ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462660.1| Oryza sativa (japonica cultivar-group), predic... 387 e-104
2dbj|AK104134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 387 e-104
3dbj|AK068709.1| Oryza sativa (japonica cultivar-group) cDNA clon... 387 e-104
4gb|AY108963.1| Zea mays PCO111665 mRNA sequence 246 6e-62
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 9e-18
6emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 100 9e-18
7ref|XM_322205.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.0
8ref|XM_952151.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.0
9gb|AC147663.3| Pan troglodytes BAC clone CH251-304A22 from Y, co... 40 7.0
10gb|AC125117.4| Mus musculus BAC clone RP24-261P10 from chromosom... 40 7.0
11gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, comp... 40 7.0
12ref|XM_500637.1| Yarrowia lipolytica CLIB122, YALI0B08338g predi... 40 7.0
13emb|AL157367.15| Human DNA sequence from clone RP11-480P3 on chr... 40 7.0
14gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 7.0
15emb|BX957221.1| Methanococcus maripaludis S2 complete genome; se... 40 7.0
16gb|AC087558.13| Mus musculus strain C57BL/6J chromosome 2 clone ... 40 7.0
17gb|AC113581.3| Tetraodon nigroviridis clone GSTNA-45F12, complet... 40 7.0
18dbj|BS000588.2| Pan troglodytes chromosome Y clone:PTB-443K18, c... 40 7.0
19gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.0
20gb|AC091727.2|AC091727 Takifugu rubripes clone 250A8, complete s... 40 7.0
21gb|AF440619.1|AF440619 Homo sapiens 13q14 chronic lymphocytic le... 40 7.0
22gb|AF279660.2|AF279660 Homo sapiens CAR (RFP2) gene, complete cd... 40 7.0
23gb|AE008465.1|AE008465 Streptococcus pneumoniae R6 section 81 of... 40 7.0
24gb|AC079045.2| Homo sapiens chromosome 13 clone ctd-2302o19 map ... 40 7.0
25gb|AC016678.4|AC016678 Homo sapiens BAC clone RP11-55O11 from Y,... 40 7.0
26gb|AC175465.1| Ornithorhynchus anatinus BAC clone OABb-36D11 fro... 40 7.0
27dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, ... 40 7.0
28emb|AL845427.11| Mouse DNA sequence from clone RP23-436J19 on ch... 40 7.0
29emb|AL450169.1|CNS07EEW Genomic sequence at the putative B_CLL i... 40 7.0
30gb|AC134448.4| Mus musculus BAC clone RP24-186G11 from 3, comple... 40 7.0
31gb|AC147545.3| Mus musculus BAC clone RP23-355L20 from 14, compl... 40 7.0
32emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 7.0
33emb|AL844593.6| Mouse DNA sequence from clone RP23-227F18 on chr... 40 7.0 
>ref|XM_462660.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 564

 Score =  387 bits (195), Expect = e-104
 Identities = 324/367 (88%)
 Strand = Plus / Minus

                                                                       
Query: 152 tctgcatacttgcgcacagcagttgccaaatcctgaacatgttgatccacaacacctatt 211
           |||| |||||||||||||||| |||||| |||||| |||||| |||| ||||| ||||||
Sbjct: 545 tctggatacttgcgcacagcatttgccagatcctggacatgtggatcaacaactcctatt 486

                                                                       
Query: 212 ttgtttaacgcatcctcaagtttgaacagatactccttattaggtccagttgggccttcg 271
           ||||| || |||||||||||||||||||| ||||| || |||||||||| ||||||||| 
Sbjct: 485 ttgttcaatgcatcctcaagtttgaacaggtactctttgttaggtccagatgggccttca 426

                                                                       
Query: 272 gctaggtagatttgcttggccatttcttccagcggagcaggacccagatagttttggttg 331
           |||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 425 gctaggtaaatttgcttggccatttcttccagcggtgcaggaccaaggtagttttggttg 366

                                                                       
Query: 332 gcctccttatttgtggtggctaaatataccatcatattttggacttccggtattttgggg 391
             || ||| ||||| |||||||| |||||||||| ||||| |||  | ||| |||| || 
Sbjct: 365 ctctgcttgtttgttgtggctaagtataccatcacatttttgacggctggtgtttttggt 306

                                                                       
Query: 392 gaagaatctgtatacaagtcaaggtaaaccttctcatcatattgcttctctcttacttcc 451
           || || ||  ||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 305 gaggagtccatatacaaatcaaggtaaatcttctcatcatattgcttctctcttacttcc 246

