ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22e13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF508969.1| Triticum aestivum translation initiation factor m... 210 8e-52
2emb|AJ249397.1|PPR249397 Phleum pratense mRNA for putative prote... 184 4e-44
3emb|AJ242801.1|SST242801 Sporobolus stapfianus partial mRNA for ... 155 4e-35
4gb|BT016285.1| Zea mays clone Contig118 mRNA sequence 151 6e-34
5gb|AY103847.1| Zea mays PCO105184 mRNA sequence 151 6e-34
6gb|AF034944.1|AF034944 Zea mays translation initiation factor GO... 151 6e-34
7gb|DQ083223.1| Oryza sativa (indica cultivar-group) clone 5B12A6... 145 4e-32
8dbj|AK120697.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 9e-30
9dbj|AK105037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 9e-30
10gb|AF094774.1|AF094774 Oryza sativa translation initiation facto... 137 9e-30
11gb|AF380357.1|AF380357 Porteresia coarctata translational initia... 123 1e-25
12ref|XM_478516.1| Oryza sativa (japonica cultivar-group), mRNA 117 9e-24
13dbj|D10959.1|RIC407GS2 Oryza sativa mRNA for GOS2 101 5e-19
14gb|BT013323.1| Lycopersicon esculentum clone 135043R, mRNA sequence 94 1e-16
15dbj|AB003378.1| Salix bakko mRNA for SUI1 homolog, complete cds 92 5e-16
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 90 2e-15
17dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic D... 90 2e-15
18emb|X51910.1|OSGOS2G O.sativa (rice) constitutive GOS2 gene 88 8e-15
19gb|BT013262.1| Lycopersicon esculentum clone 134804F, mRNA sequence 86 3e-14
20ref|NM_104307.3| Arabidopsis thaliana translation initiation fac... 70 2e-09
21gb|DQ222518.1| Solanum tuberosum clone 120A06 unknown mRNA 70 2e-09
22gb|AF372910.1|AF372910 Arabidopsis thaliana At1g54290/F20D21_53 ... 70 2e-09
23emb|BX817291.1|CNS0ACKO Arabidopsis thaliana Full-length cDNA Co... 70 2e-09
24ref|NM_118847.2| Arabidopsis thaliana translation initiation fac... 68 7e-09
25emb|AJ519839.1|CAR519839 Coffea arabica mRNA for SUI1 protein 68 7e-09
26gb|AY037234.1| Arabidopsis thaliana AT4g27130/T24A18_80 mRNA, co... 68 7e-09
27emb|BX828314.1|CNS0A3U9 Arabidopsis thaliana Full-length cDNA Co... 68 7e-09
28emb|BX828730.1|CNS0A3GG Arabidopsis thaliana Full-length cDNA Co... 68 7e-09
29gb|AY088288.1| Arabidopsis thaliana clone 5206 mRNA, complete se... 68 7e-09
30gb|AF098672.1|AF098672 Brassica oleracea translation initiation ... 66 3e-08
31gb|BT000649.1| Arabidopsis thaliana putative protein translation... 62 4e-07
32gb|AY060537.1| Arabidopsis thaliana AT4g27130/T24A18_80 mRNA, co... 62 4e-07
33gb|AF091857.1|AF091857 Pimpinella brachycarpa protein translatio... 52 4e-04
34ref|NM_124857.2| Arabidopsis thaliana translation initiation fac... 46 0.026
35gb|AC005287.4| Arabidopsis thaliana chromosome I BAC F20D21 geno... 46 0.026
36emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, ... 46 0.026
37emb|AL035680.1|ATT24A18 Arabidopsis thaliana DNA chromosome 4, B... 46 0.026
38gb|BT005836.1| Arabidopsis thaliana At5g54760 gene, complete cds 46 0.026
39gb|U81042.1|ATU81042 Arabidopsis thaliana translation initiation... 46 0.026
40gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete se... 44 0.10
41emb|AJ718439.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC1-12-24... 42 0.40
42gb|CP000249.1| Frankia sp. CcI3, complete genome 40 1.6
43gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, com... 38 6.3
44gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, co... 38 6.3
45emb|CT025601.7| Mouse DNA sequence from clone RP23-424B7 on chro... 38 6.3
46gb|AC123790.4| Mus musculus BAC clone RP24-287C19 from chromosom... 38 6.3
47emb|AL355576.14| Human DNA sequence from clone RP11-305F4 on chr... 38 6.3
48emb|AJ309088.1|PPI309088 Pinus pinaster partial mRNA for putativ... 38 6.3
49gb|AC154456.2| Mus musculus BAC clone RP23-186O10 from chromosom... 38 6.3
50gb|AC154588.2| Mus musculus BAC clone RP23-363L9 from chromosome... 38 6.3
51dbj|AK047548.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 38 6.3
52gb|AC101703.11| Mus musculus chromosome 1, clone RP23-248B15, co... 38 6.3
53gb|AC116691.12| Mus musculus chromosome 1, clone RP24-312I13, co... 38 6.3
54dbj|AP000974.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 6.3
55gb|AC170897.3| Mus musculus BAC clone RP23-416P3 from chromosome... 38 6.3
56gb|AC161449.4| Mus musculus BAC clone RP24-124N18 from chromosom... 38 6.3 
>gb|AF508969.1| Triticum aestivum translation initiation factor mRNA, complete cds
          Length = 742

