ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ315794.1|HVU315794 Hordeum vulgare mRNA for Ribosomal prot... 502 e-139
2gb|AF542971.1| Triticum aestivum ribosomal protein S7 mRNA, part... 311 7e-82
3gb|AY290724.1| Triticum aestivum ribosomal protein S7-like mRNA,... 311 7e-82
4gb|AY846832.1| Triticum aestivum ribosomal protein S7 mRNA, comp... 76 7e-11
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 4e-06
6gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 60 4e-06
7gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 60 4e-06
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
9dbj|AK122143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
10dbj|AK059192.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
11gb|BT016582.1| Zea mays clone Contig415 mRNA sequence 58 2e-05
12gb|AY103554.1| Zea mays PCO154340 mRNA sequence 58 2e-05
13dbj|AK061276.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
14gb|BT017481.1| Zea mays clone EL01N0409H01.c mRNA sequence 50 0.004
15ref|XM_651851.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 42 1.0
16gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-24... 42 1.0
17dbj|AP005120.2| Homo sapiens genomic DNA, chromosome 18p clone:R... 42 1.0
18gb|AC113068.9| Mus musculus chromosome 1, clone RP23-269F19, com... 40 4.1
19ref|XM_721576.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.1
20emb|AL391812.7| Human DNA sequence from clone RP13-94I22 on chro... 40 4.1
21gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 o... 40 4.1
22gb|AC040917.6| Homo sapiens chromosome 8, clone RP11-1M21, compl... 40 4.1
23gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome 40 4.1
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
25gb|AC069506.14| Homo sapiens 3 BAC RP11-321G3 (Roswell Park Canc... 40 4.1
26gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome 40 4.1
27dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, compl... 40 4.1
28dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
29dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
30gb|AF207953.5| Homo sapiens chromosome 8 clone CTA-389B map q21.... 40 4.1
31emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chr... 40 4.1 
>emb|AJ315794.1|HVU315794 Hordeum vulgare mRNA for Ribosomal protein S7 (rps7 gene)
          Length = 852

 Score =  502 bits (253), Expect = e-139
 Identities = 265/268 (98%), Gaps = 1/268 (0%)
 Strand = Plus / Minus

                                                                       
Query: 42  gcaacaagataaccgagcagacgttcataatttaaatgctcaaaactttaacattgttca 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gcaacaagataaccgagcagacgttcataatttaaatgctcaaaactttaacattgttca 793

                                                                       
Query: 102 cgttcattgccatctccatcaaactttcctaaacccaggttgttaacaaaactatgtttc 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cgttcattgccatctccatcaaactttcctaaacccaggttgttaacaaaactatgtttc 733

                                                                       
Query: 162 tggaatacattgatagcacaactaactgaagcatcaaccaaaacatttggatacgaagat 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tggaatacattgatagcacaactaactgaagcatcaaccaaaacatttggatacgaagat 673

                                                                       
Query: 222 atgaaatggagacattcaaggcattggtcttcatgcggtttcggccacagggtactcaaa 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 atgaaatggagacattcaaggcattggtcttcatgcggtttcggccacagggtactcaaa 613

                                       
Query: 282 gcacaacgtctttcccanaaagcctgcg 309
           | ||||||||||||||  ||||||||||
Sbjct: 612 g-acaacgtctttcccgcaaagcctgcg 586
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>gb|AF542971.1| Triticum aestivum ribosomal protein S7 mRNA, partial cds
          Length = 392

 Score =  311 bits (157), Expect = 7e-82
 Identities = 237/260 (91%), Gaps = 3/260 (1%)
 Strand = Plus / Minus

                                                                       
Query: 51  taaccgagcagacgttcataatttaaatgctcaaaactttaacattgttcacgttcattg 110
           |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taacggagcataggttcataatttaaatgctcaaaactttaacattgttcacgttcattg 313

                                                                       
Query: 111 ccatctccatcaaactttcctaaacccaggttgttaacaaaactatgtttctggaataca 170
           |||||| |||||||| ||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct: 312 ccatcttcatcaaac-ttcctaaccccagatagttaacaaaactatgtttctggaataca 254

                                                                       
Query: 171 ttgatagcacaactaactgaagcatcaaccaaaacatttggat-acgaagatatgaaatg 229
           |||||||||||||||||  |  | ||||||||||||||||||| |  |||||||||||||
Sbjct: 253 ttgatagcacaactaaccaagacctcaaccaaaacatttggatcagaaagatatgaaatg 194

