ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22e14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ315794.1|HVU315794 Hordeum vulgare mRNA for Ribosomal prot... 551 e-154
2gb|AF542971.1| Triticum aestivum ribosomal protein S7 mRNA, part... 345 5e-92
3gb|AY290724.1| Triticum aestivum ribosomal protein S7-like mRNA,... 345 5e-92
4gb|AY846832.1| Triticum aestivum ribosomal protein S7 mRNA, comp... 109 6e-21
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 2e-08
6gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
7gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 68 2e-08
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
9dbj|AK122143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
10dbj|AK059192.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
11dbj|AK061276.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
12ref|XM_465276.1| Oryza sativa (japonica cultivar-group), mRNA 64 3e-07
13gb|BT016582.1| Zea mays clone Contig415 mRNA sequence 64 3e-07
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
15dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
16dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
17gb|AY103554.1| Zea mays PCO154340 mRNA sequence 64 3e-07
18gb|BT017481.1| Zea mays clone EL01N0409H01.c mRNA sequence 58 2e-05
19gb|AF118149.1|AF118149 Secale cereale ribosomal protein S7 mRNA,... 46 0.071
20ref|XM_651851.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 42 1.1
21emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2 42 1.1
22gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-24... 42 1.1
23dbj|AK114478.1| Ciona intestinalis cDNA, clone:cieg003k19, full ... 42 1.1
24dbj|AP005120.2| Homo sapiens genomic DNA, chromosome 18p clone:R... 42 1.1
25ref|XM_447213.1| Candida glabrata CBS138, CAGL0H09526g partial mRNA 40 4.4
26ref|XM_721576.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
27emb|AL391812.7| Human DNA sequence from clone RP13-94I22 on chro... 40 4.4
28gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 o... 40 4.4
29emb|CR380954.1| Candida glabrata strain CBS138 chromosome H comp... 40 4.4
30gb|AC040917.6| Homo sapiens chromosome 8, clone RP11-1M21, compl... 40 4.4
31gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome 40 4.4
32gb|AC069506.14| Homo sapiens 3 BAC RP11-321G3 (Roswell Park Canc... 40 4.4
33gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome 40 4.4
34dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, compl... 40 4.4
35gb|AF056316.1|AF056316 Avicennia marina 40S ribosome protein S7 ... 40 4.4
36gb|AF098519.1|AF098519 Avicennia marina unknown mRNA 40 4.4
37gb|AF207953.5| Homo sapiens chromosome 8 clone CTA-389B map q21.... 40 4.4
38emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chr... 40 4.4 
>emb|AJ315794.1|HVU315794 Hordeum vulgare mRNA for Ribosomal protein S7 (rps7 gene)
          Length = 852

 Score =  551 bits (278), Expect = e-154
 Identities = 278/278 (100%)
 Strand = Plus / Minus

                                                                       
Query: 52  gcaacaagataaccgagcagacgttcataatttaaatgctcaaaactttaacattgttca 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gcaacaagataaccgagcagacgttcataatttaaatgctcaaaactttaacattgttca 793

                                                                       
Query: 112 cgttcattgccatctccatcaaactttcctaaacccaggttgttaacaaaactatgtttc 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cgttcattgccatctccatcaaactttcctaaacccaggttgttaacaaaactatgtttc 733

                                                                       
Query: 172 tggaatacattgatagcacaactaactgaagcatcaaccaaaacatttggatacgaagat 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tggaatacattgatagcacaactaactgaagcatcaaccaaaacatttggatacgaagat 673

                                                                       
Query: 232 atgaaatggagacattcaaggcattggtcttcatgcggtttcggccacagggtactcaaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 atgaaatggagacattcaaggcattggtcttcatgcggtttcggccacagggtactcaaa 613

                                                 
Query: 292 gacaacgtctttcccgcaaagcctgcggtagactgcag 329
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gacaacgtctttcccgcaaagcctgcggtagactgcag 575
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>gb|AF542971.1| Triticum aestivum ribosomal protein S7 mRNA, partial cds
          Length = 392

 Score =  345 bits (174), Expect = 5e-92
 Identities = 248/270 (91%), Gaps = 2/270 (0%)
 Strand = Plus / Minus

                                                                       
Query: 61  taaccgagcagacgttcataatttaaatgctcaaaactttaacattgttcacgttcattg 120
           |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taacggagcataggttcataatttaaatgctcaaaactttaacattgttcacgttcattg 313