                                                                       
Query: 452 agatactccagggctgtctgcttatcttgctcccttgaaattttgtaagcaactccccag 511
           |||| |||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct: 245 agatgctccagagctgtctgcttatcttgttccgttgaaattttgtaagcaacaccccag 186

                  
Query: 512 catgtgg 518
           |||||||
Sbjct: 185 catgtgg 179
to top
>dbj|AK104134.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-E04, full
           insert sequence
          Length = 951

 Score =  387 bits (195), Expect = e-104
 Identities = 324/367 (88%)
 Strand = Plus / Minus

                                                                       
Query: 152 tctgcatacttgcgcacagcagttgccaaatcctgaacatgttgatccacaacacctatt 211
           |||| |||||||||||||||| |||||| |||||| |||||| |||| ||||| ||||||
Sbjct: 582 tctggatacttgcgcacagcatttgccagatcctggacatgtggatcaacaactcctatt 523

                                                                       
Query: 212 ttgtttaacgcatcctcaagtttgaacagatactccttattaggtccagttgggccttcg 271
           ||||| || |||||||||||||||||||| ||||| || |||||||||| ||||||||| 
Sbjct: 522 ttgttcaatgcatcctcaagtttgaacaggtactctttgttaggtccagatgggccttca 463

                                                                       
Query: 272 gctaggtagatttgcttggccatttcttccagcggagcaggacccagatagttttggttg 331
           |||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 462 gctaggtaaatttgcttggccatttcttccagcggtgcaggaccaaggtagttttggttg 403

                                                                       
Query: 332 gcctccttatttgtggtggctaaatataccatcatattttggacttccggtattttgggg 391
             || ||| ||||| |||||||| |||||||||| ||||| |||  | ||| |||| || 
Sbjct: 402 ctctgcttgtttgttgtggctaagtataccatcacatttttgacggctggtgtttttggt 343

                                                                       
Query: 392 gaagaatctgtatacaagtcaaggtaaaccttctcatcatattgcttctctcttacttcc 451
           || || ||  ||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 342 gaggagtccatatacaaatcaaggtaaatcttctcatcatattgcttctctcttacttcc 283

                                                                       
Query: 452 agatactccagggctgtctgcttatcttgctcccttgaaattttgtaagcaactccccag 511
           |||| |||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct: 282 agatgctccagagctgtctgcttatcttgttccgttgaaattttgtaagcaacaccccag 223

                  
Query: 512 catgtgg 518
           |||||||
Sbjct: 222 catgtgg 216
to top
>dbj|AK068709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159G01, full
           insert sequence
          Length = 995

 Score =  387 bits (195), Expect = e-104
 Identities = 324/367 (88%)
 Strand = Plus / Minus

                                                                       
Query: 152 tctgcatacttgcgcacagcagttgccaaatcctgaacatgttgatccacaacacctatt 211
           |||| |||||||||||||||| |||||| |||||| |||||| |||| ||||| ||||||
Sbjct: 626 tctggatacttgcgcacagcatttgccagatcctggacatgtggatcaacaactcctatt 567

                                                                       
Query: 212 ttgtttaacgcatcctcaagtttgaacagatactccttattaggtccagttgggccttcg 271
           ||||| || |||||||||||||||||||| ||||| || |||||||||| ||||||||| 
Sbjct: 566 ttgttcaatgcatcctcaagtttgaacaggtactctttgttaggtccagatgggccttca 507

                                                                       
Query: 272 gctaggtagatttgcttggccatttcttccagcggagcaggacccagatagttttggttg 331
           |||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 506 gctaggtaaatttgcttggccatttcttccagcggtgcaggaccaaggtagttttggttg 447

                                                                       
Query: 332 gcctccttatttgtggtggctaaatataccatcatattttggacttccggtattttgggg 391
             || ||| ||||| |||||||| |||||||||| ||||| |||  | ||| |||| || 
Sbjct: 446 ctctgcttgtttgttgtggctaagtataccatcacatttttgacggctggtgtttttggt 387

                                                                       
Query: 392 gaagaatctgtatacaagtcaaggtaaaccttctcatcatattgcttctctcttacttcc 451
           || || ||  ||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 386 gaggagtccatatacaaatcaaggtaaatcttctcatcatattgcttctctcttacttcc 327

                                                                       
Query: 452 agatactccagggctgtctgcttatcttgctcccttgaaattttgtaagcaactccccag 511
           |||| |||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct: 326 agatgctccagagctgtctgcttatcttgttccgttgaaattttgtaagcaacaccccag 267