                                                                       
Query: 230 gagacattcaaggcattggtcttcatgcggtttcggccacagggtactcaaagcacaacg 289
           |||||||||||||||| | |||||| |||||||| | |||||||||||||||| ||||||
Sbjct: 193 gagacattcaaggcatggatcttcaggcggtttcagtcacagggtactcaaag-acaacg 135

                               
Query: 290 tctttcccanaaagcctgcg 309
           ||||||||| ||||||||||
Sbjct: 134 tctttcccacaaagcctgcg 115
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>gb|AY290724.1| Triticum aestivum ribosomal protein S7-like mRNA, partial sequence
          Length = 393

 Score =  311 bits (157), Expect = 7e-82
 Identities = 237/260 (91%), Gaps = 3/260 (1%)
 Strand = Plus / Minus

                                                                       
Query: 51  taaccgagcagacgttcataatttaaatgctcaaaactttaacattgttcacgttcattg 110
           |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 taacggagcataggttcataatttaaatgctcaaaactttaacattgttcacgttcattg 314

                                                                       
Query: 111 ccatctccatcaaactttcctaaacccaggttgttaacaaaactatgtttctggaataca 170
           |||||| |||||||| ||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct: 313 ccatcttcatcaaac-ttcctaaccccagatagttaacaaaactatgtttctggaataca 255

                                                                       
Query: 171 ttgatagcacaactaactgaagcatcaaccaaaacatttggat-acgaagatatgaaatg 229
           |||||||||||||||||  |  | ||||||||||||||||||| |  |||||||||||||
Sbjct: 254 ttgatagcacaactaaccaagacctcaaccaaaacatttggatcagaaagatatgaaatg 195

                                                                       
Query: 230 gagacattcaaggcattggtcttcatgcggtttcggccacagggtactcaaagcacaacg 289
           |||||||||||||||| | |||||| |||||||| | |||||||||||||||| ||||||
Sbjct: 194 gagacattcaaggcatggatcttcaggcggtttcagtcacagggtactcaaag-acaacg 136

                               
Query: 290 tctttcccanaaagcctgcg 309
           ||||||||| ||||||||||
Sbjct: 135 tctttcccacaaagcctgcg 116
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>gb|AY846832.1| Triticum aestivum ribosomal protein S7 mRNA, complete cds
          Length = 600

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/61 (91%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                       
Query: 249 tcttcatgcggtttcggccacagggtactcaaagcacaacgtctttcccanaaagcctgc 308
           |||||| |||||||| | |||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 599 tcttcaggcggtttcagtcacagggtactcaaag-acaacgtctttcccacaaagcctgc 541

            
Query: 309 g 309
           |
Sbjct: 540 g 540
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 68       ataatttaaatgctcaaaactttaacattgttca 101
                ||||||||||||| ||||||||||||||||||||
Sbjct: 10367634 ataatttaaatgcccaaaactttaacattgttca 10367601



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                              
Query: 68       ataatttaaatgctcaaaactttaacattg 97
                ||||||||||||| ||||||||||||||||
Sbjct: 10371889 ataatttaaatgcccaaaactttaacattg 10371860



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 52/61 (85%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                            
Query: 249      tcttcatgcggtttcggccacagggtactcaaagcacaacgtctttcccanaaagcctgc 308
                |||||| || ||||| | || |||||||||||||  |||| ||||||||| |||||||||
Sbjct: 10367502 tcttcaagcagtttcagtcatagggtactcaaag-gcaacatctttcccacaaagcctgc 10367444

                 
Query: 309      g 309
                |
Sbjct: 10367443 g 10367443
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                               
Query: 68    ataatttaaatgctcaaaactttaacattgttca 101
             ||||||||||||| ||||||||||||||||||||
Sbjct: 24187 ataatttaaatgcccaaaactttaacattgttca 24154



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 68    ataatttaaatgctcaaaactttaacattg 97
             ||||||||||||| ||||||||||||||||
Sbjct: 28442 ataatttaaatgcccaaaactttaacattg 28413



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 52/61 (85%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                         
Query: 249   tcttcatgcggtttcggccacagggtactcaaagcacaacgtctttcccanaaagcctgc 308
             |||||| || ||||| | || |||||||||||||  |||| ||||||||| |||||||||
Sbjct: 24055 tcttcaagcagtttcagtcatagggtactcaaag-gcaacatctttcccacaaagcctgc 23997

              
Query: 309   g 309
             |
Sbjct: 23996 g 23996
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone
             OSJNBb0036D03, from chromosome 3, complete sequence
          Length = 125800