                                                                       
Query: 121 ccatctccatcaaactttcctaaacccaggttgttaacaaaactatgtttctggaataca 180
           |||||| |||||||||| ||||| ||||| | ||||||||||||||||||||||||||||
Sbjct: 312 ccatcttcatcaaactt-cctaaccccagatagttaacaaaactatgtttctggaataca 254

                                                                       
Query: 181 ttgatagcacaactaactgaagcatcaaccaaaacatttggatacgaa-gatatgaaatg 239
           |||||||||||||||||  |  | |||||||||||||||||||  ||| |||||||||||
Sbjct: 253 ttgatagcacaactaaccaagacctcaaccaaaacatttggatcagaaagatatgaaatg 194

                                                                       
Query: 240 gagacattcaaggcattggtcttcatgcggtttcggccacagggtactcaaagacaacgt 299
           |||||||||||||||| | |||||| |||||||| | |||||||||||||||||||||||
Sbjct: 193 gagacattcaaggcatggatcttcaggcggtttcagtcacagggtactcaaagacaacgt 134

                                         
Query: 300 ctttcccgcaaagcctgcggtagactgcag 329
           ||||||| ||||||||||||||||||||||
Sbjct: 133 ctttcccacaaagcctgcggtagactgcag 104
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>gb|AY290724.1| Triticum aestivum ribosomal protein S7-like mRNA, partial sequence
          Length = 393

 Score =  345 bits (174), Expect = 5e-92
 Identities = 248/270 (91%), Gaps = 2/270 (0%)
 Strand = Plus / Minus

                                                                       
Query: 61  taaccgagcagacgttcataatttaaatgctcaaaactttaacattgttcacgttcattg 120
           |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 taacggagcataggttcataatttaaatgctcaaaactttaacattgttcacgttcattg 314

                                                                       
Query: 121 ccatctccatcaaactttcctaaacccaggttgttaacaaaactatgtttctggaataca 180
           |||||| |||||||||| ||||| ||||| | ||||||||||||||||||||||||||||
Sbjct: 313 ccatcttcatcaaactt-cctaaccccagatagttaacaaaactatgtttctggaataca 255

                                                                       
Query: 181 ttgatagcacaactaactgaagcatcaaccaaaacatttggatacgaa-gatatgaaatg 239
           |||||||||||||||||  |  | |||||||||||||||||||  ||| |||||||||||
Sbjct: 254 ttgatagcacaactaaccaagacctcaaccaaaacatttggatcagaaagatatgaaatg 195

                                                                       
Query: 240 gagacattcaaggcattggtcttcatgcggtttcggccacagggtactcaaagacaacgt 299
           |||||||||||||||| | |||||| |||||||| | |||||||||||||||||||||||
Sbjct: 194 gagacattcaaggcatggatcttcaggcggtttcagtcacagggtactcaaagacaacgt 135

                                         
Query: 300 ctttcccgcaaagcctgcggtagactgcag 329
           ||||||| ||||||||||||||||||||||
Sbjct: 134 ctttcccacaaagcctgcggtagactgcag 105
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>gb|AY846832.1| Triticum aestivum ribosomal protein S7 mRNA, complete cds
          Length = 600

 Score =  109 bits (55), Expect = 6e-21
 Identities = 67/71 (94%)
 Strand = Plus / Minus

                                                                       
Query: 259 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
           |||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 599 tcttcaggcggtttcagtcacagggtactcaaagacaacgtctttcccacaaagcctgcg 540

                      
Query: 319 gtagactgcag 329
           |||||||||||
Sbjct: 539 gtagactgcag 529
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 259      tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
                |||||| || ||||| | || ||||||||||||| |||| |||||||| |||||||||||
Sbjct: 10367502 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 10367443

                      
Query: 319      gtagac 324
                ||||||
Sbjct: 10367442 gtagac 10367437



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                            
Query: 259      tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
                |||||| || ||||| | || ||||||||| ||| |||| |||||||| |||||||||||
Sbjct: 10371758 tcttcaagcagtttcagtcatagggtactcgaaggcaacatctttcccacaaagcctgcg 10371699

                         
Query: 319      gtagactgc 327
                |||||||||
Sbjct: 10371698 gtagactgc 10371690



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 78       ataatttaaatgctcaaaactttaacattgttca 111
                ||||||||||||| ||||||||||||||||||||
Sbjct: 10367634 ataatttaaatgcccaaaactttaacattgttca 10367601



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                              
Query: 78       ataatttaaatgctcaaaactttaacattg 107
                ||||||||||||| ||||||||||||||||
Sbjct: 10371889 ataatttaaatgcccaaaactttaacattg 10371860
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 259   tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
             |||||| || ||||| | || ||||||||||||| |||| |||||||| |||||||||||
Sbjct: 24055 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 23996

