ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22e17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016667.1| Zea mays clone Contig500 mRNA sequence 212 9e-52
2gb|AY107261.1| Zea mays PCO091441 mRNA sequence 212 9e-52
3ref|NM_193124.1| Oryza sativa (japonica cultivar-group), mRNA 98 4e-17
4ref|XM_506495.1| PREDICTED Oryza sativa (japonica cultivar-group... 98 4e-17
5dbj|AK065122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 4e-17
6dbj|AK060807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
8dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
9dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
10gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete s... 46 0.12
11gb|AC142145.3| Mus musculus BAC clone RP24-69D13 from chromosome... 44 0.48
12emb|CR352233.9| Zebrafish DNA sequence from clone CH211-193J5 in... 44 0.48
13dbj|AK079493.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 44 0.48
14gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Can... 42 1.9
15gb|AC024757.1| Caenorhabditis elegans cosmid Y37E11AL, complete ... 40 7.5
16ref|NM_197657.1| Oryza sativa (japonica cultivar-group) putative... 40 7.5
17gb|AC154107.3| Mus musculus BAC clone RP23-67L1 from chromosome ... 40 7.5
18gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.5
19ref|XM_572519.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 7.5
20gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome... 40 7.5
21gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosom... 40 7.5
22gb|AC022884.12| Homo sapiens chromosome 18, clone RP11-449D8, co... 40 7.5
23emb|CR536602.5| Zebrafish DNA sequence from clone bGZ-160O4, com... 40 7.5
24gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 40 7.5
25ref|NM_060898.1| Caenorhabditis elegans C17H1.8 (C17H1.8) mRNA, ... 40 7.5
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
27dbj|AK064698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
28gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
29emb|Z92777.1|CEC17H1 Caenorhabditis elegans Cosmid C17H1, comple... 40 7.5 
>gb|BT016667.1| Zea mays clone Contig500 mRNA sequence
          Length = 1741

 Score =  212 bits (107), Expect = 9e-52
 Identities = 203/235 (86%)
 Strand = Plus / Minus

                                                                        
Query: 307  tgaacacaaggtgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgt 366
            ||||||||||||||||||| ||||| ||||||||||| |  ||||| ||||||||||| |
Sbjct: 1342 tgaacacaaggtgatggcaagtgccatcgcaagggtatgggcagtctgtgtacttggcat 1283

                                                                        
Query: 367  tgcccctctcgaagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgag 426
            | |||||||||||||||||||| ||||| || || |||||| ||||||| |||||||| |
Sbjct: 1282 tccccctctcgaagaaccagtccccgacagcgtcagcgattttcttgttaccaagacgtg 1223

                                                                        
Query: 427  gagagttgctcgagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagt 486
            | |||||| ||| |||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 1222 gcgagttgttcgcgtaccaagtatcctgtctctcgctctggcaatgagcaaaacatgagt 1163

                                                                   
Query: 487  tgataaataccccattctgccctgacgcggagaaacccttcacggcgttaagcat 541
            |||| || |  ||||| |||| ||| || ||||||||| ||||||| | ||||||
Sbjct: 1162 tgatgaacagaccattttgccttgatgcagagaaacccctcacggcatcaagcat 1108
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>gb|AY107261.1| Zea mays PCO091441 mRNA sequence
          Length = 1409

 Score =  212 bits (107), Expect = 9e-52
 Identities = 203/235 (86%)
 Strand = Plus / Minus

                                                                        
Query: 307  tgaacacaaggtgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgt 366
            ||||||||||||||||||| ||||| ||||||||||| |  ||||| ||||||||||| |
Sbjct: 1036 tgaacacaaggtgatggcaagtgccatcgcaagggtatgggcagtctgtgtacttggcat 977

                                                                        
Query: 367  tgcccctctcgaagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgag 426
            | |||||||||||||||||||| ||||| || || |||||| ||||||| |||||||| |
Sbjct: 976  tccccctctcgaagaaccagtccccgacagcgtcagcgattttcttgttaccaagacgtg 917

                                                                        
Query: 427  gagagttgctcgagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagt 486
            | |||||| ||| |||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 916  gcgagttgttcgcgtaccaagtatcctgtctctcgctctggcaatgagcaaaacatgagt 857

                                                                   
Query: 487  tgataaataccccattctgccctgacgcggagaaacccttcacggcgttaagcat 541
            |||| || |  ||||| |||| ||| || ||||||||| ||||||| | ||||||
Sbjct: 856  tgatgaacagaccattttgccttgatgcagagaaacccctcacggcatcaagcat 802
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>ref|NM_193124.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1221

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 187/233 (80%)
 Strand = Plus / Minus

                                                                        
Query: 318  tgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgttgcccctctcg 377
            |||||||| || || || |||||||| |||||||| |||||||| ||||   |||| |||
Sbjct: 1196 tgatggcaggtaccatcacaagggtatgcacagtctgtgtacttcgcgtctgccctatcg 1137