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                               
Query: 68    ataatttaaatgctcaaaactttaacattgttca 101
             ||||||||||||| ||||||||||||||||||||
Sbjct: 81100 ataatttaaatgcccaaaactttaacattgttca 81067



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 68    ataatttaaatgctcaaaactttaacattg 97
             ||||||||||||| ||||||||||||||||
Sbjct: 85355 ataatttaaatgcccaaaactttaacattg 85326



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 52/61 (85%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                         
Query: 249   tcttcatgcggtttcggccacagggtactcaaagcacaacgtctttcccanaaagcctgc 308
             |||||| || ||||| | || |||||||||||||  |||| ||||||||| |||||||||
Sbjct: 80968 tcttcaagcagtttcagtcatagggtactcaaag-gcaacatctttcccacaaagcctgc 80910

              
Query: 309   g 309
             |
Sbjct: 80909 g 80909
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 68       ataatttaaatgctcaaaactttaacattgttca 101
                ||||||||||||| ||||||||||||||||||||
Sbjct: 10365735 ataatttaaatgcccaaaactttaacattgttca 10365702



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                              
Query: 68       ataatttaaatgctcaaaactttaacattg 97
                ||||||||||||| ||||||||||||||||
Sbjct: 10369990 ataatttaaatgcccaaaactttaacattg 10369961



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 52/61 (85%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                            
Query: 249      tcttcatgcggtttcggccacagggtactcaaagcacaacgtctttcccanaaagcctgc 308
                |||||| || ||||| | || |||||||||||||  |||| ||||||||| |||||||||
Sbjct: 10365603 tcttcaagcagtttcagtcatagggtactcaaag-gcaacatctttcccacaaagcctgc 10365545

                 
Query: 309      g 309
                |
Sbjct: 10365544 g 10365544
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>dbj|AK122143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136J20, full
           insert sequence
          Length = 966

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 68  ataatttaaatgctcaaaactttaacattgttca 101
           ||||||||||||| ||||||||||||||||||||
Sbjct: 786 ataatttaaatgcccaaaactttaacattgttca 753



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 52/61 (85%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                       
Query: 249 tcttcatgcggtttcggccacagggtactcaaagcacaacgtctttcccanaaagcctgc 308
           |||||| || ||||| | || |||||||||||||  |||| ||||||||| |||||||||
Sbjct: 654 tcttcaagcagtttcagtcatagggtactcaaag-gcaacatctttcccacaaagcctgc 596

            
Query: 309 g 309
           |
Sbjct: 595 g 595
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>dbj|AK059192.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H09, full
           insert sequence
          Length = 830

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 68  ataatttaaatgctcaaaactttaacattgttca 101
           ||||||||||||| ||||||||||||||||||||
Sbjct: 785 ataatttaaatgcccaaaactttaacattgttca 752



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 52/61 (85%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                       
Query: 249 tcttcatgcggtttcggccacagggtactcaaagcacaacgtctttcccanaaagcctgc 308
           |||||| || ||||| | || |||||||||||||  |||| ||||||||| |||||||||
Sbjct: 653 tcttcaagcagtttcagtcatagggtactcaaag-gcaacatctttcccacaaagcctgc 595

            
Query: 309 g 309
           |
Sbjct: 594 g 594
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>gb|BT016582.1| Zea mays clone Contig415 mRNA sequence
          Length = 907

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 69  taatttaaatgctcaaaactttaacattgttcacgttcattgcca 113
           ||||||||||||||||||| |||||||||||||||| || |||||
Sbjct: 852 taatttaaatgctcaaaac-ttaacattgttcacgtccactgcca 809
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>gb|AY103554.1| Zea mays PCO154340 mRNA sequence
          Length = 1075

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 69  taatttaaatgctcaaaactttaacattgttcacgttcattgcca 113
           ||||||||||||||||||| |||||||||||||||| || |||||
Sbjct: 892 taatttaaatgctcaaaac-ttaacattgttcacgtccactgcca 849
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>dbj|AK061276.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E11, full
           insert sequence
          Length = 811

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 68  ataatttaaatgctcaaaactttaacattg 97
           ||||||||||||| ||||||||||||||||
Sbjct: 707 ataatttaaatgcccaaaactttaacattg 678
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>gb|BT017481.1| Zea mays clone EL01N0409H01.c mRNA sequence
          Length = 840

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 41/45 (91%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 69  taatttaaatgctcaaaactttaacattgttcacgttcattgcca 113
           |||||||| |||||||||| |||||||||||||||| || |||||
Sbjct: 815 taatttaattgctcaaaac-ttaacattgttcacgtccactgcca 772
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>ref|XM_651851.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (6.t00008)
            partial mRNA
          Length = 8574