 Score =  210 bits (106), Expect = 8e-52
 Identities = 122/129 (94%)
 Strand = Plus / Minus

                                                                       
Query: 4   agactctgataaggagctggcagttgctcanaaaccatgaatnttgntgtgttccttctt 63
           ||||||||||| |||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct: 510 agactctgatatggagctggcagttgctcagaaaccatgaatcttgatgtgttccttctt 451

                                                                       
Query: 64  cacaatgcccgcctggacaaggaagttngagacgttcttcctctgatcaccctggagntg 123
           ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 450 cacaatgccggcctggacaaggaagtttgagacgttcttcctctgatcaccctggagttg 391

                    
Query: 124 aatgacctg 132
           |||||||||
Sbjct: 390 aatgacctg 382
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>emb|AJ249397.1|PPR249397 Phleum pratense mRNA for putative protein translation factor SUI
           (SUI1 gene), partial
          Length = 560

 Score =  184 bits (93), Expect = 4e-44
 Identities = 121/132 (91%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagactctgataaggagctggcagttgctcanaaaccatgaatnttgntgtgttcctt 60
           |||||||| ||||| |||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 318 tgcagactttgatatggagctggcagttgctcagaaaccatgaatcttgatgtgttcctt 259

                                                                       
Query: 61  cttcacaatgcccgcctggacaaggaagttngagacgttcttcctctgatcaccctggag 120
            ||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 258 tttcacaatgccagcctggacgaggaaatttgagacgttcttcctctgatcaccctggag 199

                       
Query: 121 ntgaatgacctg 132
            |||||||||||
Sbjct: 198 ttgaatgacctg 187
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>emb|AJ242801.1|SST242801 Sporobolus stapfianus partial mRNA for putative translation
           initiation factor eIF-1
          Length = 796

 Score =  155 bits (78), Expect = 4e-35
 Identities = 103/113 (91%)
 Strand = Plus / Minus

                                                                       
Query: 20  ctggcagttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctgg 79
           |||||||||||||| ||||||||||| ||| |||| ||||| ||||||||||| ||||||
Sbjct: 526 ctggcagttgctcaaaaaccatgaattttgatgtgctcctttttcacaatgccggcctgg 467

                                                                
Query: 80  acaaggaagttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
           |||||||| || |||||||||||||||||||||||||| || |||||||||||
Sbjct: 466 acaaggaaatttgagacgttcttcctctgatcaccctgaagttgaatgacctg 414
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>gb|BT016285.1| Zea mays clone Contig118 mRNA sequence
          Length = 861

 Score =  151 bits (76), Expect = 6e-34
 Identities = 98/107 (91%)
 Strand = Plus / Minus

                                                                       
Query: 26  gttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaagg 85
           |||||||| ||||||||||| ||| |||| ||||||||||||||||| |||||||| |||
Sbjct: 598 gttgctcagaaaccatgaatcttgatgtgctccttcttcacaatgccggcctggacgagg 539

                                                          
Query: 86  aagttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
           || || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 538 aaattcgagacgttcttcctctgatcaccctggagctgaatgacctg 492
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>gb|AY103847.1| Zea mays PCO105184 mRNA sequence
          Length = 1006

 Score =  151 bits (76), Expect = 6e-34
 Identities = 98/107 (91%)
 Strand = Plus / Minus

                                                                       
Query: 26  gttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaagg 85
           |||||||| ||||||||||| ||| |||| ||||||||||||||||| |||||||| |||
Sbjct: 716 gttgctcagaaaccatgaatcttgatgtgctccttcttcacaatgccggcctggacgagg 657

