Clone Name | rbasd21p07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY245454.1| Hordeum vulgare subsp. vulgare thioredoxin h isoform 1 mRNA, complete cds Length = 357 Score = 533 bits (269), Expect = e-148 Identities = 271/272 (99%) Strand = Plus / Minus Query: 207 ttaggtggatgcagaacccatgagggccactatcttggtatggatgtcatccttcctgcc 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 357 ttaggtggatgcagaacccatgagggccactatcttggtatggatgtcatccttcctgcc 298 Query: 267 accgacaacactgtccaccttctcaccgtccttgataaacaggaaggtcggcattgcctc 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 297 accgacaacactgtccaccttctcaccgtccttgataaacaggaaggtcggcattgcctc 238 Query: 327 aacattgtatgcttcagcgacgtccttcagctcatcaacatccaccttcaggaanatggc 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 237 aacattgtatgcttcagcgacgtccttcagctcatcaacatccaccttcaggaagatggc 178 Query: 387 cccagggaacttcttggcgtactcagcaaagactggggctatgacacgacatggaccgca 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 177 cccagggaacttcttggcgtactcagcaaagactggggctatgacacgacatggaccgca 118 Query: 447 ccaggaagcagtgaaatcaatgatcaccagct 478 |||||||||||||||||||||||||||||||| Sbjct: 117 ccaggaagcagtgaaatcaatgatcaccagct 86
>gb|AY072771.1| Triticum aestivum cultivar Soissons thioredoxin H mRNA, complete cds Length = 598 Score = 480 bits (242), Expect = e-132 Identities = 309/331 (93%), Gaps = 3/331 (0%) Strand = Plus / Minus Query: 151 aactacttacaccaggtgctggctcttattgatataaccgggcaatcactcttccctt-- 208 |||||||||||||||||||||||||||||||| | || ||| |||||||||||||| Sbjct: 416 aactacttacaccaggtgctggctcttattgacacaagaggggcatcactcttcccttct 357 Query: 209 -aggtggatgcagaacccatgagggccactatcttggtatggatgtcatccttcctgcca 267 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 356 taggcagatgcagaacccatgagggccactatcttggtatggatatcatccttcctgcca 297 Query: 268 ccgacaacactgtccaccttctcaccgtccttgataaacaggaaggtcggcattgcctca 327 ||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 296 ccgacaacagtgtccaccttcgcaccatccttgataaacaggaaggtcggcattgcctca 237 Query: 328 acattgtatgcttcagcgacgtccttcagctcatcaacatccaccttcaggaanatggcc 387 || ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 236 acgttgtatgcttcagcgacgtccttcagctcgtcaacgtccaccttcaggaaaatggcg 177 Query: 388 ccagggaacttcttggcgtactcagcaaagactggggctatgacacgacatggaccgcac 447 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 176 ccagggaacttcttggcgtactcagcaaagactggggctatgacacgacaaggaccgcac 117 Query: 448 caggaagcagtgaaatcaatgatcaccagct 478 |||||||||||||| |||||||||||||||| Sbjct: 116 caggaagcagtgaagtcaatgatcaccagct 86 Score = 93.7 bits (47), Expect = 5e-16 Identities = 106/121 (87%), Gaps = 6/121 (4%) Strand = Plus / Minus Query: 41 tccaaacttcacaat--agcaactgtagcaaa-cattaggcactgtaattcagaacaacc 97 |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| Sbjct: 559 tccaaacttcacaacgaagcaactgtagcaaaacattaggtactgtaattcagaacaacc 500 Query: 98 ggtgc--atatcttaag-tctgaactctaaaatgaatcaacataaagttcagtcacaact 154 ||||| || ||| ||| ||||||||||||| |||||| || ||||||||||||| ||| Sbjct: 499 ggtgcaaatgtctgaagttctgaactctaaaccgaatcatcacaaagttcagtcacgact 440 Query: 155 a 155 | Sbjct: 439 a 439
>ref|XM_476912.1| Oryza sativa (japonica cultivar-group), mRNA Length = 600 Score = 149 bits (75), Expect = 1e-32 Identities = 152/178 (85%) Strand = Plus / Minus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 349 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 367 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 308 Query: 350 ccttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtact 409 ||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||| | Sbjct: 307 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 248 Query: 410 cagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaat 467 |||| || |||||||| |||| || || || || ||||||||||||||||| ||||| Sbjct: 247 cagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaagtcaat 190
