + + S F Y W T + PE Sbjct: 241 YISSSDKYSFV-NAYVSKGNLDSSTRKGNWMSFFSLCYSITATWGSITADYYILFPEDTP 299 Query: 198 PQHLFCLTHPQV*TDTPY*VQLGLRLGRFAWPFLPAEQDPDSFGWPPYLW 347 +FCLT T + LGL L A + P + DS G LW Sbjct: 300 YIQIFCLTFFGTFLPTCFVGILGLLLASVAMSYKPWSVEYDSHGMGGLLW 349
>DMD_HUMAN (P11532) Dystrophin| Length = 3685 Score = 29.3 bits (64), Expect = 6.8 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 7/110 (6%) Frame = -1 Query: 486 REQDKQTALEYLEVREKQYDEKVYLDLYTDSSPKIPEVQNMMVYLATTNKEANQNYLGPA 307 ++ + + ++ L V + + E+ +L S + E Q+ + YL+TT KE ++ A Sbjct: 956 QQSETKLSIPQLSVTDYEIMEQRLGELQALQS-SLQEQQSGLYYLSTTVKEMSKK----A 1010 Query: 306 PLEEMAKQIYLAEGPTGPNK-------EYLFKLEDALNKIGVVDQHVQDL 178 P E K E G K E+ KLE+ +NK+ + H+Q L Sbjct: 1011 PSEISRKYQSEFEEIEGRWKKLSSQLVEHCQKLEEQMNKLRKIQNHIQTL 1060
>KRA42_HUMAN (Q9BYR5) Keratin-associated protein 4-2 (Keratin-associated protein| 4.2) (Ultrahigh sulfur keratin-associated protein 4.2) Length = 136 Score = 29.3 bits (64), Expect = 6.8 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 4/23 (17%) Frame = -3 Query: 211 NRCCGSTCS----GFGNCCAQVC 155 N CCGS CS G NCC C Sbjct: 3 NSCCGSVCSDQGCGLENCCRPSC 25
>Y478_RICPR (Q9ZD66) Hypothetical protein RP478 precursor| Length = 554 Score = 29.3 bits (64), Expect = 6.8 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = -1 Query: 456 YLEVREKQYDEKVYLDLYTDSSPKIPEVQNMMVYLATTNKEANQNYLGPAP 304 +LE +K YD++ YL ++D+ N +VY+ NK N + L P Sbjct: 322 FLEFLKKNYDKQTYLLKFSDNK-IYKNFNNELVYILNNNKPYNFSILEDRP 371
>MT13_MYTED (P80248) Metallothionein 10-III (MT-10-III)| Length = 72 Score = 28.9 bits (63), Expect = 8.9 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = -3 Query: 223 CVKQNRC-CGSTCSGFGNCCAQVCR 152 C++ N C CG+ CSG G C C+ Sbjct: 6 CIESNVCICGTGCSGEGCRCGDACK 30
>ITBX_DROME (P11584) Integrin beta-PS precursor (Position-specific antigen beta| chain) (Protein myospheroid) (Protein olfactory C) Length = 846 Score = 28.9 bits (63), Expect = 8.9 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Frame = -3 Query: 316 GSCSAGRNGQANLPSRRPNWT**GVSVQT*GCVKQNRCC-----GSTCSGFGNCCAQVCR 152 G+C GR +P WT GC + N C G CSG G C VC+ Sbjct: 620 GTCECGRC------KCKPGWT-----GSNCGCQESNDTCMPPGGGEICSGHGTCECGVCK 668 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,668,791 Number of Sequences: 219361 Number of extensions: 1900283 Number of successful extensions: 5475 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5464 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