                                                          
Query: 86  aagttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
           || || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 656 aaattcgagacgttcttcctctgatcaccctggagctgaatgacctg 610
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>gb|AF034944.1|AF034944 Zea mays translation initiation factor GOS2 (TIF) mRNA, complete
           cds
          Length = 759

 Score =  151 bits (76), Expect = 6e-34
 Identities = 98/107 (91%)
 Strand = Plus / Minus

                                                                       
Query: 26  gttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaagg 85
           |||||||| ||||||||||| ||| |||| ||||||||||||||||| |||||||| |||
Sbjct: 488 gttgctcagaaaccatgaatcttgatgtgctccttcttcacaatgccggcctggacgagg 429

                                                          
Query: 86  aagttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
           || || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 428 aaattcgagacgttcttcctctgatcaccctggagctgaatgacctg 382
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>gb|DQ083223.1| Oryza sativa (indica cultivar-group) clone 5B12A69 mRNA sequence
          Length = 209

 Score =  145 bits (73), Expect = 4e-32
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                       
Query: 21  tggcagttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctgga 80
           ||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||| |
Sbjct: 139 tggcagttgctcagaaaccatgaatcttgatgtgttccttcttcacaatgccggcctgaa 80

                                                               
Query: 81  caaggaagttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
           |||| || || || ||||||||||||||||||||||| || |||||||||||
Sbjct: 79  caagaaaatttgatacgttcttcctctgatcaccctgaagttgaatgacctg 28
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>dbj|AK120697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170I05, full
           insert sequence
          Length = 752

 Score =  137 bits (69), Expect = 9e-30
 Identities = 100/112 (89%)
 Strand = Plus / Minus

                                                                       
Query: 21  tggcagttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctgga 80
           ||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||| |
Sbjct: 536 tggcagttgctcagaaaccatgaatcttgatgtgttccttcttcacaatgccggcctgaa 477

                                                               
Query: 81  caaggaagttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
           |||| || || || ||||| ||||||||||||||||| || |||||||||||
Sbjct: 476 caagaaaatttgatacgtttttcctctgatcaccctgaagttgaatgacctg 425
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>dbj|AK105037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C07, full
            insert sequence
          Length = 1275

 Score =  137 bits (69), Expect = 9e-30
 Identities = 100/112 (89%)
 Strand = Plus / Minus

                                                                        
Query: 21   tggcagttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctgga 80
            ||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||| |
Sbjct: 1059 tggcagttgctcagaaaccatgaatcttgatgtgttccttcttcacaatgccggcctgaa 1000

                                                                
Query: 81   caaggaagttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
            |||| || || || ||||| ||||||||||||||||| || |||||||||||
Sbjct: 999  caagaaaatttgatacgtttttcctctgatcaccctgaagttgaatgacctg 948
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>gb|AF094774.1|AF094774 Oryza sativa translation initiation factor (GOS2) mRNA, complete
           cds
          Length = 744

 Score =  137 bits (69), Expect = 9e-30
 Identities = 100/112 (89%)
 Strand = Plus / Minus

                                                                       
Query: 21  tggcagttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctgga 80
           ||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||| |
Sbjct: 516 tggcagttgctcagaaaccatgaatcttgatgtgttccttcttcacaatgccggcctgaa 457

                                                               
Query: 81  caaggaagttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
           |||| || || || ||||| ||||||||||||||||| || |||||||||||
Sbjct: 456 caagaaaatttgatacgtttttcctctgatcaccctgaagttgaatgacctg 405
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>gb|AF380357.1|AF380357 Porteresia coarctata translational initiation factor eIF1 mRNA,
           complete cds
          Length = 773

 Score =  123 bits (62), Expect = 1e-25
 Identities = 93/105 (88%)
 Strand = Plus / Minus

                                                                       
Query: 28  tgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaa 87
           |||||| ||||||||||| ||| |||||||||||||||||||||| ||||| ||||| ||
Sbjct: 506 tgctcagaaaccatgaatcttgatgtgttccttcttcacaatgccggcctgaacaagaaa 447

                                                        
Query: 88  gttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
            || || ||||| ||||||||||||||||| || |||||||||||
Sbjct: 446 atttgatacgtttttcctctgatcaccctgaagttgaatgacctg 402
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>ref|XM_478516.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 348

 Score =  117 bits (59), Expect = 9e-24
 Identities = 90/102 (88%)
 Strand = Plus / Minus