                  
Query: 512 catgtgg 518
           |||||||
Sbjct: 266 catgtgg 260
to top
>gb|AY108963.1| Zea mays PCO111665 mRNA sequence
          Length = 906

 Score =  246 bits (124), Expect = 6e-62
 Identities = 276/326 (84%), Gaps = 3/326 (0%)
 Strand = Plus / Minus

                                                                       
Query: 188 acatgttgatccacaacacctattttgtttaacgcatcctcaagtttgaacagatactcc 247
           |||||||| || ||||| |||| ||||| |||||| ||||| |||||||||| |||||| 
Sbjct: 694 acatgttggtctacaactcctaatttgtgtaacgcgtcctcgagtttgaacacatactct 635

                                                                       
Query: 248 ttattaggtccagttgggccttcggctaggtagatttgcttggccatttcttccagcgga 307
           || |||||||||| ||||||||  || ||||| |||||| ||| |||||||||||| || 
Sbjct: 634 ttgttaggtccagatgggccttgagcaaggtaaatttgcctggtcatttcttccagaggt 575

                                                                       
Query: 308 gcaggacccagatagttttggttggcctccttatttgtggtggctaaatataccatcata 367
           |||||||| ||||||||||| |||  |||||| ||  ||||||| || |||||||||| |
Sbjct: 574 gcaggaccaagatagttttgattgttctccttgttactggtggcgaagtataccatcaca 515

                                                                       
Query: 368 ttttggacttccggtattttgggggaagaatctgtatacaagtcaaggtaaaccttctca 427
           |||| |||  | |||| |||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 514 ttttcgacagctggtactttgggcgatgaatcagtatacaagtcaaggtaaaccttctca 455

                                                                       
Query: 428 tcatattgcttctctcttacttccagatactccagggctgtctgcttatcttgctccctt 487
           |||||||||||||| || ||||| ||||||||||  ||| ||| |||||||| |||| ||
Sbjct: 454 tcatattgcttctccctgacttcaagatactccaaagctatctccttatcttcctccttt 395

                                     
Query: 488 gaaattttgtaagcaactccccagca 513
              ||| |||||||||||||||||||
Sbjct: 394 ---attctgtaagcaactccccagca 372
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                            
Query: 205      acctattttgtttaacgcatcctcaagtttgaacagatactccttattaggtccagttgg 264
                |||||||||||| || |||||||||||||||||||| ||||| || |||||||||| |||
Sbjct: 22330487 acctattttgttcaatgcatcctcaagtttgaacaggtactctttgttaggtccagatgg 22330546

                                      
Query: 265      gccttcggctaggtagatttgc 286
                |||||| |||||||| ||||||
Sbjct: 22330547 gccttcagctaggtaaatttgc 22330568



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                      
Query: 402      tatacaagtcaaggtaaaccttctcatcatattgcttctctcttacttccagat 455
                ||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22331083 tatacaaatcaaggtaaatcttctcatcatattgcttctctcttacttccagat 22331136



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 457      ctccagggctgtctgcttatcttgctcccttgaaattttgtaagcaactcccca 510
                |||||| ||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct: 22331530 ctccagagctgtctgcttatcttgttccgttgaaattttgtaagcaacacccca 22331583



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                            
Query: 286      cttggccatttcttccagcggagcaggacccagatagttttggttggcctccttatttgt 345
                ||||||||||||||||||||| |||||||| || ||||||||||||  || ||| |||||
Sbjct: 22330652 cttggccatttcttccagcggtgcaggaccaaggtagttttggttgctctgcttgtttgt 22330711

                         
Query: 346      ggtggctaa 354
                 ||||||||
Sbjct: 22330712 tgtggctaa 22330720



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 152      tctgcatacttgcgcacagcagttgccaaatcctgaacatgttgatccacaac 204
                |||| |||||||||||||||| |||||| |||||| |||||| |||| |||||
Sbjct: 22330356 tctggatacttgcgcacagcatttgccagatcctggacatgtggatcaacaac 22330408
to top
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                         
Query: 205   acctattttgtttaacgcatcctcaagtttgaacagatactccttattaggtccagttgg 264
             |||||||||||| || |||||||||||||||||||| ||||| || |||||||||| |||
Sbjct: 81391 acctattttgttcaatgcatcctcaagtttgaacaggtactctttgttaggtccagatgg 81450

                                   
Query: 265   gccttcggctaggtagatttgc 286
             |||||| |||||||| ||||||
Sbjct: 81451 gccttcagctaggtaaatttgc 81472



