ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22e17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MURC_PARUW (Q6MBS8) UDP-N-acetylmuramate--L-alanine ligase (EC 6... 30 4.5
2CYSJ_BLOFL (Q7VQH2) Sulfite reductase [NADPH] flavoprotein alpha... 30 5.9
3TYRP1_AMBME (P55027) 5,6-dihydroxyindole-2-carboxylic acid oxida... 30 5.9
4Y3064_ERWCT (Q6D2N1) UPF0209 protein ECA3064 29 7.8
5YAY7_SCHPO (Q10215) Hypothetical protein C4H3.07c in chromosome I 29 7.8

>MURC_PARUW (Q6MBS8) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 454

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -2

Query: 438 RATLLVLATRESQKRSVTGSSRGATPSTPTVRTLATAHAITLCSRGGI 295
           RA LL L TR+ +  +VTG+    T S+    TL  A+  +  + GGI
Sbjct: 91  RAELLALLTRQKKSLAVTGTHGKTTTSSLLATTLLEANCDSSFAVGGI 138



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>CYSJ_BLOFL (Q7VQH2) Sulfite reductase [NADPH] flavoprotein alpha-component (EC|
           1.8.1.2) (SIR-FP)
          Length = 610

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 215 IDRRRWVQVCGLPGVHHLRYDMIGQGLARKSGKAL 111
           ++R++      L  VHHL +D+ G GL  + G AL
Sbjct: 251 LNRQKITSCNSLKDVHHLEFDISGSGLCYQPGDAL 285



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>TYRP1_AMBME (P55027) 5,6-dihydroxyindole-2-carboxylic acid oxidase precursor|
           (EC 1.14.18.-) (DHICA oxidase) (Tyrosinase-related
           protein 1) (TRP-1) (TRP1)
          Length = 534

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 372 GATPSTPTVRTLATAHAITLCSRGGIFNTIISFDTSS*CAENPMSGYNQ-KGRY 214
           G   + P V+ L     + LC   G+F+T   +  SS    N + GY++  G+Y
Sbjct: 316 GGNVARPMVQRLPEPQDVALCLEVGLFDTPPFYSNSSESFRNTVEGYSEPSGKY 369



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>Y3064_ERWCT (Q6D2N1) UPF0209 protein ECA3064|
          Length = 675

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
 Frame = -3

Query: 476 CPLPEREAGYMVLEQLSSSWQQ-------ENRRSGR*LVLREGQRQVHRLCV-------- 342
           CP     A   + +Q   S Q        E   SG  L L  GQ+  H + V        
Sbjct: 411 CPAELTAAALKLAQQNGLSVQMSTAVSALEKTDSGWALTLSAGQQVNHAVVVLANGHHIT 470

Query: 341 --PLRRHMPSPCVQGEASLIPSYPL 273
             P  RH+P   V+G+ S IP+ P+
Sbjct: 471 DWPQTRHLPGYAVRGQVSHIPTNPV 495



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>YAY7_SCHPO (Q10215) Hypothetical protein C4H3.07c in chromosome I|
          Length = 171

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 553 LRNEMLNAVKGFSASGQNGVFINSCFAHCQSERQDTWYSSNSPRLGNKRIAEAVGDW 383
           L +E  +   GFS      VF ++   +C+S R+ T  S    +LG K I    G W
Sbjct: 109 LSDEEFSKTYGFSKP----VFEDNVVVYCRSGRRSTTASDILTKLGYKNIGNYTGSW 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,828,617
Number of Sequences: 219361
Number of extensions: 1903879
Number of successful extensions: 5351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5351
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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