                                                                       
Query: 31  tcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaagtt 90
           ||| ||||||||||| ||| |||||||||||||||||||||| ||||| ||||| || ||
Sbjct: 348 tcagaaaccatgaatcttgatgtgttccttcttcacaatgccggcctgaacaagaaaatt 289

                                                     
Query: 91  ngagacgttcttcctctgatcaccctggagntgaatgacctg 132
            || ||||| ||||||||||||||||| || |||||||||||
Sbjct: 288 tgatacgtttttcctctgatcaccctgaagttgaatgacctg 247
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>dbj|D10959.1|RIC407GS2 Oryza sativa mRNA for GOS2
          Length = 366

 Score =  101 bits (51), Expect = 5e-19
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                       
Query: 21  tggcagttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctgga 80
           ||||||||||||| ||||||||| | ||| |||||||||||||||||||||| ||||| |
Sbjct: 151 tggcagttgctcagaaaccatgattcttgatgtgttccttcttcacaatgccggcctgaa 92

                                                  
Query: 81  caaggaagttngagacgttcttcctctgatcaccctgga 119
           |||| || || |  ||||| |||||||| ||||||||||
Sbjct: 91  caagaaaatttggtacgtttttcctctgttcaccctgga 53
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>gb|BT013323.1| Lycopersicon esculentum clone 135043R, mRNA sequence
          Length = 787

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 87/102 (85%)
 Strand = Plus / Minus

                                                                       
Query: 31  tcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaagtt 90
           ||| ||||||||||| ||| ||||||| |||||||| || || ||||||||||| ||  |
Sbjct: 511 tcagaaaccatgaattttgatgtgttctttcttcacgattccagcctggacaagaaatgt 452

                                                     
Query: 91  ngagacgttcttcctctgatcaccctggagntgaatgacctg 132
            || |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 451 agaaacgttctttctctgatcaccctggagttgaataacctg 410
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>dbj|AB003378.1| Salix bakko mRNA for SUI1 homolog, complete cds
          Length = 700

 Score = 91.7 bits (46), Expect = 5e-16
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                       
Query: 35  aaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaagttngag 94
           ||||||||||| ||| | | ||||||||||||||| || ||||| || ||||||   |||
Sbjct: 476 aaaccatgaatcttgatattttccttcttcacaataccagcctgcacgaggaaggaggag 417

                                                 
Query: 95  acgttcttcctctgatcaccctggagntgaatgacctg 132
           ||||||||||| ||||||||||| || |||||||||||
Sbjct: 416 acgttcttcctttgatcaccctgtagttgaatgacctg 379
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 21       tggcagttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctg 78
                ||||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct: 20679873 tggcagttgctcagaaaccatgaatcttgatgtgttccttcttcacaatgccggcctg 20679930



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 75       cctggacaaggaagttngagacgttcttcctctgatcaccctggagntgaatgacct 131
                |||| ||||| || || || ||||| ||||||||||||||||| || ||||||||||
Sbjct: 20680033 cctgaacaagaaaatttgatacgtttttcctctgatcaccctgaagttgaatgacct 20680089
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>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0681F05
          Length = 144741

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 21    tggcagttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctg 78
             ||||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct: 32623 tggcagttgctcagaaaccatgaatcttgatgtgttccttcttcacaatgccggcctg 32680



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 75    cctggacaaggaagttngagacgttcttcctctgatcaccctggagntgaatgacct 131
             |||| ||||| || || || ||||| ||||||||||||||||| || ||||||||||
Sbjct: 32783 cctgaacaagaaaatttgatacgtttttcctctgatcaccctgaagttgaatgacct 32839
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>emb|X51910.1|OSGOS2G O.sativa (rice) constitutive GOS2 gene
          Length = 3192

 Score = 87.7 bits (44), Expect = 8e-15
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                     
Query: 22   ggcagttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctg 78
            |||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct: 2838 ggcagttgctcagaaaccatgaatcttgatgtgttccttcttcacaatgccggcctg 2782



 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 75   cctggacaaggaagttngagacgttcttcctctgatcaccctggagntgaatgacct 131
            |||| ||||| || || || ||||||||||||||||||||||| || ||||||||||
Sbjct: 2679 cctgaacaagaaaatttgatacgttcttcctctgatcaccctgaagttgaatgacct 2623
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>gb|BT013262.1| Lycopersicon esculentum clone 134804F, mRNA sequence
          Length = 1343

 Score = 85.7 bits (43), Expect = 3e-14
 Identities = 86/102 (84%)
 Strand = Plus / Minus