                   
Query: 319   gtagac 324
             ||||||
Sbjct: 23995 gtagac 23990



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                         
Query: 259   tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
             |||||| || ||||| | || ||||||||| ||| |||| |||||||| |||||||||||
Sbjct: 28311 tcttcaagcagtttcagtcatagggtactcgaaggcaacatctttcccacaaagcctgcg 28252

                      
Query: 319   gtagactgc 327
             |||||||||
Sbjct: 28251 gtagactgc 28243



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                               
Query: 78    ataatttaaatgctcaaaactttaacattgttca 111
             ||||||||||||| ||||||||||||||||||||
Sbjct: 24187 ataatttaaatgcccaaaactttaacattgttca 24154



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 78    ataatttaaatgctcaaaactttaacattg 107
             ||||||||||||| ||||||||||||||||
Sbjct: 28442 ataatttaaatgcccaaaactttaacattg 28413
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone
             OSJNBb0036D03, from chromosome 3, complete sequence
          Length = 125800

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 259   tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
             |||||| || ||||| | || ||||||||||||| |||| |||||||| |||||||||||
Sbjct: 80968 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 80909

                   
Query: 319   gtagac 324
             ||||||
Sbjct: 80908 gtagac 80903



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                         
Query: 259   tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
             |||||| || ||||| | || ||||||||| ||| |||| |||||||| |||||||||||
Sbjct: 85224 tcttcaagcagtttcagtcatagggtactcgaaggcaacatctttcccacaaagcctgcg 85165

                      
Query: 319   gtagactgc 327
             |||||||||
Sbjct: 85164 gtagactgc 85156



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                               
Query: 78    ataatttaaatgctcaaaactttaacattgttca 111
             ||||||||||||| ||||||||||||||||||||
Sbjct: 81100 ataatttaaatgcccaaaactttaacattgttca 81067



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 78    ataatttaaatgctcaaaactttaacattg 107
             ||||||||||||| ||||||||||||||||
Sbjct: 85355 ataatttaaatgcccaaaactttaacattg 85326
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 259      tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
                |||||| || ||||| | || ||||||||||||| |||| |||||||| |||||||||||
Sbjct: 10365603 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 10365544

                      
Query: 319      gtagac 324
                ||||||
Sbjct: 10365543 gtagac 10365538



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                            
Query: 259      tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
                |||||| || ||||| | || ||||||||| ||| |||| |||||||| |||||||||||
Sbjct: 10369859 tcttcaagcagtttcagtcatagggtactcgaaggcaacatctttcccacaaagcctgcg 10369800

                         
Query: 319      gtagactgc 327
                |||||||||
Sbjct: 10369799 gtagactgc 10369791



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 78       ataatttaaatgctcaaaactttaacattgttca 111
                ||||||||||||| ||||||||||||||||||||
Sbjct: 10365735 ataatttaaatgcccaaaactttaacattgttca 10365702



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                              
Query: 78       ataatttaaatgctcaaaactttaacattg 107
                ||||||||||||| ||||||||||||||||
Sbjct: 10369990 ataatttaaatgcccaaaactttaacattg 10369961
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>dbj|AK122143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136J20, full
           insert sequence
          Length = 966

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 259 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
           |||||| || ||||| | || ||||||||||||| |||| |||||||| |||||||||||
Sbjct: 654 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 595

                 
Query: 319 gtagac 324
           ||||||
Sbjct: 594 gtagac 589



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 78  ataatttaaatgctcaaaactttaacattgttca 111
           ||||||||||||| ||||||||||||||||||||
Sbjct: 786 ataatttaaatgcccaaaactttaacattgttca 753
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>dbj|AK059192.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H09, full
           insert sequence
          Length = 830

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 259 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
           |||||| || ||||| | || ||||||||||||| |||| |||||||| |||||||||||
Sbjct: 653 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 594

                 
Query: 319 gtagac 324
           ||||||
Sbjct: 593 gtagac 588



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 78  ataatttaaatgctcaaaactttaacattgttca 111
           ||||||||||||| ||||||||||||||||||||
Sbjct: 785 ataatttaaatgcccaaaactttaacattgttca 752
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>dbj|AK061276.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E11, full
           insert sequence
          Length = 811

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                       
Query: 259 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
           |||||| || ||||| | || ||||||||| ||| |||| |||||||| |||||||||||
Sbjct: 576 tcttcaagcagtttcagtcatagggtactcgaaggcaacatctttcccacaaagcctgcg 517