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                   
Query: 402   tatacaagtcaaggtaaaccttctcatcatattgcttctctcttacttccagat 455
             ||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 81987 tatacaaatcaaggtaaatcttctcatcatattgcttctctcttacttccagat 82040



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                   
Query: 457   ctccagggctgtctgcttatcttgctcccttgaaattttgtaagcaactcccca 510
             |||||| ||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct: 82434 ctccagagctgtctgcttatcttgttccgttgaaattttgtaagcaacacccca 82487



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                         
Query: 286   cttggccatttcttccagcggagcaggacccagatagttttggttggcctccttatttgt 345
             ||||||||||||||||||||| |||||||| || ||||||||||||  || ||| |||||
Sbjct: 81556 cttggccatttcttccagcggtgcaggaccaaggtagttttggttgctctgcttgtttgt 81615

                      
Query: 346   ggtggctaa 354
              ||||||||
Sbjct: 81616 tgtggctaa 81624



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 152   tctgcatacttgcgcacagcagttgccaaatcctgaacatgttgatccacaac 204
             |||| |||||||||||||||| |||||| |||||| |||||| |||| |||||
Sbjct: 81260 tctggatacttgcgcacagcatttgccagatcctggacatgtggatcaacaac 81312
to top
>ref|XM_322205.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial
            mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   ccgcaacaatccattccacc 116
            ||||||||||||||||||||
Sbjct: 3086 ccgcaacaatccattccacc 3105
to top
>ref|XM_952151.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial
            mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   ccgcaacaatccattccacc 116
            ||||||||||||||||||||
Sbjct: 3086 ccgcaacaatccattccacc 3105
to top
>gb|AC147663.3| Pan troglodytes BAC clone CH251-304A22 from Y, complete sequence
          Length = 162854

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   ttgatccacaacacctattttgtt 216
             ||||||||||| ||||||||||||
Sbjct: 90028 ttgatccacaatacctattttgtt 90051
to top
>gb|AC125117.4| Mus musculus BAC clone RP24-261P10 from chromosome 14, complete
             sequence
          Length = 165313

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 452   agatactccagggctgtctg 471
             ||||||||||||||||||||
Sbjct: 96083 agatactccagggctgtctg 96102
to top
>gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, complete sequence
          Length = 163480

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   ttgatccacaacacctattttgtt 216
             ||||||||||| ||||||||||||
Sbjct: 41739 ttgatccacaatacctattttgtt 41762
to top
>ref|XM_500637.1| Yarrowia lipolytica CLIB122, YALI0B08338g predicted mRNA
          Length = 14091

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 279  agatttgcttggccatttcttcca 302
            |||||||| |||||||||||||||
Sbjct: 1637 agatttgcgtggccatttcttcca 1660
to top
>emb|AL157367.15| Human DNA sequence from clone RP11-480P3 on chromosome 13, complete
             sequence
          Length = 85778

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   atgatgagattatcaaatgg 149
             ||||||||||||||||||||
Sbjct: 42638 atgatgagattatcaaatgg 42619
to top
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 282     tttgcttggccatttcttcc 301
               ||||||||||||||||||||
Sbjct: 1290779 tttgcttggccatttcttcc 1290798
to top
>emb|BX957221.1| Methanococcus maripaludis S2 complete genome; segment 3/5
          Length = 348230

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 210    ttttgtttaacgcatcctcaagtt 233
              |||||||||||||||| |||||||
Sbjct: 334741 ttttgtttaacgcatcatcaagtt 334718
to top
>gb|AC087558.13| Mus musculus strain C57BL/6J chromosome 2 clone rp23-282p18, complete
             sequence
          Length = 217766

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   tttgcttggccatttcttcc 301
             ||||||||||||||||||||
Sbjct: 90597 tttgcttggccatttcttcc 90578
to top
>gb|AC113581.3| Tetraodon nigroviridis clone GSTNA-45F12, complete sequence
          Length = 115385

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   catttcttccagcggagcag 311
             ||||||||||||||||||||
Sbjct: 67589 catttcttccagcggagcag 67570
to top
>dbj|BS000588.2| Pan troglodytes chromosome Y clone:PTB-443K18, complete sequence
          Length = 151892

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 193   ttgatccacaacacctattttgtt 216
             ||||||||||| ||||||||||||
Sbjct: 28697 ttgatccacaatacctattttgtt 28674
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 193      ttgatccacaacacctattttgtt 216
                ||||||||||| ||||||||||||
Sbjct: 17193220 ttgatccacaatacctattttgtt 17193243
to top
>gb|AC091727.2|AC091727 Takifugu rubripes clone 250A8, complete sequence
          Length = 58366