                                                                        
Query: 31   tcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaagtt 90
            ||| ||||||||||| ||| |||| || |||||||| || || ||||||||||| ||| |
Sbjct: 1114 tcagaaaccatgaattttgatgtgctctttcttcacgattccagcctggacaagaaaggt 1055

                                                      
Query: 91   ngagacgttcttcctctgatcaccctggagntgaatgacctg 132
             || |||||||||||||| |||||||| || ||||| |||||
Sbjct: 1054 agaaacgttcttcctctggtcaccctgaagttgaataacctg 1013
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>ref|NM_104307.3| Arabidopsis thaliana translation initiation factor AT1G54290 mRNA,
           complete cds
          Length = 811

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 87/106 (82%)
 Strand = Plus / Minus

                                                                       
Query: 27  ttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaagga 86
           ||||||| |||||||| || ||  |||  |||||||||||||  || ||||| |||||||
Sbjct: 590 ttgctcaaaaaccatggatttttatgttatccttcttcacaagcccagcctgaacaagga 531

                                                         
Query: 87  agttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
           |  | || |||||||||||||||||||| || || ||||| |||||
Sbjct: 530 acgtagatacgttcttcctctgatcaccttgaagctgaataacctg 485
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>gb|DQ222518.1| Solanum tuberosum clone 120A06 unknown mRNA
          Length = 699

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                       
Query: 31  tcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaagtt 90
           ||| ||||||||||| ||| |||| || ||||||||||| || ||||||||||| ||  |
Sbjct: 487 tcagaaaccatgaattttgatgtgctctttcttcacaattccagcctggacaagaaatgt 428

                                                     
Query: 91  ngagacgttcttcctctgatcaccctggagntgaatgacctg 132
            || |||||||||| ||| ||| |||| || ||||| |||||
Sbjct: 427 agaaacgttcttccgctggtcatcctgaagttgaataacctg 386
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>gb|AF372910.1|AF372910 Arabidopsis thaliana At1g54290/F20D21_53 mRNA, complete cds
          Length = 742

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 87/106 (82%)
 Strand = Plus / Minus

                                                                       
Query: 27  ttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaagga 86
           ||||||| |||||||| || ||  |||  |||||||||||||  || ||||| |||||||
Sbjct: 528 ttgctcaaaaaccatggatttttatgttatccttcttcacaagcccagcctgaacaagga 469

                                                         
Query: 87  agttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
           |  | || |||||||||||||||||||| || || ||||| |||||
Sbjct: 468 acgtagatacgttcttcctctgatcaccttgaagctgaataacctg 423
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>emb|BX817291.1|CNS0ACKO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL12ZC05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 748

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 87/106 (82%)
 Strand = Plus / Minus

                                                                       
Query: 27  ttgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaagga 86
           ||||||| |||||||| || ||  |||  |||||||||||||  || ||||| |||||||
Sbjct: 527 ttgctcaaaaaccatggatttttatgttatccttcttcacaagcccagcctgaacaagga 468

                                                         
Query: 87  agttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
           |  | || |||||||||||||||||||| || || ||||| |||||
Sbjct: 467 acgtagatacgttcttcctctgatcaccttgaagctgaataacctg 422
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>ref|NM_118847.2| Arabidopsis thaliana translation initiation factor AT4G27130 mRNA,
           complete cds
          Length = 811

 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                       
Query: 28  tgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaa 87
           |||||| |||||||| || ||| |||  || ||||||||||  || |||||||| |||||
Sbjct: 595 tgctcagaaaccatggatcttgatgttatctttcttcacaagcccagcctggactaggaa 536

                                                        
Query: 88  gttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
             | |||||||||||||||||||| || || || ||||| |||||
Sbjct: 535 cgtggagacgttcttcctctgatcgccttgaagctgaataacctg 491
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>emb|AJ519839.1|CAR519839 Coffea arabica mRNA for SUI1 protein
          Length = 678

 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                       
Query: 35  aaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaagttngag 94
           ||||||||||| ||  ||||||||||||| || || || ||||| ||||||||| | || 
Sbjct: 472 aaaccatgaatctttatgtgttccttctttacgatcccagcctgaacaaggaagcttgaa 413

                                                 
Query: 95  acgttcttcctctgatcaccctggagntgaatgacctg 132
           || ||||| | |||||| || ||||| |||||||||||
Sbjct: 412 acattcttacgctgatccccttggagttgaatgacctg 375
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>gb|AY037234.1| Arabidopsis thaliana AT4g27130/T24A18_80 mRNA, complete cds
          Length = 737