                    
Query: 319 gtagactgc 327
           |||||||||
Sbjct: 516 gtagactgc 508



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 78  ataatttaaatgctcaaaactttaacattg 107
           ||||||||||||| ||||||||||||||||
Sbjct: 707 ataatttaaatgcccaaaactttaacattg 678
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>ref|XM_465276.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 339

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 281 gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgca 328
           |||||||||||| |||| |||||||| |||||||| ||||||||||||
Sbjct: 320 gggtactcaaaggcaacatctttcccacaaagcctacggtagactgca 273
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>gb|BT016582.1| Zea mays clone Contig415 mRNA sequence
          Length = 907

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 270 tttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcag 329
           |||||| || ||||||||||||||| || |||||||| || |||||||||||||| ||||
Sbjct: 676 tttcggtcatagggtactcaaagaccacatctttcccacacagcctgcggtagaccgcag 617



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 79  taatttaaatgctcaaaactttaacattgttcacgttcattgcca 123
           ||||||||||||||||||| |||||||||||||||| || |||||
Sbjct: 852 taatttaaatgctcaaaac-ttaacattgttcacgtccactgcca 809
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 281      gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgca 328
                |||||||||||| |||| |||||||| |||||||| ||||||||||||
Sbjct: 13024240 gggtactcaaaggcaacatctttcccacaaagcctacggtagactgca 13024287



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 78       ataatttaaatgctcaaaactttaacattgtt 109
                |||||| |||||| ||||||||||| ||||||
Sbjct: 13024106 ataattcaaatgcccaaaactttaatattgtt 13024137
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>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0688H12
          Length = 139279

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                              
Query: 281    gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgca 328
              |||||||||||| |||| |||||||| |||||||| ||||||||||||
Sbjct: 133883 gggtactcaaaggcaacatctttcccacaaagcctacggtagactgca 133930



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 78     ataatttaaatgctcaaaactttaacattgtt 109
              |||||| |||||| ||||||||||| ||||||
Sbjct: 133749 ataattcaaatgcccaaaactttaatattgtt 133780
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>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           PAC clone:P0476C12
          Length = 157570

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 281 gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgca 328
           |||||||||||| |||| |||||||| |||||||| ||||||||||||
Sbjct: 817 gggtactcaaaggcaacatctttcccacaaagcctacggtagactgca 864



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 78  ataatttaaatgctcaaaactttaacattgtt 109
           |||||| |||||| ||||||||||| ||||||
Sbjct: 683 ataattcaaatgcccaaaactttaatattgtt 714
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>gb|AY103554.1| Zea mays PCO154340 mRNA sequence
          Length = 1075

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 270 tttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcag 329
           |||||| || ||||||||||||||| || |||||||| || |||||||||||||| ||||
Sbjct: 715 tttcggtcatagggtactcaaagaccacatctttcccacacagcctgcggtagaccgcag 656



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 79  taatttaaatgctcaaaactttaacattgttcacgttcattgcca 123
           ||||||||||||||||||| |||||||||||||||| || |||||
Sbjct: 892 taatttaaatgctcaaaac-ttaacattgttcacgtccactgcca 849
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>gb|BT017481.1| Zea mays clone EL01N0409H01.c mRNA sequence
          Length = 840

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 280 agggtactcaaagacaacgtctttcccgcaaagcctgcggtagac 324
           ||||||||||||||| || |||||||| || ||||||||||||||
Sbjct: 629 agggtactcaaagaccacatctttcccacacagcctgcggtagac 585



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 41/45 (91%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 79  taatttaaatgctcaaaactttaacattgttcacgttcattgcca 123
           |||||||| |||||||||| |||||||||||||||| || |||||
Sbjct: 815 taatttaattgctcaaaac-ttaacattgttcacgtccactgcca 772
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>gb|AF118149.1|AF118149 Secale cereale ribosomal protein S7 mRNA, complete cds
          Length = 819

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                       
Query: 259 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 318
           |||||| || |||||||| || || |||||| | || || ||||| || |||||||||||
Sbjct: 617 tcttcaagcagtttcggcaaccggatactcatacaccacatctttgccacaaagcctgcg 558

                      
Query: 319 gtagactgcag 329
           ||| |||||||
Sbjct: 557 gtacactgcag 547
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>ref|XM_651851.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (6.t00008)
            partial mRNA
          Length = 8574

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 184  atagcacaactaactgaagcatcaa 208
            |||| ||||||||||||||||||||
Sbjct: 3728 ataggacaactaactgaagcatcaa 3704
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>emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2
          Length = 384550

