ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22e07 |
|---|---|
| Clone Library Name | barley_pub |
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/26 (76%), Positives = 21/26 (80%) Frame = -1 Query: 204 MRQAIEAMNXQDXDGRNITVXEAQSR 127 MR AIE MN Q+ DGRNITV EAQSR Sbjct: 60 MRDAIEGMNGQELDGRNITVNEAQSR 85
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/26 (73%), Positives = 21/26 (80%) Frame = -1 Query: 204 MRQAIEAMNXQDXDGRNITVXEAQSR 127 MR AIE MN ++ DGRNITV EAQSR Sbjct: 41 MRSAIEGMNGKELDGRNITVNEAQSR 66
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/26 (73%), Positives = 21/26 (80%) Frame = -1 Query: 204 MRQAIEAMNXQDXDGRNITVXEAQSR 127 M+ AIE MN QD DGR+ITV EAQSR Sbjct: 62 MKDAIEGMNGQDLDGRSITVNEAQSR 87
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/26 (73%), Positives = 21/26 (80%) Frame = -1 Query: 204 MRQAIEAMNXQDXDGRNITVXEAQSR 127 M+ AIE MN QD DGR+ITV EAQSR Sbjct: 62 MKDAIEGMNGQDLDGRSITVNEAQSR 87
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/26 (73%), Positives = 21/26 (80%) Frame = -1 Query: 204 MRQAIEAMNXQDXDGRNITVXEAQSR 127 M+ AIE MN QD DGR+ITV EAQSR Sbjct: 62 MKDAIEGMNGQDLDGRSITVNEAQSR 87
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 36.6 bits (83), Expect = 0.018 Identities = 18/26 (69%), Positives = 20/26 (76%) Frame = -1 Query: 204 MRQAIEAMNXQDXDGRNITVXEAQSR 127 MR AIE MN ++ DGR ITV EAQSR Sbjct: 60 MRDAIEEMNGKELDGRVITVNEAQSR 85
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 35.8 bits (81), Expect = 0.031 Identities = 17/26 (65%), Positives = 20/26 (76%) Frame = -1 Query: 204 MRQAIEAMNXQDXDGRNITVXEAQSR 127 M AIE MN ++ DGRNITV +AQSR Sbjct: 62 MLDAIENMNGKELDGRNITVNQAQSR 87
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 35.8 bits (81), Expect = 0.031 Identities = 17/26 (65%), Positives = 20/26 (76%) Frame = -1 Query: 204 MRQAIEAMNXQDXDGRNITVXEAQSR 127 M AIE MN ++ DGRNITV +AQSR Sbjct: 62 MLDAIENMNGKELDGRNITVNQAQSR 87
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 35.4 bits (80), Expect = 0.041 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = -1 Query: 204 MRQAIEAMNXQDXDGRNITVXEAQSR 127 M+ AI+ MN ++ DGR ITV EAQSR Sbjct: 60 MKDAIDEMNGKELDGRTITVNEAQSR 85
>PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) (Fragment) Length = 112 Score = 30.4 bits (67), Expect = 1.3 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -1 Query: 204 MRQAIEAMNXQDXDGRNIT 148 MR AIE MN ++ DGRNIT Sbjct: 2 MRNAIEGMNGKELDGRNIT 20 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,096,675 Number of Sequences: 219361 Number of extensions: 114537 Number of successful extensions: 244 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 244 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 244 length of database: 80,573,946 effective HSP length: 44 effective length of database: 70,922,062 effective search space used: 1702129488 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