 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                       
Query: 28  tgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaa 87
           |||||| |||||||| || ||| |||  || ||||||||||  || |||||||| |||||
Sbjct: 547 tgctcagaaaccatggatcttgatgttatctttcttcacaagcccagcctggactaggaa 488

                                                        
Query: 88  gttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
             | |||||||||||||||||||| || || || ||||| |||||
Sbjct: 487 cgtggagacgttcttcctctgatcgccttgaagctgaataacctg 443
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>emb|BX828314.1|CNS0A3U9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH75ZH04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 738

 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                       
Query: 28  tgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaa 87
           |||||| |||||||| || ||| |||  || ||||||||||  || |||||||| |||||
Sbjct: 524 tgctcagaaaccatggatcttgatgttatctttcttcacaagcccagcctggactaggaa 465

                                                        
Query: 88  gttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
             | |||||||||||||||||||| || || || ||||| |||||
Sbjct: 464 cgtggagacgttcttcctctgatcgccttgaagctgaataacctg 420
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>emb|BX828730.1|CNS0A3GG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL33ZF02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 735

 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                       
Query: 28  tgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaa 87
           |||||| |||||||| || ||| |||  || ||||||||||  || |||||||| |||||
Sbjct: 525 tgctcagaaaccatggatcttgatgttatctttcttcacaagcccagcctggactaggaa 466

                                                        
Query: 88  gttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
             | |||||||||||||||||||| || || || ||||| |||||
Sbjct: 465 cgtggagacgttcttcctctgatcgccttgaagctgaataacctg 421
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>gb|AY088288.1| Arabidopsis thaliana clone 5206 mRNA, complete sequence
          Length = 805

 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                       
Query: 28  tgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaa 87
           |||||| |||||||| || ||| |||  || ||||||||||  || |||||||| |||||
Sbjct: 595 tgctcagaaaccatggatcttgatgttatctttcttcacaagcccagcctggactaggaa 536

                                                        
Query: 88  gttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
             | |||||||||||||||||||| || || || ||||| |||||
Sbjct: 535 cgtggagacgttcttcctctgatcgccttgaagctgaataacctg 491
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>gb|AF098672.1|AF098672 Brassica oleracea translation initiation factor nps45 mRNA,
           complete cds
          Length = 560

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                       
Query: 29  gctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaag 88
           ||||| |||||||| || | | |||  |||||||||||||  || |||||||||||||| 
Sbjct: 371 gctcagaaaccatggatctggatgtcgtccttcttcacaagcccagcctggacaaggaac 312

                                                       
Query: 89  ttngagacgttcttcctctgatcaccctggagntgaatgacctg 132
            | ||||||||||||||||| || || || || ||||| |||||
Sbjct: 311 gtggagacgttcttcctctggtcgccttgaagctgaataacctg 268
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>gb|BT000649.1| Arabidopsis thaliana putative protein translation factor Sui1
           homolog (At1g54290/F20D21_53) mRNA, complete cds
          Length = 342

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 56  tccttcttcacaatgcccgcctggacaaggaagttngagacgttcttcctctgatcaccc 115
           |||||||||||||  || ||||| ||||||||  | || |||||||||||||||||||| 
Sbjct: 317 tccttcttcacaagcccagcctgaacaaggaacgtagatacgttcttcctctgatcacct 258

                            
Query: 116 tggagntgaatgacctg 132
           || || ||||| |||||
Sbjct: 257 tgaagctgaataacctg 241
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>gb|AY060537.1| Arabidopsis thaliana AT4g27130/T24A18_80 mRNA, complete cds
          Length = 342

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 83/102 (81%)
 Strand = Plus / Minus

                                                                       
Query: 31  tcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaagtt 90
           ||| |||||||| || ||| |||  || ||||||||||  || |||||||| |||||  |
Sbjct: 342 tcagaaaccatggatcttgatgttatctttcttcacaagcccagcctggactaggaacgt 283

                                                     
Query: 91  ngagacgttcttcctctgatcaccctggagntgaatgacctg 132
            |||||||||||||||||||| || || || ||||| |||||
Sbjct: 282 ggagacgttcttcctctgatcgccttgaagctgaataacctg 241
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>gb|AF091857.1|AF091857 Pimpinella brachycarpa protein translation factor SUI1 homolog
           mRNA, complete cds
          Length = 533

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 56  tccttcttcacaatgcccgcctggacaaggaagttngagacgttcttcctctgatcaccc 115
           |||||||| ||||| || |||||||||| |||  | ||||||||||| | |||||| || 
Sbjct: 364 tccttcttgacaatcccagcctggacaatgaaagtggagacgttcttgcgctgatcgcct 305