>dbj|AK121423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N23, full insert sequence Length = 733 Score = 149 bits (75), Expect = 1e-32 Identities = 152/178 (85%) Strand = Plus / Minus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 349 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 368 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 309 Query: 350 ccttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtact 409 ||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||| | Sbjct: 308 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 249 Query: 410 cagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaat 467 |||| || |||||||| |||| || || || || ||||||||||||||||| ||||| Sbjct: 248 cagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaagtcaat 191
>dbj|AK059196.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A03, full insert sequence Length = 600 Score = 149 bits (75), Expect = 1e-32 Identities = 152/178 (85%) Strand = Plus / Minus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 349 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 367 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 308 Query: 350 ccttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtact 409 ||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||| | Sbjct: 307 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 248 Query: 410 cagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaat 467 |||| || |||||||| |||| || || || || ||||||||||||||||| ||||| Sbjct: 247 cagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaagtcaat 190
>dbj|D21836.1|RICTH Oryza sativa (japonica cultivar-group) mRNA for thioredoxin h, complete cds Length = 687 Score = 149 bits (75), Expect = 1e-32 Identities = 152/178 (85%) Strand = Plus / Minus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 349 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 330 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 271 Query: 350 ccttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtact 409 ||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||| | Sbjct: 270 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 211 Query: 410 cagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaat 467 |||| || |||||||| |||| || || || || ||||||||||||||||| ||||| Sbjct: 210 cagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaagtcaat 153
>gb|U92541.1|OSU92541 Oryza sativa thioredoxin h mRNA, complete cds Length = 601 Score = 149 bits (75), Expect = 1e-32 Identities = 152/178 (85%) Strand = Plus / Minus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 349 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 359 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 300 Query: 350 ccttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtact 409 ||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||| | Sbjct: 299 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 240 Query: 410 cagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaat 467 |||| || |||||||| |||| || || || || ||||||||||||||||| ||||| Sbjct: 239 cagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaagtcaat 182
>dbj|D21310.1|RICSS396 Oryza sativa SS396 mRNA for thioredoxin, partial sequence Length = 320 Score = 145 bits (73), Expect = 2e-31 Identities = 147/172 (85%) Strand = Plus / Minus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 349 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 192 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 133 Query: 350 ccttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtact 409 ||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||| | Sbjct: 132 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 73 Query: 410 cagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaa 461 |||| || |||||||| |||| || || || || ||||||||||||||||| Sbjct: 72 cagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaa 21
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 101 bits (51), Expect = 2e-18 Identities = 101/118 (85%) Strand = Plus / Plus Query: 350 ccttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtact 409 ||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||| | Sbjct: 4606975 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 4607034 Query: 410 cagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaat 467 |||| || |||||||| |||| || || || || ||||||||||||||||| ||||| Sbjct: 4607035 cagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaagtcaat 4607092 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctcaacattgta 335 |||| |||||||| || |||||||||||||||||||| |||||||| Sbjct: 4606834 caccatccttgatgaataggaaggtcggcattgcctcgacattgta 4606879
>dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_B08 Length = 119212 Score = 101 bits (51), Expect = 2e-18 Identities = 101/118 (85%) Strand = Plus / Plus Query: 350 ccttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtact 409 ||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||| | Sbjct: 72315 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 72374 Query: 410 cagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaat 467 |||| || |||||||| |||| || || || || ||||||||||||||||| ||||| Sbjct: 72375 cagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaagtcaat 72432 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctcaacattgta 335 |||| |||||||| || |||||||||||||||||||| |||||||| Sbjct: 72174 caccatccttgatgaataggaaggtcggcattgcctcgacattgta 72219
>dbj|AP004384.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0506C07 Length = 123451 Score = 101 bits (51), Expect = 2e-18 Identities = 101/118 (85%) Strand = Plus / Plus Query: 350 ccttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtact 409 ||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||| | Sbjct: 14348 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 14407 Query: 410 cagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaat 467 |||| || |||||||| |||| || || || || ||||||||||||||||| ||||| Sbjct: 14408 cagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaagtcaat 14465 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctcaacattgta 335 |||| |||||||| || |||||||||||||||||||| |||||||| Sbjct: 14207 caccatccttgatgaataggaaggtcggcattgcctcgacattgta 14252
>dbj|D26547.1|RICRTH Oryza sativa gene for thioredoxin h, complete cds Length = 2906 Score = 101 bits (51), Expect = 2e-18 Identities = 101/118 (85%) Strand = Plus / Minus Query: 350 ccttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtact 409 ||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||| | Sbjct: 2334 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 2275 Query: 410 cagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaat 467 |||| || |||||||| |||| || || || || ||||||||||||||||| ||||| Sbjct: 2274 cagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaagtcaat 2217 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctcaacattgta 335 |||| |||||||| || |||||||||||||||||||| |||||||| Sbjct: 2475 caccatccttgatgaataggaaggtcggcattgcctcgacattgta 2430
>dbj|D87984.1| Fagopyrum esculentum mRNA for thioredoxin, complete cds Length = 595 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 314 tcggcattgcctcaacattgtatgcttcagcgacgtccttcagctcatcaacatccac 371 ||||||||||||| || |||||| | |||||||| ||||||| |||||||||||||| Sbjct: 332 tcggcattgcctccaccttgtattcctcagcgacatccttcaaatcatcaacatccac 275
>gb|BT017986.1| Zea mays clone EL01N0525F08.c mRNA sequence Length = 687 Score = 58.0 bits (29), Expect = 3e-05 Identities = 91/112 (81%) Strand = Plus / Minus Query: 367 tccaccttcaggaanatggccccagggaacttcttggcgtactcagcaaagactggggct 426 |||||||||||||| | | || || |||||||||||||| || | || | |||||| Sbjct: 252 tccaccttcaggaacacgacctgagtgaacttcttggcgtgttcgacgaacagtggggcg 193 Query: 427 atgacacgacatggaccgcaccaggaagcagtgaaatcaatgatcaccagct 478 ||| | || |||||||||||||||| |||||||| ||||||| |||||||| Sbjct: 192 atggcgcggcatggaccgcaccaggcggcagtgaagtcaatgaccaccagct 141
>gb|AY104876.1| Zea mays PCO064560 mRNA sequence Length = 756 Score = 58.0 bits (29), Expect = 3e-05 Identities = 91/112 (81%) Strand = Plus / Minus Query: 367 tccaccttcaggaanatggccccagggaacttcttggcgtactcagcaaagactggggct 426 |||||||||||||| | | || || |||||||||||||| || | || | |||||| Sbjct: 308 tccaccttcaggaagacgacctgagtgaacttcttggcgtgttcgacgaacagtggggcg 249 Query: 427 atgacacgacatggaccgcaccaggaagcagtgaaatcaatgatcaccagct 478 ||| | || |||||||||||||||| |||||||| ||||||| |||||||| Sbjct: 248 atggcgcggcatggaccgcaccaggcggcagtgaagtcaatgaccaccagct 197