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 1      aaatgacaatgaaatgcaacaagat 25
              ||||||||| |||||||||||||||
Sbjct: 258358 aaatgacaaggaaatgcaacaagat 258382
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>gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-245A17, complete sequence
          Length = 180573

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 76     tcataatttaaatgctcaaaa 96
              |||||||||||||||||||||
Sbjct: 109493 tcataatttaaatgctcaaaa 109473
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>dbj|AK114478.1| Ciona intestinalis cDNA, clone:cieg003k19, full insert sequence
          Length = 1418

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 5   gacaatgaaatgcaacaagattaca 29
           ||||||||||||| |||||||||||
Sbjct: 972 gacaatgaaatgctacaagattaca 996
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>dbj|AP005120.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-513M1, complete
             sequences
          Length = 125561

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    tcataatttaaatgctcaaaa 96
             |||||||||||||||||||||
Sbjct: 85452 tcataatttaaatgctcaaaa 85472
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>ref|XM_447213.1| Candida glabrata CBS138, CAGL0H09526g partial mRNA
          Length = 3408

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   agattacacaatacctagat 41
            ||||||||||||||||||||
Sbjct: 1511 agattacacaatacctagat 1530
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>ref|XM_721576.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06084)
           partial mRNA
          Length = 1296

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 77  cataatttaaatgctcaaaa 96
           ||||||||||||||||||||
Sbjct: 760 cataatttaaatgctcaaaa 741
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>emb|AL391812.7| Human DNA sequence from clone RP13-94I22 on chromosome 10 Contains part
             of the MYO3A gene for myosin IIIA, complete sequence
          Length = 61212

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   ttcattgccatctccatcaa 133
             ||||||||||||||||||||
Sbjct: 34333 ttcattgccatctccatcaa 34314
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>gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 of the complete genome
          Length = 300923

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 78     ataatttaaatgctcaaaacttta 101
              ||||||||||||| ||||||||||
Sbjct: 287383 ataatttaaatgcacaaaacttta 287360
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>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence
          Length = 1050361

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     agattacacaatacctagat 41
              ||||||||||||||||||||
Sbjct: 933173 agattacacaatacctagat 933154
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>gb|AC040917.6| Homo sapiens chromosome 8, clone RP11-1M21, complete sequence
          Length = 158031

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   aaactatgtttctggaatacattg 183
             |||||||||| |||||||||||||
Sbjct: 73158 aaactatgttgctggaatacattg 73181
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>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome
          Length = 1229853

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     ataatttaaatgctcaaaacttta 101
              ||||||||||||| ||||||||||
Sbjct: 551314 ataatttaaatgcacaaaacttta 551337
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>gb|AC069506.14| Homo sapiens 3 BAC RP11-321G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 131274

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    cgttcataatttaaatgctc 92
             ||||||||||||||||||||
Sbjct: 90584 cgttcataatttaaatgctc 90603
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>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome
          Length = 1230230

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 78     ataatttaaatgctcaaaacttta 101
              ||||||||||||| ||||||||||
Sbjct: 289969 ataatttaaatgcacaaaacttta 289946
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>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence
          Length = 1226565

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 78     ataatttaaatgctcaaaacttta 101
              ||||||||||||| ||||||||||
Sbjct: 289591 ataatttaaatgcacaaaacttta 289568
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>gb|AF056316.1|AF056316 Avicennia marina 40S ribosome protein S7 mRNA, complete cds
          Length = 833

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 tcaaagacaacgtctttccc 306
           ||||||||||||||||||||
Sbjct: 619 tcaaagacaacgtctttccc 600
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>gb|AF098519.1|AF098519 Avicennia marina unknown mRNA
          Length = 833

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 tcaaagacaacgtctttccc 306
           ||||||||||||||||||||
Sbjct: 619 tcaaagacaacgtctttccc 600
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>gb|AF207953.5| Homo sapiens chromosome 8 clone CTA-389B map q21.13, complete sequence
          Length = 112288

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   aaactatgtttctggaatacattg 183
             |||||||||| |||||||||||||
Sbjct: 86867 aaactatgttgctggaatacattg 86890
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>emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chromosome 4, complete
             sequence
          Length = 141401

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    tttaacattgttcacgttca 117
             ||||||||||||||||||||
Sbjct: 44763 tttaacattgttcacgttca 44744


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,026,458
Number of Sequences: 3902068
Number of extensions: 3026458
Number of successful extensions: 60644
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60481
Number of HSP's gapped (non-prelim): 154
length of query: 330
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 308
effective length of database: 17,147,199,772
effective search space: 5281337529776
effective search space used: 5281337529776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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