                           
Query: 116 tggagntgaatgacct 131
           || || ||||||||||
Sbjct: 304 tgaagttgaatgacct 289
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>ref|NM_124857.2| Arabidopsis thaliana translation initiation factor AT5G54760 mRNA,
           complete cds
          Length = 706

 Score = 46.1 bits (23), Expect = 0.026
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 35  aaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaagttngag 94
           |||||||| || ||| |||  ||||||||||| |  || ||||||||||||||  | |||
Sbjct: 484 aaaccatggatcttgatgttatccttcttcaccaaaccagcctggacaaggaatgtggag 425

                   
Query: 95  acgttctt 102
           ||||||||
Sbjct: 424 acgttctt 417
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>gb|AC005287.4| Arabidopsis thaliana chromosome I BAC F20D21 genomic sequence, complete
             sequence
          Length = 143186

 Score = 46.1 bits (23), Expect = 0.026
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                      
Query: 75    cctggacaaggaagttngagacgttcttcctctgatcaccctggagntgaatgacct 131
             |||| ||||||||  | || |||||||||||||||||||| || || ||||| ||||
Sbjct: 40362 cctgaacaaggaacgtagatacgttcttcctctgatcaccttgaagctgaataacct 40418
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>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66
          Length = 198372

 Score = 46.1 bits (23), Expect = 0.026
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                       
Query: 75     cctggacaaggaagttngagacgttcttcctctgatcaccctggagntgaatgacct 131
              ||||||| |||||  | |||||||||||||||||||| || || || ||||| ||||
Sbjct: 108793 cctggactaggaacgtggagacgttcttcctctgatcgccttgaagctgaataacct 108849
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>emb|AL035680.1|ATT24A18 Arabidopsis thaliana DNA chromosome 4, BAC clone T24A18, partial
             sequence (ESSA project)
          Length = 45980

 Score = 46.1 bits (23), Expect = 0.026
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                      
Query: 75    cctggacaaggaagttngagacgttcttcctctgatcaccctggagntgaatgacct 131
             ||||||| |||||  | |||||||||||||||||||| || || || ||||| ||||
Sbjct: 25282 cctggactaggaacgtggagacgttcttcctctgatcgccttgaagctgaataacct 25338
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>gb|BT005836.1| Arabidopsis thaliana At5g54760 gene, complete cds
          Length = 342

 Score = 46.1 bits (23), Expect = 0.026
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 35  aaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaaggaagttngag 94
           |||||||| || ||| |||  ||||||||||| |  || ||||||||||||||  | |||
Sbjct: 338 aaaccatggatcttgatgttatccttcttcaccaaaccagcctggacaaggaatgtggag 279

                   
Query: 95  acgttctt 102
           ||||||||
Sbjct: 278 acgttctt 271
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>gb|U81042.1|ATU81042 Arabidopsis thaliana translation initiation factor gene, complete cds
          Length = 1787

 Score = 46.1 bits (23), Expect = 0.026
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 75   cctggacaaggaagttngagacgttcttcctctgatcaccctggagntgaatgacct 131
            ||||||| |||||  | |||||||||||||||||||| || || || ||||| ||||
Sbjct: 1475 cctggactaggaacgtggagacgttcttcctctgatcgccttgaagctgaataacct 1419
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>gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete sequence
          Length = 127640

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 43/51 (84%)
 Strand = Plus / Minus

                                                                
Query: 28    tgctcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctg 78
             |||||| ||||||||||| ||  | || |||||||||||||| || |||||
Sbjct: 54774 tgctcagaaaccatgaattttaatatgctccttcttcacaattccagcctg 54724
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>emb|AJ718439.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC1-12-240, cultivar
          Bright Yellow 2
          Length = 188

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 45/54 (83%)
 Strand = Plus / Minus

                                                                
Query: 31 tcanaaaccatgaatnttgntgtgttccttcttcacaatgcccgcctggacaag 84
          ||| ||||||||||| ||| |||| || |||||||| ||  | |||||||||||
Sbjct: 94 tcagaaaccatgaattttgatgtgctctttcttcacgatttcagcctggacaag 41
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 99      tcttcctctgatcaccctgg 118
               ||||||||||||||||||||
Sbjct: 3620667 tcttcctctgatcaccctgg 3620686
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>gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, complete sequence
          Length = 172617

