ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21p05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
2gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
5ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative... 123 6e-25
6gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small n... 123 6e-25
7gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small n... 123 6e-25
8gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small n... 123 6e-25
9dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
10dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
11dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
12gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 88 3e-14
13gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 88 3e-14
14gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 88 3e-14
15gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternative... 88 3e-14
16gb|AY108570.1| Zea mays PCO063456 mRNA sequence 88 3e-14
17emb|BX936389.6| Zebrafish DNA sequence from clone CH211-178H11, ... 48 0.029
18emb|BX546453.8| Zebrafish DNA sequence from clone CH211-203G10 i... 44 0.46
19emb|BX469919.10| Zebrafish DNA sequence from clone DKEY-15J7 in ... 44 0.46
20emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chr... 42 1.8
21emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on... 42 1.8
22emb|CR847979.6| Zebrafish DNA sequence from clone CH211-195H14 i... 42 1.8
23emb|CR847883.10| Zebrafish DNA sequence from clone DKEYP-24H10 i... 42 1.8
24emb|CR627316.1| Homo sapiens genomic DNA; cDNA DKFZp686O11128 (f... 42 1.8
25emb|BX546480.9| Zebrafish DNA sequence from clone DKEY-175C11, c... 42 1.8
26emb|BX511072.8| Zebrafish DNA sequence from clone CH211-63A11 in... 42 1.8
27emb|BX908757.10| Zebrafish DNA sequence from clone DKEY-206L1 in... 42 1.8
28gb|AY170316.1| Porcine lymphotropic herpesvirus 3 isolate 489 lo... 42 1.8
29gb|AY170315.1| Porcine lymphotropic herpesvirus 3 isolate 1412 l... 42 1.8
30emb|BX649643.10| Zebrafish DNA sequence from clone CH211-125M10 ... 42 1.8
31emb|BX571854.11| Zebrafish DNA sequence from clone CH211-195O19 ... 42 1.8
32emb|AL953841.5| Zebrafish DNA sequence from clone DKEY-44G23 in ... 42 1.8
33ref|XM_482855.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.2
34ref|XM_507589.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.2
35ref|XM_507265.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.2
36gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, comp... 40 7.2
37emb|X14112.1|HE1CG Human herpesvirus 1 complete genome 40 7.2
38gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosom... 40 7.2
39dbj|AB252867.1| Human herpesvirus 1 UL34 gene for virion protein... 40 7.2
40gb|AC097511.1| Homo sapiens BAC clone RP11-393A12 from 4, comple... 40 7.2
41dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
42gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, comple... 40 7.2
43gb|AE009499.1| Brucella melitensis 16M chromosome I, section 56 ... 40 7.2
44gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosom... 40 7.2
45gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complet... 40 7.2
46gb|AC112229.4| Homo sapiens BAC clone RP13-1039J1 from 2, comple... 40 7.2
47dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
48dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
49ref|XM_557151.1| Anopheles gambiae str. PEST ENSANGP00000028277 ... 40 7.2
50ref|XM_316511.2| Anopheles gambiae str. PEST ENSANGP00000013488 ... 40 7.2
51dbj|AK105607.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
52dbj|AK102279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
53dbj|AK070501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
54emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in ... 40 7.2
55emb|BX897658.10| Zebrafish DNA sequence from clone CH211-13K12 i... 40 7.2
56emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chr... 40 7.2 
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0092N12, complete sequence
          Length = 109198

 Score =  135 bits (68), Expect = 2e-28
 Identities = 137/158 (86%), Gaps = 4/158 (2%)
 Strand = Plus / Minus

                                                                         
Query: 232   aaaacttactgcagtaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 290
             |||||||||||||| ||||||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 15486 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 15427

                                                                         
Query: 291   gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 347
             |||||||||||| || |||||||| || || ||||||||||||||||||||||||   ||
Sbjct: 15426 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 15367

                                                   
Query: 348   ttgtgcctgatagtactcatgctcatgtctctttgagc 385
             |||   ||||||||||||||||||||||| ||||||||
Sbjct: 15366 ttgcatctgatagtactcatgctcatgtcgctttgagc 15329
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score =  135 bits (68), Expect = 2e-28
 Identities = 137/158 (86%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 232    aaaacttactgcagtaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 290
              |||||||||||||| ||||||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127

                                                                          
Query: 291    gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 347
              |||||||||||| || |||||||| || || ||||||||||||||||||||||||   ||
Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187

                                                    
Query: 348    ttgtgcctgatagtactcatgctcatgtctctttgagc 385
              |||   ||||||||||||||||||||||| ||||||||
Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score =  135 bits (68), Expect = 2e-28
 Identities = 137/158 (86%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 232    aaaacttactgcagtaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 290
              |||||||||||||| ||||||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127