                                                                        
Query: 378  aagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgaggagagttgctc 437
            || |||||||| || || ||||| || ||||||||||| || ||||||||||| |  |  
Sbjct: 1136 aaaaaccagtcgcctactgcttcagcaattctcttgttaccgagacgaggagaatcccct 1077

                                                                        
Query: 438  gagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacc 497
            | ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  
Sbjct: 1076 gcgtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaaga 1017

                                                                 
Query: 498  ccattctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 550
            || ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 1016 ccgttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 964
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>ref|XM_506495.1| PREDICTED Oryza sativa (japonica cultivar-group), P0455H11.118-1 mRNA
          Length = 1744

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 187/233 (80%)
 Strand = Plus / Minus

                                                                        
Query: 318  tgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgttgcccctctcg 377
            |||||||| || || || |||||||| |||||||| |||||||| ||||   |||| |||
Sbjct: 1334 tgatggcaggtaccatcacaagggtatgcacagtctgtgtacttcgcgtctgccctatcg 1275

                                                                        
Query: 378  aagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgaggagagttgctc 437
            || |||||||| || || ||||| || ||||||||||| || ||||||||||| |  |  
Sbjct: 1274 aaaaaccagtcgcctactgcttcagcaattctcttgttaccgagacgaggagaatcccct 1215

                                                                        
Query: 438  gagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacc 497
            | ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  
Sbjct: 1214 gcgtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaaga 1155

                                                                 
Query: 498  ccattctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 550
            || ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 1154 ccgttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 1102
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>dbj|AK065122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O22, full
            insert sequence
          Length = 1744

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 187/233 (80%)
 Strand = Plus / Minus

                                                                        
Query: 318  tgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgttgcccctctcg 377
            |||||||| || || || |||||||| |||||||| |||||||| ||||   |||| |||
Sbjct: 1334 tgatggcaggtaccatcacaagggtatgcacagtctgtgtacttcgcgtctgccctatcg 1275

                                                                        
Query: 378  aagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgaggagagttgctc 437
            || |||||||| || || ||||| || ||||||||||| || ||||||||||| |  |  
Sbjct: 1274 aaaaaccagtcgcctactgcttcagcaattctcttgttaccgagacgaggagaatcccct 1215

                                                                        
Query: 438  gagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacc 497
            | ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  
Sbjct: 1214 gcgtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaaga 1155

                                                                 
Query: 498  ccattctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 550
            || ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 1154 ccgttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 1102
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>dbj|AK060807.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G03, full
            insert sequence
          Length = 1466

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 186/233 (79%)
 Strand = Plus / Minus

                                                                        
Query: 318  tgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgttgcccctctcg 377
            |||||||| || || || |||||||| |||||||| |||||||| ||||   |||| |||
Sbjct: 1071 tgatggcaggtaccatcacaagggtatgcacagtctgtgtacttcgcgtctgccctatcg 1012

                                                                        
Query: 378  aagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgaggagagttgctc 437
            || |||||||| || || ||||| || ||||||||||| || ||||||||||| |  |  
Sbjct: 1011 aaaaaccagtcgcctactgcttcagcaattctcttgttaccgagacgaggagaatcccct 952

                                                                        
Query: 438  gagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacc 497
            | ||||| ||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  
Sbjct: 951  gcgtaccgtgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaaga 892

                                                                 
Query: 498  ccattctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 550
            || ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 891  ccgttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 839
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                            
Query: 440      gtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacccc 499
                ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  ||
Sbjct: 26290093 gtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaagacc 26290034

                                                                   
Query: 500      attctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 550
                 ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 26290033 gttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 26289983
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>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455H11
          Length = 101607

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                         
Query: 440   gtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacccc 499
             ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  ||
Sbjct: 64721 gtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaagacc 64662

                                                                
Query: 500   attctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 550
              ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 64661 gttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 64611
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>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1332_C12
          Length = 67349

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 440  gtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacccc 499
            ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  ||
Sbjct: 9671 gtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaagacc 9612

                                                               
Query: 500  attctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 550
             ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 9611 gttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 9561
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>gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete sequence
          Length = 129414

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 465   tggcaatgggcaaaacatgagttgataaatacccc 499
             |||||||||||||||||||| || ||||| |||||
Sbjct: 89597 tggcaatgggcaaaacatgaatttataaacacccc 89563
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>gb|AC142145.3| Mus musculus BAC clone RP24-69D13 from chromosome 8, complete sequence
          Length = 169014

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 141   ctgccctatcatatcatatctc 162
             ||||||||||||||||||||||
Sbjct: 84096 ctgccctatcatatcatatctc 84117
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>emb|CR352233.9| Zebrafish DNA sequence from clone CH211-193J5 in linkage group 13,
             complete sequence
          Length = 149899