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    cagactctgataaggagct 21
            |||||||||||||||||||
Sbjct: 5751 cagactctgataaggagct 5733
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>gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, complete sequence
          Length = 204108

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 56     tccttcttcacaatgcccgcctggaca 82
              ||||||||||| ||||| |||||||||
Sbjct: 107022 tccttcttcaccatgcctgcctggaca 107048
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>emb|CT025601.7| Mouse DNA sequence from clone RP23-424B7 on chromosome 17, complete
            sequence
          Length = 197841

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 54   gttccttcttcacaatgcccgcctgga 80
            ||||||||||||| ||||| |||||||
Sbjct: 1004 gttccttcttcaccatgcctgcctgga 978
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>gb|AC123790.4| Mus musculus BAC clone RP24-287C19 from chromosome 1, complete sequence
          Length = 175833

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      ctgataaggagctggcagt 27
              |||||||||||||||||||
Sbjct: 134065 ctgataaggagctggcagt 134083
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>emb|AL355576.14| Human DNA sequence from clone RP11-305F4 on chromosome 13, complete
             sequence
          Length = 148744

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     tgcagactctgataaggag 19
             |||||||||||||||||||
Sbjct: 58955 tgcagactctgataaggag 58973
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>emb|AJ309088.1|PPI309088 Pinus pinaster partial mRNA for putative translation factor
          Length = 635

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 62/77 (80%)
 Strand = Plus / Minus

                                                                       
Query: 56  tccttcttcacaatgcccgcctggacaaggaagttngagacgttcttcctctgatcaccc 115
           ||||| |||||||| || ||||| |||||||| || || || || || |  |||||||||
Sbjct: 511 tcctttttcacaattccagcctgtacaaggaaatttgaaacatttttacgttgatcaccc 452

                            
Query: 116 tggagntgaatgacctg 132
           || || ||||| |||||
Sbjct: 451 tgtagctgaatcacctg 435
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>gb|AC154456.2| Mus musculus BAC clone RP23-186O10 from chromosome 16, complete
             sequence
          Length = 193598

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 56    tccttcttcacaatgcccgcctggaca 82
             ||||||| ||| |||||||||||||||
Sbjct: 95701 tccttctgcaccatgcccgcctggaca 95675
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>gb|AC154588.2| Mus musculus BAC clone RP23-363L9 from chromosome 16, complete sequence
          Length = 200787

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 56    tccttcttcacaatgcccgcctggaca 82
             ||||||| ||| |||||||||||||||
Sbjct: 25888 tccttctgcaccatgcccgcctggaca 25914
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>dbj|AK047548.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930086L21 product:NEUROFASCIN
            (FRAGMENT) homolog [Rattus norvegicus], full insert
            sequence
          Length = 3641

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 5    gactctgataaggagctgg 23
            |||||||||||||||||||
Sbjct: 2498 gactctgataaggagctgg 2480
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>gb|AC101703.11| Mus musculus chromosome 1, clone RP23-248B15, complete sequence
          Length = 208984

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      cagactctgataaggagct 21
              |||||||||||||||||||
Sbjct: 180831 cagactctgataaggagct 180813
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>gb|AC116691.12| Mus musculus chromosome 1, clone RP24-312I13, complete sequence
          Length = 154587

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      gactctgataaggagctgg 23
              |||||||||||||||||||
Sbjct: 105029 gactctgataaggagctgg 105011
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>dbj|AP000974.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-700A24, complete
             sequence
          Length = 94359

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 24    cagttgctcanaaaccatgaat 45
             |||||||||| |||||||||||
Sbjct: 85403 cagttgctcaaaaaccatgaat 85382
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>gb|AC170897.3| Mus musculus BAC clone RP23-416P3 from chromosome 13, complete sequence
          Length = 213810

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 56    tccttcttcacaatgcccgcctggaca 82
             ||||||||||| ||||| |||||||||
Sbjct: 55313 tccttcttcactatgcctgcctggaca 55287
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>gb|AC161449.4| Mus musculus BAC clone RP24-124N18 from chromosome 13, complete
             sequence
          Length = 150173

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 56    tccttcttcacaatgcccgcctggaca 82
             ||||||||||| ||||| |||||||||
Sbjct: 20109 tccttcttcactatgcctgcctggaca 20135


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 803,416
Number of Sequences: 3902068
Number of extensions: 803416
Number of successful extensions: 48217
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 48120
Number of HSP's gapped (non-prelim): 98
length of query: 134
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 113
effective length of database: 17,151,101,840
effective search space: 1938074507920
effective search space used: 1938074507920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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