>gb|AY344230.1| Ipomoea batatas thioredoxin H3 mRNA, complete cds Length = 676 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 439 ggaccgcaccaggaagcagtgaaatcaa 466 |||||||||||||||||||||||||||| Sbjct: 246 ggaccgcaccaggaagcagtgaaatcaa 219
>gb|AY170650.1| Pisum sativum clone 3 thioredoxin h mRNA, complete cds Length = 665 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 436 catggaccgcaccaggaagcagtgaaatcaa 466 |||||||||||||| |||||||||||||||| Sbjct: 198 catggaccgcaccaagaagcagtgaaatcaa 168
>gb|AY335159.1| Fagopyrum tataricum thioredoxin mRNA, partial cds Length = 328 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 310 aaggtcggcattgcctcaacattgtatgcttcagcgacgtccttcagctcatcaacatcc 369 ||||||||||||||||| || |||||| | |||||||| || || |||||||||||| Sbjct: 110 aaggtcggcattgcctccactttgtattcctcagcgacatcattacaatcatcaacatcc 51 Query: 370 acctt 374 ||||| Sbjct: 50 acctt 46
>gb|AF420472.2| Triticum aestivum thioredoxin H mRNA, complete cds Length = 547 Score = 50.1 bits (25), Expect = 0.007 Identities = 102/128 (79%) Strand = Plus / Minus Query: 351 cttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtactc 410 |||||| |||||||| || ||||| ||||| | || | ||||||||||||||| || Sbjct: 278 cttcagttcatcaacgtcgaccttgaggaaaacagcagctgggaacttcttggcgagatc 219 Query: 411 agcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaatgat 470 |||||| | ||| || |||| || ||||| |||||||| || |||||||| ||||| | Sbjct: 218 agcaaaaattggagccatgatgcggcatggtccgcaccatgatgcagtgaagtcaatcac 159 Query: 471 caccagct 478 |||||||| Sbjct: 158 caccagct 151
>emb|AJ890021.1| Zea mays mRNA for thioredoxin h2 protein (trxh2 gene), cultivar A69Y, from endosperm tissue Length = 556 Score = 50.1 bits (25), Expect = 0.007 Identities = 90/112 (80%) Strand = Plus / Minus Query: 367 tccaccttcaggaanatggccccagggaacttcttggcgtactcagcaaagactggggct 426 |||||||||||||| | | || || |||||||||||||| || | || | |||||| Sbjct: 197 tccaccttcaggaacacgacctgagtgaacttcttggcgtgttcgacgaacagtggggcg 138 Query: 427 atgacacgacatggaccgcaccaggaagcagtgaaatcaatgatcaccagct 478 ||| | || |||||||||||||||| |||||||| || |||| |||||||| Sbjct: 137 atggcgcggcatggaccgcaccaggcggcagtgaagtcgatgaccaccagct 86
>emb|AJ001903.1|TDAJ1903 Triticum durum mRNA for thioredoxin H Length = 630 Score = 50.1 bits (25), Expect = 0.007 Identities = 102/128 (79%) Strand = Plus / Minus Query: 351 cttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcgtactc 410 |||||| |||||||| || ||||| ||||| | || | ||||||||||||||| || Sbjct: 308 cttcagttcatcaacgtcgaccttgaggaaaacagcagctgggaacttcttggcgagatc 249 Query: 411 agcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaatgat 470 |||||| | ||| || |||| || ||||| |||||||| || |||||||| ||||| | Sbjct: 248 agcaaaaattggagccatgatgcggcatggtccgcaccatgatgcagtgaagtcaatcac 189 Query: 471 caccagct 478 |||||||| Sbjct: 188 caccagct 181
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 427 atgacacgacatggaccgcaccaggaagcagtgaaat 463 |||||||||||||| || |||||||||||| |||||| Sbjct: 17877500 atgacacgacatggtccacaccaggaagcactgaaat 17877464
>dbj|AK101462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040F19, full insert sequence Length = 851 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 427 atgacacgacatggaccgcaccaggaagcagtgaaat 463 |||||||||||||| || |||||||||||| |||||| Sbjct: 720 atgacacgacatggtccacaccaggaagcactgaaat 684
>emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016N04, complete sequence Length = 164645 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 427 atgacacgacatggaccgcaccaggaagcagtgaaat 463 |||||||||||||| || |||||||||||| |||||| Sbjct: 74255 atgacacgacatggtccacaccaggaagcactgaaat 74219
>gb|AY245455.1| Hordeum vulgare subsp. vulgare thioredoxin h isoform 2 mRNA, complete cds Length = 369 Score = 48.1 bits (24), Expect = 0.026 Identities = 72/88 (81%) Strand = Plus / Minus Query: 391 gggaacttcttggcgtactcagcaaagactggggctatgacacgacatggaccgcaccag 450 ||||||||||||||| ||||| || ||||| || |||| || ||||| |||||||| Sbjct: 191 gggaacttcttggcgagatcagcgaaaactggagccatgatgcggcatggtccgcaccat 132 Query: 451 gaagcagtgaaatcaatgatcaccagct 478 || |||||||| ||||| | |||||||| Sbjct: 131 gatgcagtgaagtcaatcaccaccagct 104