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 382   accagtcaccgaccgcttctgcgatt 407
             |||||| |||||||||||||||||||
Sbjct: 74910 accagttaccgaccgcttctgcgatt 74935
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>dbj|AK079493.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130059I02 product:unclassifiable, full
            insert sequence
          Length = 5143

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 141  ctgccctatcatatcatatctc 162
            ||||||||||||||||||||||
Sbjct: 4301 ctgccctatcatatcatatctc 4322
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>gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179085

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 273   caaaggatatgatggtattaa 293
             |||||||||||||||||||||
Sbjct: 28071 caaaggatatgatggtattaa 28091
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>gb|AC024757.1| Caenorhabditis elegans cosmid Y37E11AL, complete sequence
          Length = 68130

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   acttgcacccatcttcttct 209
             ||||||||||||||||||||
Sbjct: 24890 acttgcacccatcttcttct 24871
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>ref|NM_197657.1| Oryza sativa (japonica cultivar-group) putative pectin acetylesterase
            (OSJNBa0015J15.27), mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 442  accatgtatcctgcctctcgctctggcaatgggcaaaaca 481
            ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 1027 accatgtttcctgcagctcactctggcaatgtgcaaaaca 988
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>gb|AC154107.3| Mus musculus BAC clone RP23-67L1 from chromosome 8, complete sequence
          Length = 246658

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tatcatatcatatctcaggt 166
             ||||||||||||||||||||
Sbjct: 94286 tatcatatcatatctcaggt 94267
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
             sequence
          Length = 1194300

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   aaacttgcacccatcttctt 207
             ||||||||||||||||||||
Sbjct: 85591 aaacttgcacccatcttctt 85572
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>ref|XM_572519.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNH03550) partial mRNA
          Length = 4866

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  aaacttgcacccatcttctt 207
            ||||||||||||||||||||
Sbjct: 3055 aaacttgcacccatcttctt 3074
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>gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome 13, complete sequence
          Length = 157531

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    aattggcaatggaaagaatc 83
             ||||||||||||||||||||
Sbjct: 54849 aattggcaatggaaagaatc 54830
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>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence
          Length = 212949

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    tatcatatcatatctcaggt 166
              ||||||||||||||||||||
Sbjct: 208268 tatcatatcatatctcaggt 208249
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>gb|AC022884.12| Homo sapiens chromosome 18, clone RP11-449D8, complete sequence
          Length = 195139

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   tgtatcctgcctctcgctct 465
             ||||||||||||||||||||
Sbjct: 53508 tgtatcctgcctctcgctct 53489
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>emb|CR536602.5| Zebrafish DNA sequence from clone bGZ-160O4, complete sequence
          Length = 85135

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    atacgtgaaactaaaataac 107
             ||||||||||||||||||||
Sbjct: 47573 atacgtgaaactaaaataac 47592
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
              sequence
          Length = 144798

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 442    accatgtatcctgcctctcgctctggcaatgggcaaaaca 481
              ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 129486 accatgtttcctgcagctcactctggcaatgtgcaaaaca 129447
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>ref|NM_060898.1| Caenorhabditis elegans C17H1.8 (C17H1.8) mRNA, complete cds
          Length = 1419

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 272  tcaaaggatatgatggtattaaag 295
            ||||||||||||||||||| ||||
Sbjct: 1112 tcaaaggatatgatggtatgaaag 1135



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 272 tcaaaggatatgatggtattaaag 295
           ||||||||||||||||||| ||||
Sbjct: 608 tcaaaggatatgatggtatgaaag 631
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 442      accatgtatcctgcctctcgctctggcaatgggcaaaaca 481
                ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 21076220 accatgtttcctgcagctcactctggcaatgtgcaaaaca 21076259
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>dbj|AK064698.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G02, full
            insert sequence
          Length = 1807

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 442  accatgtatcctgcctctcgctctggcaatgggcaaaaca 481
            ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 1405 accatgtttcctgcagctcactctggcaatgtgcaaaaca 1366
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 442      accatgtatcctgcctctcgctctggcaatgggcaaaaca 481
                ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 21087484 accatgtttcctgcagctcactctggcaatgtgcaaaaca 21087523
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>emb|Z92777.1|CEC17H1 Caenorhabditis elegans Cosmid C17H1, complete sequence
          Length = 37261

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 272   tcaaaggatatgatggtattaaag 295
             ||||||||||||||||||| ||||
Sbjct: 26517 tcaaaggatatgatggtatgaaag 26494



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 272   tcaaaggatatgatggtattaaag 295
             ||||||||||||||||||| ||||
Sbjct: 22223 tcaaaggatatgatggtatgaaag 22200


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,329,592
Number of Sequences: 3902068
Number of extensions: 4329592
Number of successful extensions: 73527
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73428
Number of HSP's gapped (non-prelim): 95
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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