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 174  atagcacaactaactgaagcatcaa 198
            |||| ||||||||||||||||||||
Sbjct: 3728 ataggacaactaactgaagcatcaa 3704
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>gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-245A17, complete sequence
          Length = 180573

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 66     tcataatttaaatgctcaaaa 86
              |||||||||||||||||||||
Sbjct: 109493 tcataatttaaatgctcaaaa 109473
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>dbj|AP005120.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-513M1, complete
             sequences
          Length = 125561

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 66    tcataatttaaatgctcaaaa 86
             |||||||||||||||||||||
Sbjct: 85452 tcataatttaaatgctcaaaa 85472
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>gb|AC113068.9| Mus musculus chromosome 1, clone RP23-269F19, complete sequence
          Length = 188836

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aacaagtattacacaatacc 25
             ||||||||||||||||||||
Sbjct: 70017 aacaagtattacacaatacc 69998
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>ref|XM_721576.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06084)
           partial mRNA
          Length = 1296

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 67  cataatttaaatgctcaaaa 86
           ||||||||||||||||||||
Sbjct: 760 cataatttaaatgctcaaaa 741
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>emb|AL391812.7| Human DNA sequence from clone RP13-94I22 on chromosome 10 Contains part
             of the MYO3A gene for myosin IIIA, complete sequence
          Length = 61212

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   ttcattgccatctccatcaa 123
             ||||||||||||||||||||
Sbjct: 34333 ttcattgccatctccatcaa 34314
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>gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 of the complete genome
          Length = 300923

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 68     ataatttaaatgctcaaaacttta 91
              ||||||||||||| ||||||||||
Sbjct: 287383 ataatttaaatgcacaaaacttta 287360
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>gb|AC040917.6| Homo sapiens chromosome 8, clone RP11-1M21, complete sequence
          Length = 158031

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   aaactatgtttctggaatacattg 173
             |||||||||| |||||||||||||
Sbjct: 73158 aaactatgttgctggaatacattg 73181
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>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome
          Length = 1229853

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 68     ataatttaaatgctcaaaacttta 91
              ||||||||||||| ||||||||||
Sbjct: 551314 ataatttaaatgcacaaaacttta 551337
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 68       ataatttaaatgctcaaaactttaacattgtt 99
                |||||| |||||| ||||||||||| ||||||
Sbjct: 13024106 ataattcaaatgcccaaaactttaatattgtt 13024137
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>gb|AC069506.14| Homo sapiens 3 BAC RP11-321G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 131274

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    cgttcataatttaaatgctc 82
             ||||||||||||||||||||
Sbjct: 90584 cgttcataatttaaatgctc 90603
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>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome
          Length = 1230230

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 68     ataatttaaatgctcaaaacttta 91
              ||||||||||||| ||||||||||
Sbjct: 289969 ataatttaaatgcacaaaacttta 289946
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>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence
          Length = 1226565

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 68     ataatttaaatgctcaaaacttta 91
              ||||||||||||| ||||||||||
Sbjct: 289591 ataatttaaatgcacaaaacttta 289568
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>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0688H12
          Length = 139279

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 68     ataatttaaatgctcaaaactttaacattgtt 99
              |||||| |||||| ||||||||||| ||||||
Sbjct: 133749 ataattcaaatgcccaaaactttaatattgtt 133780
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>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           PAC clone:P0476C12
          Length = 157570

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 68  ataatttaaatgctcaaaactttaacattgtt 99
           |||||| |||||| ||||||||||| ||||||
Sbjct: 683 ataattcaaatgcccaaaactttaatattgtt 714
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>gb|AF207953.5| Homo sapiens chromosome 8 clone CTA-389B map q21.13, complete sequence
          Length = 112288

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   aaactatgtttctggaatacattg 173
             |||||||||| |||||||||||||
Sbjct: 86867 aaactatgttgctggaatacattg 86890
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>emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chromosome 4, complete
             sequence
          Length = 141401

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    tttaacattgttcacgttca 107
             ||||||||||||||||||||
Sbjct: 44763 tttaacattgttcacgttca 44744


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,684,517
Number of Sequences: 3902068
Number of extensions: 2684517
Number of successful extensions: 52516
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52403
Number of HSP's gapped (non-prelim): 101
length of query: 311
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 289
effective length of database: 17,147,199,772
effective search space: 4955540734108
effective search space used: 4955540734108
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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