>emb|AJ844021.1| Plantago major mRNA for thioredoxin 1 (trx1 gene) Length = 600 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Minus Query: 408 ctcagcaaagactggggctatgacacgacatggaccgcaccaggaagcagtgaaatcaat 467 |||||| |||| |||||| |||| || ||||| || ||||| ||||||||||| ||||| Sbjct: 231 ctcagccaagattggggcgatgaagcggcatggtccacaccacgaagcagtgaagtcaat 172 Query: 468 gatcaccagct 478 | |||||||| Sbjct: 171 aaccaccagct 161
>ref|XM_476046.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 399 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 430 acacgacatggaccgcaccaggaagcagtgaaat 463 ||||||||||| || |||||||||||| |||||| Sbjct: 182 acacgacatggtccacaccaggaagcactgaaat 149
>emb|Z70677.1|RCTHIORXN R.communis mRNA for thioredoxin Length = 603 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Minus Query: 351 cttcagctcatcaacatccaccttcaggaa 380 |||||| ||||| ||||||||||||||||| Sbjct: 235 cttcagttcatccacatccaccttcaggaa 206
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 430 acacgacatggaccgcaccaggaagcagtgaaat 463 ||||||||||| || |||||||||||| |||||| Sbjct: 52878 acacgacatggtccacaccaggaagcactgaaat 52911
>gb|DQ083183.1| Oryza sativa (indica cultivar-group) clone 4S1C03 mRNA sequence Length = 325 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 290 caccgtccttgataaacaggaaggtcggcattgcctca 327 |||| |||||||| || |||||||||||||||| |||| Sbjct: 38 caccatccttgatgaataggaaggtcggcattgtctca 1
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 430 acacgacatggaccgcaccaggaagcagtgaaat 463 ||||||||||| || |||||||||||| |||||| Sbjct: 4078184 acacgacatggtccacaccaggaagcactgaaat 4078217 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 295 tccttgataaacaggaaggtcggcattgcctcaaca 330 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 24965672 tccttcataaacaggaatgttggcatagcctcaaca 24965637
>dbj|AK067480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B08, full insert sequence Length = 3066 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 430 acacgacatggaccgcaccaggaagcagtgaaat 463 ||||||||||| || |||||||||||| |||||| Sbjct: 1942 acacgacatggtccacaccaggaagcactgaaat 1909
>dbj|AK060918.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G10, full insert sequence Length = 1012 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 430 acacgacatggaccgcaccaggaagcagtgaaat 463 ||||||||||| || |||||||||||| |||||| Sbjct: 490 acacgacatggtccacaccaggaagcactgaaat 457
>gb|AF435817.1| Oryza sativa thioredoxin h-like protein mRNA, complete cds Length = 399 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 430 acacgacatggaccgcaccaggaagcagtgaaat 463 ||||||||||| || |||||||||||| |||||| Sbjct: 182 acacgacatggtccacaccaggaagcactgaaat 149
>gb|AF159388.1| Phalaris coerulescens thioredoxin-like protein (Trx) mRNA, Trx-1 allele, complete cds Length = 978 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 427 atgacacgacatggaccgcaccaggaagcagtgaaat 463 |||||||| ||||| || |||||||||||| |||||| Sbjct: 764 atgacacggcatggcccacaccaggaagcactgaaat 728
>ref|XM_503146.1| Yarrowia lipolytica CLIB122, YALI0D22308g predicted mRNA Length = 333 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 265 ccaccgacaacactgtccaccttct 289 ||||||| ||||||||||||||||| Sbjct: 170 ccaccgagaacactgtccaccttct 146
>emb|AJ319808.1|PSA319808 Pisum sativum mRNA for thioredoxin h (trxh gene) Length = 593 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 436 catggaccgcaccaggaagcagtgaaatc 464 |||||||||||||| |||||||| ||||| Sbjct: 184 catggaccgcaccacgaagcagtaaaatc 156
>gb|AF159389.1|AF159389 Phalaris coerulescens thioredoxin-like protein (Trx) mRNA, Trx-2 allele, complete cds Length = 975 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 427 atgacacgacatggaccgcaccaggaagcagtgaaat 463 |||||||| ||||| || |||||||||||| |||||| Sbjct: 761 atgacacggcatggcccacaccaggaagcactgaaat 725
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 ccttcagctcatcaacatcca 370 ||||||||||||||||||||| Sbjct: 6342186 ccttcagctcatcaacatcca 6342206
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 265 ccaccgacaacactgtccaccttct 289 ||||||| ||||||||||||||||| Sbjct: 2837406 ccaccgagaacactgtccaccttct 2837430