                                                                          
Query: 291    gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 347
              |||||||||||| || |||||||| || || ||||||||||||||||||||||||   ||
Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187

                                                    
Query: 348    ttgtgcctgatagtactcatgctcatgtctctttgagc 385
              |||   ||||||||||||||||||||||| ||||||||
Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  135 bits (68), Expect = 2e-28
 Identities = 137/158 (86%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 232    aaaacttactgcagtaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 290
              |||||||||||||| ||||||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 987065 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987124

                                                                          
Query: 291    gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 347
              |||||||||||| || |||||||| || || ||||||||||||||||||||||||   ||
Sbjct: 987125 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987184

                                                    
Query: 348    ttgtgcctgatagtactcatgctcatgtctctttgagc 385
              |||   ||||||||||||||||||||||| ||||||||
Sbjct: 987185 ttgcatctgatagtactcatgctcatgtcgctttgagc 987222
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>ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative U1 small nuclear
            ribonucleoprotein (OSJNBa0092N12.2), mRNA
          Length = 1476

 Score =  123 bits (62), Expect = 6e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 277  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 336
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395

                                                                
Query: 337  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 385
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343
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>gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K splice variant 2 mRNA, complete
            cds, alternatively spliced
          Length = 3284

 Score =  123 bits (62), Expect = 6e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 277  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 336
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 2924 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 2865

                                                                
Query: 337  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 385
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 2864 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2813
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>gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K splice variant 1 mRNA, complete
            cds, alternatively spliced
          Length = 3443

 Score =  123 bits (62), Expect = 6e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 277  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 336
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 3083 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3024

                                                                
Query: 337  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 385
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 3023 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2972
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>gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K mRNA, complete cds, alternatively
            spliced
          Length = 1815

 Score =  123 bits (62), Expect = 6e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 277  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 336
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 1455 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1396

                                                                
Query: 337  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 385
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344
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>dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113P16, full
            insert sequence
          Length = 3436

 Score =  123 bits (62), Expect = 6e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 277  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 336
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 3094 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3035

                                                                
Query: 337  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 385
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 3034 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2983
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>dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A09, full
            insert sequence
          Length = 1796

 Score =  123 bits (62), Expect = 6e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 277  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 336
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395

                                                                
Query: 337  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 385
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343
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>dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046L24, full
            insert sequence
          Length = 1798

 Score =  115 bits (58), Expect = 2e-22
 Identities = 99/112 (88%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 277  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 336
            |||||||||||||||||||||||| | || |||||||| || || |||||||||||||||
Sbjct: 1455 gcttggtgatactggtagtcacctccatcatatgcctcgccctcttcagggccttcaggt 1396

                                                                
Query: 337  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 385
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344
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>gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 3299

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                
Query: 281  ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 332
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 3148 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 3097
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>gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 3463

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                
Query: 281  ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 332
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 3312 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 3261
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>gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 1647

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                
Query: 281  ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 332
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 1496 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 1445
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>gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternatively spliced
          Length = 5550

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                
Query: 281  ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 332
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 4751 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 4700
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>gb|AY108570.1| Zea mays PCO063456 mRNA sequence
          Length = 1603

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                
Query: 281  ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 332
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 1214 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 1163
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>emb|BX936389.6| Zebrafish DNA sequence from clone CH211-178H11, complete sequence
          Length = 110830

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 1     tatgtntacaaagacgaaaacaaagga 27
             ||||| |||||||||||||||||||||
Sbjct: 90660 tatgtttacaaagacgaaaacaaagga 90686
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>emb|BX546453.8| Zebrafish DNA sequence from clone CH211-203G10 in linkage group 24,
              complete sequence
          Length = 160383

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 7      tacaaagacgaaaacaaaggag 28
              ||||||||||||||||||||||
Sbjct: 118441 tacaaagacgaaaacaaaggag 118420
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>emb|BX469919.10| Zebrafish DNA sequence from clone DKEY-15J7 in linkage group 16, complete
              sequence
          Length = 219865

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 7      tacaaagacgaaaacaaaggag 28
              ||||||||||||||||||||||
Sbjct: 179011 tacaaagacgaaaacaaaggag 179032
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>emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chromosome 13 Contains a CpG
              island, complete sequence
          Length = 174615

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     acaaaggagtacagagtgatt 40
              |||||||||||||||||||||
Sbjct: 143119 acaaaggagtacagagtgatt 143099
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>emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on chromosome 22q13.1-13.2,
             complete sequence
          Length = 115932

