ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C97B2_SOYBN (O48921) Cytochrome P450 97B2 (EC 1.14.-.-) 32 0.82
2VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (... 31 1.8
3RHRE_PEA (Q9S8P4) Rhicadhesin receptor precursor (Germin-like pr... 30 5.3
4FA53B_HUMAN (Q14153) Protein FAM53B 29 7.0
5CDC25_YEAST (P04821) Cell division control protein 25 29 7.0
6ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2.... 29 9.1
7DEAF1_MOUSE (Q9Z1T5) Deformed epidermal autoregulatory factor 1 ... 29 9.1
8DEAF1_RAT (O88450) Deformed epidermal autoregulatory factor 1 ho... 29 9.1
9DEAF1_HUMAN (O75398) Deformed epidermal autoregulatory factor 1 ... 29 9.1

>C97B2_SOYBN (O48921) Cytochrome P450 97B2 (EC 1.14.-.-)|
          Length = 576

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = +3

Query: 120 STLLTSRETNLHSRRKSGAKVFADHLSLSLPVMLSS 227
           STL T  + NLHSR  S    F  H SLS P  +SS
Sbjct: 7   STLSTVTDANLHSRFHSRLVPFTHHFSLSQPKRISS 42



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>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major|
            vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I)
            (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II)
            (LVII); YGP40]
          Length = 1850

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
 Frame = +3

Query: 54   SSAISKEHMLQKAETKNWQGNKSTLLTSRETNLHSRRKSGAKVFADHLSLSLPVMLSSAW 233
            SS+ S  H      + +  G+ S+  +SR  + HS       +  D  S S   +LS  W
Sbjct: 1262 SSSKSSSHHSHSHHSGHLNGSSSSSSSSRSVSHHSHEHHSGHLEDDSSSSSSSSVLSKIW 1321

Query: 234  A*LRSCSMKLEHLMRQELAEA*KGGERHLSR--AQRSEH 344
                    +     RQE  +    G+R  SR  + RS H
Sbjct: 1322 GRHEIYQYRFRSAHRQEFPKRKLPGDRATSRYSSTRSSH 1360



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>RHRE_PEA (Q9S8P4) Rhicadhesin receptor precursor (Germin-like protein)|
          Length = 217

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 438 LLQSCATFAAFSCIMEGLNKQQAAMAHTLGGNALTFAHGKGGVLPPFTLP 289
           L++  AT   F  ++ G N Q+    +TLG +     +  GG+ PP T P
Sbjct: 61  LVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHP 110



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>FA53B_HUMAN (Q14153) Protein FAM53B|
          Length = 422

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
 Frame = -3

Query: 438 LLQSCATFAAFSCIMEGLNK--QQAAMA----HTLGGNALTFAHGKGGVLP-----PFTL 292
           + Q+C TF++ SC+  G      Q+  A    +T    AL  A G GG  P     P  L
Sbjct: 300 MAQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNTRAWTALLSASGPGGRTPAGTPVPEPL 359

Query: 291 PPILD 277
           PP  D
Sbjct: 360 PPSFD 364



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>CDC25_YEAST (P04821) Cell division control protein 25|
          Length = 1589

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 30  TPEISGFLSSAISKEHMLQKAETKNWQGNKSTLLTSRETNLH-SRRKSGAKVFADHLSLS 206
           TP+ S F S+A   + M + A+  + + N + ++ + ETNL  S  K+G  + A+     
Sbjct: 214 TPQSSNFNSNASLSQDMTKSADGSS-EMNTNAIMNNNETNLQTSGEKAGPPLVAEETIKI 272

Query: 207 LPV 215
           LP+
Sbjct: 273 LPL 275



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>ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8)
          Length = 762

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 327 HGKGGVLPPFTLPPILDASDALASCCKTL 241
           HG GG+ PP+   P L+ +DA +   ++L
Sbjct: 403 HGPGGLRPPYPPSPPLNTTDAFSGALRSL 431



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>DEAF1_MOUSE (Q9Z1T5) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR)
          Length = 566

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 397 NGGAEQAAGCNGSHPRRECSDLCARERWR 311
           N G E  + C G H    CS  C R+ W+
Sbjct: 507 NCGREAMSECTGCHKVNYCSTFCQRKDWK 535



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>DEAF1_RAT (O88450) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR) (Suppressin)
          Length = 565

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 397 NGGAEQAAGCNGSHPRRECSDLCARERWR 311
           N G E  + C G H    CS  C R+ W+
Sbjct: 506 NCGREAMSECTGCHKVNYCSTFCQRKDWK 534



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>DEAF1_HUMAN (O75398) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR) (Suppressin) (Zinc finger MYND domain-containing
           protein 5)
          Length = 565

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 397 NGGAEQAAGCNGSHPRRECSDLCARERWR 311
           N G E  + C G H    CS  C R+ W+
Sbjct: 506 NCGREAMSECTGCHKVNYCSTFCQRKDWK 534


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,187,048
Number of Sequences: 219361
Number of extensions: 1508204
Number of successful extensions: 4268
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4267
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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