>gb|AC145545.2| Homo sapiens chromosome UNKNOWN clone RP11-1365M9, complete sequence Length = 184813 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 99067 ggtggatgcagaacccatga 99048
>ref|XM_475666.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 366 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 295 tccttgataaacaggaaggtcggcattgcctcaaca 330 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 287 tccttcataaacaggaatgttggcatagcctcaaca 252
>ref|XM_586062.2| PREDICTED: Bos taurus similar to discs large homolog 7 (LOC509161), partial mRNA Length = 3198 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccttaggtggatgcagaacc 224 |||||||||||||||||||| Sbjct: 2839 ccttaggtggatgcagaacc 2858
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 295 tccttgataaacaggaaggtcggcattgcctcaaca 330 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 34525 tccttcataaacaggaatgttggcatagcctcaaca 34490
>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence Length = 188992 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 154471 ggtggatgcagaacccatga 154490
>gb|AF286593.2| Triticum aestivum cultivar Soissons thioredoxin H mRNA, complete cds Length = 531 Score = 40.1 bits (20), Expect = 6.5 Identities = 46/55 (83%) Strand = Plus / Minus Query: 351 cttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcg 405 |||||| ||||||||||| ||||| ||||| | || | ||||||||||||||| Sbjct: 255 cttcagttcatcaacatcgaccttgaggaaaacagcagctgggaacttcttggcg 201
>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence Length = 178925 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 131606 ggtggatgcagaacccatga 131625
>gb|AC145616.2| Homo sapiens BAC clone RP11-1172A19 from UL, complete sequence Length = 172810 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 47765 ggtggatgcagaacccatga 47746
>gb|AC145547.3| Homo sapiens BAC clone RP11-1437O6 from UL, complete sequence Length = 185637 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 120315 ggtggatgcagaacccatga 120296
>gb|AC144916.3| Homo sapiens BAC clone RP11-15L7 from UL, complete sequence Length = 158759 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 156142 ggtggatgcagaacccatga 156123
>emb|AL845321.4| Human DNA sequence from clone RP11-236F9 on chromosome 9 Contains an aquaporin 7(AQP7) pseudogene, a novel gene, three novel pseudogenes, a pseudogene similar to part of BMS1-like, ribosome assembly protein (yeast)(BMS1L) and a CpG island, complete sequence Length = 158462 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 155874 ggtggatgcagaacccatga 155855
>emb|AL442223.13| Human DNA sequence from clone RP11-426P2 on chromosome 1 Contains the 5' end of a variant of the DAB1 gene for disabled homolog 1 (Drosophila) and a CpG island, complete sequence Length = 54683 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 cttcacaatagcaactgtagcaaa 70 |||||||||||||| ||||||||| Sbjct: 27256 cttcacaatagcaagtgtagcaaa 27279
>emb|AL133173.20| Human DNA sequence from clone RP11-453N3 on chromosome 10 Contains a RING finger protein 18 (RNF18) pseudogene, an actin-related protein 3 homolog (yeast) (ACTR3) pseudogene, a poly(A) cytoplasmic binding protein 3 (PABPC3) pseudogene, a gene for a novel protein similar to ATP-binding cassette sub-family D (ALD) member 1 (ABCD1), two novel genes and two CpG islands, complete sequence Length = 206192 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 24409 ggtggatgcagaacccatga 24428
>emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in linkage group 21, complete sequence Length = 129478 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 gcaccaggaagcagtgaaat 463 |||||||||||||||||||| Sbjct: 68837 gcaccaggaagcagtgaaat 68856
>gb|AC132872.17| Homo sapiens chromosome 17, clone RP13-516M14, complete sequence Length = 171569 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 gatgtcatccttcctgccaccgac 272 |||| ||||||||||||||||||| Sbjct: 48447 gatgacatccttcctgccaccgac 48470