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 462   agagccataatgcttcccata 482
             |||||||||||||||||||||
Sbjct: 81761 agagccataatgcttcccata 81741
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>emb|CR847979.6| Zebrafish DNA sequence from clone CH211-195H14 in linkage group 15,
             complete sequence
          Length = 117096

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     tacaaagacgaaaacaaagga 27
             |||||||||||||||||||||
Sbjct: 93201 tacaaagacgaaaacaaagga 93221
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>emb|CR847883.10| Zebrafish DNA sequence from clone DKEYP-24H10 in linkage group 1,
             complete sequence
          Length = 83811

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     acaaagacgaaaacaaaggag 28
             |||||||||||||||||||||
Sbjct: 19896 acaaagacgaaaacaaaggag 19876
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>emb|CR627316.1| Homo sapiens genomic DNA; cDNA DKFZp686O11128 (from clone
            DKFZp686O11128)
          Length = 4350

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 462  agagccataatgcttcccata 482
            |||||||||||||||||||||
Sbjct: 2627 agagccataatgcttcccata 2607
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>emb|BX546480.9| Zebrafish DNA sequence from clone DKEY-175C11, complete sequence
          Length = 203056

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     tacaaagacgaaaacaaagga 27
             |||||||||||||||||||||
Sbjct: 89004 tacaaagacgaaaacaaagga 89024
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>emb|BX511072.8| Zebrafish DNA sequence from clone CH211-63A11 in linkage group 12,
             complete sequence
          Length = 165932

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tacaaagacgaaaacaaagga 27
             |||||||||||||||||||||
Sbjct: 19648 tacaaagacgaaaacaaagga 19628
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>emb|BX908757.10| Zebrafish DNA sequence from clone DKEY-206L1 in linkage group 22,
              complete sequence
          Length = 143845

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 7      tacaaagacgaaaacaaagga 27
              |||||||||||||||||||||
Sbjct: 123754 tacaaagacgaaaacaaagga 123734
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>gb|AY170316.1| Porcine lymphotropic herpesvirus 3 isolate 489 long unique region,
            partial sequence
          Length = 60326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 65   ctggaataaaacaagacatca 85
            |||||||||||||||||||||
Sbjct: 2075 ctggaataaaacaagacatca 2095
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>gb|AY170315.1| Porcine lymphotropic herpesvirus 3 isolate 1412 long unique region,
            partial sequence
          Length = 25457

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 65   ctggaataaaacaagacatca 85
            |||||||||||||||||||||
Sbjct: 2095 ctggaataaaacaagacatca 2115
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>emb|BX649643.10| Zebrafish DNA sequence from clone CH211-125M10 in linkage group 22,
              complete sequence
          Length = 177325

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      tacaaagacgaaaacaaagga 27
              |||||||||||||||||||||
Sbjct: 110623 tacaaagacgaaaacaaagga 110643
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>emb|BX571854.11| Zebrafish DNA sequence from clone CH211-195O19 in linkage group 20,
              complete sequence
          Length = 194209

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      tacaaagacgaaaacaaagga 27
              |||||||||||||||||||||
Sbjct: 140386 tacaaagacgaaaacaaagga 140406
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>emb|AL953841.5| Zebrafish DNA sequence from clone DKEY-44G23 in linkage group 22,
             complete sequence
          Length = 219929

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tacaaagacgaaaacaaagga 27
             |||||||||||||||||||||
Sbjct: 25451 tacaaagacgaaaacaaagga 25431
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>ref|XM_482855.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1787

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 tcatggccatgcccatgccc 413
           ||||||||||||||||||||
Sbjct: 341 tcatggccatgcccatgccc 322
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>ref|XM_507589.1| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.41 mRNA
          Length = 1972

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 tcatggccatgcccatgccc 413
           ||||||||||||||||||||
Sbjct: 344 tcatggccatgcccatgccc 325
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>ref|XM_507265.2| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.41 mRNA
          Length = 2555

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 tcatggccatgcccatgccc 413
           ||||||||||||||||||||
Sbjct: 345 tcatggccatgcccatgccc 326
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>gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, complete sequence
          Length = 289751

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 252  agcttcagtcttttgctcttctgc 275
            |||| |||||||||||||||||||
Sbjct: 5837 agctccagtcttttgctcttctgc 5860
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>emb|X14112.1|HE1CG Human herpesvirus 1 complete genome
          Length = 152261

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   ctttcagtttcatggccatg 404
             ||||||||||||||||||||
Sbjct: 69785 ctttcagtttcatggccatg 69804
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>gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosome 15, complete
             sequence
          Length = 165103

