ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21p04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 112 1e-24
2CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 85 2e-16
314KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 82 2e-15
4HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 50 8e-06

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score =  112 bits (279), Expect = 1e-24
 Identities = 50/84 (59%), Positives = 61/84 (72%)
 Frame = -2

Query: 369 CPIDTLXLLGCVDALDGLLHALIGSNASDKCCPLLSGVADLXAALCLCTTIKLKALNINL 190
           CPID L L  CVD L GL+H  IG +A   CCPLL G+ DL AA+CLCTTI+LK LNIN+
Sbjct: 261 CPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINI 320

Query: 189 VLPXAIEVLVNQCGKTVPDDFTVP 118
           +LP A++VL++ CGK  P DF  P
Sbjct: 321 ILPIALQVLIDDCGKYPPKDFKCP 344



 Score = 34.7 bits (78), Expect = 0.28
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -1

Query: 685 AFCXCTTXELKALNINFVFPIAI 617
           A C CTT  LK LNIN + PIA+
Sbjct: 304 AICLCTTIRLKLLNINIILPIAL 326



to top

>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 41/86 (47%), Positives = 55/86 (63%)
 Frame = -2

Query: 375 GKCPIDTLXLLGCVDALDGLLHALIGSNASDKCCPLLSGVADLXAALCLCTTIKLKALNI 196
           G+CPID L L  C   L GL+   +G    ++CCPLL G+ DL AALCLCT IK   L I
Sbjct: 46  GRCPIDALKLKVCAKVL-GLVK--VGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGI 102

Query: 195 NLVLPXAIEVLVNQCGKTVPDDFTVP 118
           +L +P ++  ++N CG+  P+DFT P
Sbjct: 103 HLNVPLSLNFILNNCGRICPEDFTCP 128



to top

>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 40/83 (48%), Positives = 53/83 (63%)
 Frame = -2

Query: 375 GKCPIDTLXLLGCVDALDGLLHALIGSNASDKCCPLLSGVADLXAALCLCTTIKLKALNI 196
           GKCP D L L  C D L+ + + +IGS  +  CC LL G+ +L AA+CLCT IK   L  
Sbjct: 52  GKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGK 111

Query: 195 NLVLPXAIEVLVNQCGKTVPDDF 127
           NL LP A+ +++N CGK VP+ F
Sbjct: 112 NLNLPIALSLVLNNCGKQVPNGF 134



to top

>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 27/74 (36%), Positives = 44/74 (59%)
 Frame = -2

Query: 339 CVDALDGLLHALIGSNASDKCCPLLSGVADLXAALCLCTTIKLKALNINLVLPXAIEVLV 160
           C++ L G L  +      D CC L+ G+ D+ A +CLC  I+L+AL I L L   +++++
Sbjct: 14  CLNILGGSLGTV------DDCCALIGGLGDIEAIVCLC--IQLRALGI-LNLNRNLQLIL 64

Query: 159 NQCGKTVPDDFTVP 118
           N CG++ P + T P
Sbjct: 65  NSCGRSYPSNATCP 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,879,028
Number of Sequences: 219361
Number of extensions: 922334
Number of successful extensions: 2130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2129
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top