ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21p18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, r... 42 0.36
2gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 ... 42 0.36
3gb|AC004245.1|AC004245 Drosophila melanogaster (P1 DS03239 (D138... 42 0.36
4gb|AC102343.8| Mus musculus chromosome 3, clone RP23-254H18, com... 38 5.6
5gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome... 38 5.6
6gb|AC163023.4| Mus musculus chromosome 3, clone RP24-247E19, com... 38 5.6
7ref|XM_949609.1| Theileria annulata strain Ankara hypothetical p... 38 5.6
8emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 o... 38 5.6
9emb|AJ419849.1|CAU419849 Carassius auratus il-1b-2 gene for inte... 38 5.6
10emb|CR388044.5| Zebrafish DNA sequence from clone CH211-174L12 i... 38 5.6
11emb|CR382340.7| Zebrafish DNA sequence from clone DKEY-151G10 in... 38 5.6
12emb|BX511123.10| Zebrafish DNA sequence from clone DKEY-201I6 in... 38 5.6
13gb|AC021506.5|AC021506 Homo sapiens chromosome 18, clone RP11-17... 38 5.6
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.6
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.6
16dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.6
17emb|BX119921.9| Zebrafish DNA sequence from clone CH211-198N10 i... 38 5.6
18dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.6
19emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in l... 38 5.6

>gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, region 21E-21F, BAC clone
             BACR30G21, complete sequence
          Length = 168370

 Score = 42.1 bits (21), Expect = 0.36
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     gttaaaataatattacccatt 29
             |||||||||||||||||||||
Sbjct: 55539 gttaaaataatattacccatt 55559



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>gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 of 83 of the complete
             sequence
          Length = 308447

 Score = 42.1 bits (21), Expect = 0.36
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     gttaaaataatattacccatt 29
             |||||||||||||||||||||
Sbjct: 92662 gttaaaataatattacccatt 92682



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>gb|AC004245.1|AC004245 Drosophila melanogaster (P1 DS03239 (D138)) DNA sequence, complete
             sequence
          Length = 79454

 Score = 42.1 bits (21), Expect = 0.36
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     gttaaaataatattacccatt 29
             |||||||||||||||||||||
Sbjct: 60016 gttaaaataatattacccatt 60036



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>gb|AC102343.8| Mus musculus chromosome 3, clone RP23-254H18, complete sequence
          Length = 220876

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     ctatggttaaaataatatt 22
             |||||||||||||||||||
Sbjct: 72871 ctatggttaaaataatatt 72853



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>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07,
             complete sequence
          Length = 114135

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 2     aactatggttaaaataatattac 24
             |||||| ||||||||||||||||
Sbjct: 64757 aactattgttaaaataatattac 64779



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>gb|AC163023.4| Mus musculus chromosome 3, clone RP24-247E19, complete sequence
          Length = 166206

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 4      ctatggttaaaataatatt 22
              |||||||||||||||||||
Sbjct: 117800 ctatggttaaaataatatt 117782



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>ref|XM_949609.1| Theileria annulata strain Ankara hypothetical protein (TA18870)
            partial mRNA
          Length = 3045

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 61   tagagaggaaatgtctaat 79
            |||||||||||||||||||
Sbjct: 1246 tagagaggaaatgtctaat 1228



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>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2
              Contains a novel gene, the 5' end of the PLAC3 gene for
              placenta-specific 3 (PLAC3) and a protein tyrosine
              phosphatase type IVA (member 1) (PTP4A1) pseudogene,
              complete sequence
          Length = 168835

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      actatggttaaaataatat 21
              |||||||||||||||||||
Sbjct: 126395 actatggttaaaataatat 126377



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>emb|AJ419849.1|CAU419849 Carassius auratus il-1b-2 gene for interleukin-1 beta-2, exons 1-5
          Length = 7245

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 4    ctatggttaaaataatatt 22
            |||||||||||||||||||
Sbjct: 4312 ctatggttaaaataatatt 4330



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>emb|CR388044.5| Zebrafish DNA sequence from clone CH211-174L12 in linkage group 24,
            complete sequence
          Length = 49249

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 97   tttaattccaaccttgctc 115
            |||||||||||||||||||
Sbjct: 9895 tttaattccaaccttgctc 9913



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>emb|CR382340.7| Zebrafish DNA sequence from clone DKEY-151G10 in linkage group 23,
             complete sequence
          Length = 158509

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    tttaattccaaccttgctc 115
             |||||||||||||||||||
Sbjct: 90479 tttaattccaaccttgctc 90497



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>emb|BX511123.10| Zebrafish DNA sequence from clone DKEY-201I6 in linkage group 16,
             complete sequence
          Length = 159464

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     tatggttaaaataatatta 23
             |||||||||||||||||||
Sbjct: 56569 tatggttaaaataatatta 56587



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>gb|AC021506.5|AC021506 Homo sapiens chromosome 18, clone RP11-173L6, complete sequence
          Length = 155863

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 60    atagagaggaaatgtctaatgga 82
             ||||||| |||||||||||||||
Sbjct: 36050 atagagaagaaatgtctaatgga 36072



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      aactatggttaaaataata 20
              |||||||||||||||||||
Sbjct: 801354 aactatggttaaaataata 801372



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 2       aactatggttaaaataatattac 24
               |||||| ||||||||||||||||
Sbjct: 5857993 aactattgttaaaataatattac 5858015



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>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1513_F02
          Length = 126845

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      aactatggttaaaataata 20
              |||||||||||||||||||
Sbjct: 121161 aactatggttaaaataata 121179



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>emb|BX119921.9| Zebrafish DNA sequence from clone CH211-198N10 in linkage group 16,
             complete sequence
          Length = 126091

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     tatggttaaaataatatta 23
             |||||||||||||||||||
Sbjct: 17985 tatggttaaaataatatta 17967



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>dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
           BAC clone:OJ1138_B05
          Length = 113982

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 2   aactatggttaaaataata 20
           |||||||||||||||||||
Sbjct: 110 aactatggttaaaataata 128



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>emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in linkage group 7,
             complete sequence
          Length = 217582

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    tttaattccaaccttgctc 115
             |||||||||||||||||||
Sbjct: 14642 tttaattccaaccttgctc 14624


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,097,039
Number of Sequences: 3902068
Number of extensions: 1097039
Number of successful extensions: 76582
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76517
Number of HSP's gapped (non-prelim): 65
length of query: 122
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 101
effective length of database: 17,151,101,840
effective search space: 1732261285840
effective search space used: 1732261285840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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