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 494   tcctgtcatgctttggctca 513
             ||||||||||||||||||||
Sbjct: 41674 tcctgtcatgctttggctca 41655
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>dbj|AB252867.1| Human herpesvirus 1 UL34 gene for virion protein, complete cds
          Length = 828

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 385 ctttcagtttcatggccatg 404
           ||||||||||||||||||||
Sbjct: 153 ctttcagtttcatggccatg 172
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>gb|AC097511.1| Homo sapiens BAC clone RP11-393A12 from 4, complete sequence
          Length = 195252

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     tggaataaaacaagacatca 85
              ||||||||||||||||||||
Sbjct: 138541 tggaataaaacaagacatca 138560
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 394      tcatggccatgcccatgccc 413
                ||||||||||||||||||||
Sbjct: 22987384 tcatggccatgcccatgccc 22987403
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>gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, complete sequence
          Length = 175222

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   ttgtgttgctcatgctggtt 461
             ||||||||||||||||||||
Sbjct: 71056 ttgtgttgctcatgctggtt 71075
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>gb|AE009499.1| Brucella melitensis 16M chromosome I, section 56 of 195 of the
            complete sequence
          Length = 10455

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 387  ttcagtttcatggccatgcc 406
            ||||||||||||||||||||
Sbjct: 3734 ttcagtttcatggccatgcc 3715
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>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete
             sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 494   tcctgtcatgctttggctca 513
             ||||||||||||||||||||
Sbjct: 13371 tcctgtcatgctttggctca 13390
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>gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complete sequence
          Length = 155702

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 442  ttgtgttgctcatgctggtt 461
            ||||||||||||||||||||
Sbjct: 9527 ttgtgttgctcatgctggtt 9546
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>gb|AC112229.4| Homo sapiens BAC clone RP13-1039J1 from 2, complete sequence
          Length = 154279

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   ttgtgttgctcatgctggtt 461
             ||||||||||||||||||||
Sbjct: 17560 ttgtgttgctcatgctggtt 17541
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>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0104B02
          Length = 169588

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    tcatggccatgcccatgccc 413
              ||||||||||||||||||||
Sbjct: 161222 tcatggccatgcccatgccc 161241
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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 394   tcatggccatgcccatgccc 413
             ||||||||||||||||||||
Sbjct: 47112 tcatggccatgcccatgccc 47131
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>ref|XM_557151.1| Anopheles gambiae str. PEST ENSANGP00000028277 (ENSANGG00000010999),
            partial mRNA
          Length = 1614

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  tcagtcttttgctcttctgc 275
            ||||||||||||||||||||
Sbjct: 1565 tcagtcttttgctcttctgc 1546
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>ref|XM_316511.2| Anopheles gambiae str. PEST ENSANGP00000013488 (ENSANGG00000010999),
            partial mRNA
          Length = 2526

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  tcagtcttttgctcttctgc 275
            ||||||||||||||||||||
Sbjct: 2219 tcagtcttttgctcttctgc 2200
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>dbj|AK105607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B01, full
           insert sequence
          Length = 1786

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 tcatggccatgcccatgccc 413
           ||||||||||||||||||||
Sbjct: 341 tcatggccatgcccatgccc 322
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>dbj|AK102279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089E10, full
           insert sequence
          Length = 1972

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 tcatggccatgcccatgccc 413
           ||||||||||||||||||||
Sbjct: 344 tcatggccatgcccatgccc 325
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>dbj|AK070501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054A11, full
           insert sequence
          Length = 2555

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 tcatggccatgcccatgccc 413
           ||||||||||||||||||||
Sbjct: 345 tcatggccatgcccatgccc 326
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>emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in linkage group 18,
             complete sequence
          Length = 94961

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   ttgtgttgctcatgctggtt 461
             ||||||||||||||||||||
Sbjct: 14634 ttgtgttgctcatgctggtt 14615
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>emb|BX897658.10| Zebrafish DNA sequence from clone CH211-13K12 in linkage group 18,
              complete sequence
          Length = 160335

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      acaaagacgaaaacaaagga 27
              ||||||||||||||||||||
Sbjct: 129801 acaaagacgaaaacaaagga 129820
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>emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chromosome 12, complete
              sequence
          Length = 211056

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 252    agcttcagtcttttgctcttctgc 275
              |||| |||||||||||||||||||
Sbjct: 101564 agctccagtcttttgctcttctgc 101541


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,290,058
Number of Sequences: 3902068
Number of extensions: 5290058
Number of successful extensions: 130781
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130554
Number of HSP's gapped (non-prelim): 212
length of query: 529
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 506
effective length of database: 17,143,297,704
effective search space: 8674508638224
effective search space used: 8674508638224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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