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   catttcttccagcggagcag 311
             ||||||||||||||||||||
Sbjct: 21280 catttcttccagcggagcag 21261
to top
>gb|AF440619.1|AF440619 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section
              1 of 2
          Length = 350000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    atgatgagattatcaaatgg 149
              ||||||||||||||||||||
Sbjct: 254642 atgatgagattatcaaatgg 254623
to top
>gb|AF279660.2|AF279660 Homo sapiens CAR (RFP2) gene, complete cds; DLEU2 and DLEU1 genes,
              complete sequence; and RPL18 and p48/Hip pseudogenes,
              complete sequence
          Length = 347503

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    atgatgagattatcaaatgg 149
              ||||||||||||||||||||
Sbjct: 206920 atgatgagattatcaaatgg 206901
to top
>gb|AE008465.1|AE008465 Streptococcus pneumoniae R6 section 81 of 184 of the complete genome
          Length = 14205

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  ttgcttggccatttcttcca 302
            ||||||||||||||||||||
Sbjct: 8533 ttgcttggccatttcttcca 8514
to top
>gb|AC079045.2| Homo sapiens chromosome 13 clone ctd-2302o19 map 13q14, complete
             sequence
          Length = 110620

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   atgatgagattatcaaatgg 149
             ||||||||||||||||||||
Sbjct: 76430 atgatgagattatcaaatgg 76449
to top
>gb|AC016678.4|AC016678 Homo sapiens BAC clone RP11-55O11 from Y, complete sequence
          Length = 142982

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 193   ttgatccacaacacctattttgtt 216
             ||||||||||| ||||||||||||
Sbjct: 76959 ttgatccacaatacctattttgtt 76936
to top
>gb|AC175465.1| Ornithorhynchus anatinus BAC clone OABb-36D11 from chromosome
            unknown, complete sequence
          Length = 128273

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 385  tttgggggaagaatctgtat 404
            ||||||||||||||||||||
Sbjct: 6659 tttgggggaagaatctgtat 6678
to top
>dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, complete sequences
          Length = 163477

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 193    ttgatccacaacacctattttgtt 216
              ||||||||||| ||||||||||||
Sbjct: 121739 ttgatccacaatacctattttgtt 121716
to top
>emb|AL845427.11| Mouse DNA sequence from clone RP23-436J19 on chromosome 2, complete
             sequence
          Length = 168207

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   tttgcttggccatttcttcc 301
             ||||||||||||||||||||
Sbjct: 90602 tttgcttggccatttcttcc 90583
to top
>emb|AL450169.1|CNS07EEW Genomic sequence at the putative B_CLL involved tumor suppressor gene
             locus on human chromosome 13q14.3 clone PAC 4E7,BAC
             93D9,PAC 63H3 of library LLNL from chromosome 13 of Homo
             sapiens (human)
          Length = 279647

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   atgatgagattatcaaatgg 149
             ||||||||||||||||||||
Sbjct: 92080 atgatgagattatcaaatgg 92061
to top
>gb|AC134448.4| Mus musculus BAC clone RP24-186G11 from 3, complete sequence
          Length = 160223

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   ttccaccttcatgtggtcct 129
             ||||||||||||||||||||
Sbjct: 77171 ttccaccttcatgtggtcct 77190
to top
>gb|AC147545.3| Mus musculus BAC clone RP23-355L20 from 14, complete sequence
          Length = 211446

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    agatactccagggctgtctg 471
              ||||||||||||||||||||
Sbjct: 148413 agatactccagggctgtctg 148394
to top
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 279     agatttgcttggccatttcttcca 302
               |||||||| |||||||||||||||
Sbjct: 1144494 agatttgcgtggccatttcttcca 1144517
to top
>emb|AL844593.6| Mouse DNA sequence from clone RP23-227F18 on chromosome 2, complete
             sequence
          Length = 86923

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    tatacaagaataaagatgtttccg 99
             |||| |||||||||||||||||||
Sbjct: 32806 tataaaagaataaagatgtttccg 32783


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,113,056
Number of Sequences: 3902068
Number of extensions: 5113056
Number of successful extensions: 101559
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101401
Number of HSP's gapped (non-prelim): 154
length of query: 519
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 496
effective length of database: 17,143,297,704
effective search space: 8503075661184
effective search space used: 8503075661184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top