Clone Name | rbasd21p18 |
---|---|
Clone Library Name | barley_pub |
>gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, region 21E-21F, BAC clone BACR30G21, complete sequence Length = 168370 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gttaaaataatattacccatt 29 ||||||||||||||||||||| Sbjct: 55539 gttaaaataatattacccatt 55559
>gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 of 83 of the complete sequence Length = 308447 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gttaaaataatattacccatt 29 ||||||||||||||||||||| Sbjct: 92662 gttaaaataatattacccatt 92682
>gb|AC004245.1|AC004245 Drosophila melanogaster (P1 DS03239 (D138)) DNA sequence, complete sequence Length = 79454 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gttaaaataatattacccatt 29 ||||||||||||||||||||| Sbjct: 60016 gttaaaataatattacccatt 60036
>gb|AC102343.8| Mus musculus chromosome 3, clone RP23-254H18, complete sequence Length = 220876 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 ctatggttaaaataatatt 22 ||||||||||||||||||| Sbjct: 72871 ctatggttaaaataatatt 72853
>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07, complete sequence Length = 114135 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 2 aactatggttaaaataatattac 24 |||||| |||||||||||||||| Sbjct: 64757 aactattgttaaaataatattac 64779
>gb|AC163023.4| Mus musculus chromosome 3, clone RP24-247E19, complete sequence Length = 166206 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 ctatggttaaaataatatt 22 ||||||||||||||||||| Sbjct: 117800 ctatggttaaaataatatt 117782
>ref|XM_949609.1| Theileria annulata strain Ankara hypothetical protein (TA18870) partial mRNA Length = 3045 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 tagagaggaaatgtctaat 79 ||||||||||||||||||| Sbjct: 1246 tagagaggaaatgtctaat 1228
>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2 Contains a novel gene, the 5' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and a protein tyrosine phosphatase type IVA (member 1) (PTP4A1) pseudogene, complete sequence Length = 168835 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 actatggttaaaataatat 21 ||||||||||||||||||| Sbjct: 126395 actatggttaaaataatat 126377
>emb|AJ419849.1|CAU419849 Carassius auratus il-1b-2 gene for interleukin-1 beta-2, exons 1-5 Length = 7245 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 ctatggttaaaataatatt 22 ||||||||||||||||||| Sbjct: 4312 ctatggttaaaataatatt 4330
>emb|CR388044.5| Zebrafish DNA sequence from clone CH211-174L12 in linkage group 24, complete sequence Length = 49249 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 tttaattccaaccttgctc 115 ||||||||||||||||||| Sbjct: 9895 tttaattccaaccttgctc 9913
>emb|CR382340.7| Zebrafish DNA sequence from clone DKEY-151G10 in linkage group 23, complete sequence Length = 158509 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 tttaattccaaccttgctc 115 ||||||||||||||||||| Sbjct: 90479 tttaattccaaccttgctc 90497
>emb|BX511123.10| Zebrafish DNA sequence from clone DKEY-201I6 in linkage group 16, complete sequence Length = 159464 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 tatggttaaaataatatta 23 ||||||||||||||||||| Sbjct: 56569 tatggttaaaataatatta 56587
>gb|AC021506.5|AC021506 Homo sapiens chromosome 18, clone RP11-173L6, complete sequence Length = 155863 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 60 atagagaggaaatgtctaatgga 82 ||||||| ||||||||||||||| Sbjct: 36050 atagagaagaaatgtctaatgga 36072
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aactatggttaaaataata 20 ||||||||||||||||||| Sbjct: 801354 aactatggttaaaataata 801372
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 2 aactatggttaaaataatattac 24 |||||| |||||||||||||||| Sbjct: 5857993 aactattgttaaaataatattac 5858015
>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1513_F02 Length = 126845 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aactatggttaaaataata 20 ||||||||||||||||||| Sbjct: 121161 aactatggttaaaataata 121179
>emb|BX119921.9| Zebrafish DNA sequence from clone CH211-198N10 in linkage group 16, complete sequence Length = 126091 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 tatggttaaaataatatta 23 ||||||||||||||||||| Sbjct: 17985 tatggttaaaataatatta 17967
>dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1138_B05 Length = 113982 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aactatggttaaaataata 20 ||||||||||||||||||| Sbjct: 110 aactatggttaaaataata 128
>emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in linkage group 7, complete sequence Length = 217582 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 tttaattccaaccttgctc 115 ||||||||||||||||||| Sbjct: 14642 tttaattccaaccttgctc 14624 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,097,039 Number of Sequences: 3902068 Number of extensions: 1097039 Number of successful extensions: 76582 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76517 Number of HSP's gapped (non-prelim): 65 length of query: 122 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 101 effective length of database: 17,151,101,840 effective search space: 1732261285840 effective search space used: 1732261285840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)