>emb|AJ404845.1|TAE404845 Triticum aestivum mRNA for thioredoxin h Length = 629 Score = 40.1 bits (20), Expect = 6.5 Identities = 46/55 (83%) Strand = Plus / Minus Query: 351 cttcagctcatcaacatccaccttcaggaanatggccccagggaacttcttggcg 405 |||||| ||||||||||| ||||| ||||| | || | ||||||||||||||| Sbjct: 354 cttcagttcatcaacatcgaccttgaggaaaacagcagctgggaacttcttggcg 300
>gb|AY271308.1| Citrus x paradisi thioredoxin H mRNA, complete cds Length = 784 Score = 40.1 bits (20), Expect = 6.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 358 tcatcaacatccaccttcaggaanatg 384 ||||||||||||||||||| ||| ||| Sbjct: 392 tcatcaacatccaccttcaagaatatg 366
>emb|CR381572.5| Human DNA sequence from clone bP-2168N6 on chromosome 21, complete sequence Length = 184355 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 153548 ggtggatgcagaacccatga 153529
>gb|AC113436.28| Pan troglodytes clone rp43-97f19, complete sequence Length = 166631 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 104423 ggtggatgcagaacccatga 104404
>gb|AC020760.6| Homo sapiens chromosome 16 clone RP11-151C19, complete sequence Length = 188872 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 82096 ggtggatgcagaacccatga 82115
>ref|XM_625516.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_550), partial mRNA Length = 7059 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aataattatccaaacttcac 52 |||||||||||||||||||| Sbjct: 981 aataattatccaaacttcac 1000
>gb|AC034151.6| Homo sapiens BAC clone RP11-168J1 from 2, complete sequence Length = 157666 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 72290 ggtggatgcagaacccatga 72271
>gb|AC128677.4| Homo sapiens BAC clone RP11-271A22 from 2, complete sequence Length = 158087 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 92883 ggtggatgcagaacccatga 92864
>gb|AC012640.12| Homo sapiens chromosome 5 clone CTD-2256P15, complete sequence Length = 145122 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gtggatgcagaacccatgag 230 |||||||||||||||||||| Sbjct: 39313 gtggatgcagaacccatgag 39294
>emb|BX546448.4| Human DNA sequence from clone RP11-509J10 on chromosome 22, complete sequence Length = 172149 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ggtggatgcagaacccatga 229 |||||||||||||||||||| Sbjct: 29112 ggtggatgcagaacccatga 29131
>dbj|AK106758.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-D09, full insert sequence Length = 3740 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 295 tccttgataaacaggaaggtcggcattgcctcaaca 330 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 432 tccttcataaacaggaatgttggcatagcctcaaca 397
>dbj|AK059385.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-G10, full insert sequence Length = 682 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 295 tccttgataaacaggaaggtcggcattgcctcaaca 330 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 401 tccttcataaacaggaatgttggcatagcctcaaca 366
>gb|AC153893.3| Mus musculus 10 BAC RP23-124O20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228194 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 tagacagaataattatccaaactt 49 ||||||||| |||||||||||||| Sbjct: 68010 tagacagaaaaattatccaaactt 68033
>dbj|AP006105.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT14C19, TM0190, complete sequence Length = 125299 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tcacaatagcaactgtagca 68 |||||||||||||||||||| Sbjct: 92184 tcacaatagcaactgtagca 92165
>dbj|AB053294.1| Oryza sativa (japonica cultivar-group) RTRXH2 mRNA for thioredoxin h, complete cds Length = 740 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 295 tccttgataaacaggaaggtcggcattgcctcaaca 330 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 402 tccttcataaacaggaatgttggcatagcctcaaca 367 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,064,293 Number of Sequences: 3902068 Number of extensions: 4064293 Number of successful extensions: 74122 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 73888 Number of HSP's gapped (non-prelim): 228 length of query: 478 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 456 effective length of database: 17,147,199,772 effective search space: 7819123096032 effective search space used: 7819123096032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)