ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22e04 |
|---|---|
| Clone Library Name | barley_pub |
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 226 bits (575), Expect = 5e-59 Identities = 105/136 (77%), Positives = 117/136 (86%) Frame = -2 Query: 588 RCLPXIDTNFTVTSKANDEEGDFAELYMFKWXXXXXXXXXXXXINMVGVVAGTSYAINSG 409 + L IDTNFTVTSKA+DE+GDFAELY+FKW +N+VGVVAG SYAINSG Sbjct: 930 KVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSG 989 Query: 408 YQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPF 229 YQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV+VW+VLLASIFSLLWVR+DPF Sbjct: 990 YQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPF 1049 Query: 228 TTRLAGPNIQTCGINC 181 T+R+ GP+I CGINC Sbjct: 1050 TSRVTGPDILECGINC 1065
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 201 bits (511), Expect = 1e-51 Identities = 96/136 (70%), Positives = 108/136 (79%) Frame = -2 Query: 588 RCLPXIDTNFTVTSKANDEEGDFAELYMFKWXXXXXXXXXXXXINMVGVVAGTSYAINSG 409 + L IDTNFTVTSKA D++ DF ELY FKW IN+VGVVAG S AIN+G Sbjct: 892 KILAGIDTNFTVTSKATDDD-DFGELYAFKWTTLLIPPTTVLIINIVGVVAGISDAINNG 950 Query: 408 YQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPF 229 YQSWGPLFGKLFF+FWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLLWVR+DPF Sbjct: 951 YQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPF 1010 Query: 228 TTRLAGPNIQTCGINC 181 + GP+ CGINC Sbjct: 1011 VLKTKGPDTSKCGINC 1026
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 195 bits (495), Expect(2) = 2e-49 Identities = 92/128 (71%), Positives = 104/128 (81%) Frame = -2 Query: 588 RCLPXIDTNFTVTSKANDEEGDFAELYMFKWXXXXXXXXXXXXINMVGVVAGTSYAINSG 409 + L IDTNFTVTSKA DE+GDFAELY+FKW +N++G+VAG SYA+NSG Sbjct: 945 KVLAGIDTNFTVTSKATDEDGDFAELYIFKWTALLIPPTTVLLVNLIGIVAGVSYAVNSG 1004 Query: 408 YQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPF 229 YQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVW+VLLASIFSLLWVR++PF Sbjct: 1005 YQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPF 1064 Query: 228 TTRLAGPN 205 A PN Sbjct: 1065 VD--ANPN 1070 Score = 20.8 bits (42), Expect(2) = 2e-49 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -1 Query: 604 FQGLLKVLA 578 FQGLLKVLA Sbjct: 940 FQGLLKVLA 948
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 193 bits (491), Expect = 3e-49 Identities = 89/132 (67%), Positives = 107/132 (81%), Gaps = 1/132 (0%) Frame = -2 Query: 573 IDTNFTVTSK-ANDEEGDFAELYMFKWXXXXXXXXXXXXINMVGVVAGTSYAINSGYQSW 397 +DTNFTVTSK A+DE +F +LY+FKW +NMVGVVAG S AIN+GY SW Sbjct: 918 VDTNFTVTSKGASDEADEFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSW 977 Query: 396 GPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRL 217 GPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W++LLASIFSL+WVR+DPF + Sbjct: 978 GPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQ 1037 Query: 216 AGPNIQTCGINC 181 GP ++ CG++C Sbjct: 1038 TGPLLKQCGVDC 1049
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 190 bits (482), Expect = 3e-48 Identities = 87/117 (74%), Positives = 99/117 (84%) Frame = -2 Query: 573 IDTNFTVTSKANDEEGDFAELYMFKWXXXXXXXXXXXXINMVGVVAGTSYAINSGYQSWG 394 IDTNFTVTSKA+DE+GDFAELY+FKW +N+VG+VAG SYAINSGYQSWG Sbjct: 937 IDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTILLVNLVGIVAGVSYAINSGYQSWG 996 Query: 393 PLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTT 223 PL GKL FAFWV+ HLYPFLKGL+GRQNRTPTIVIVW+ LLASIFSLLWVR++PF + Sbjct: 997 PLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVS 1053
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 175 bits (443), Expect(2) = 2e-43 Identities = 81/136 (59%), Positives = 106/136 (77%) Frame = -2 Query: 588 RCLPXIDTNFTVTSKANDEEGDFAELYMFKWXXXXXXXXXXXXINMVGVVAGTSYAINSG 409 + L + TNFTVTSKA D+ G+F+ELY+FKW IN+VGV+ G S AIN+G Sbjct: 953 KVLAGVSTNFTVTSKAADD-GEFSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDAINNG 1011 Query: 408 YQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPF 229 Y SWGPLFG+LFFA WVIVHLYPFLKGL+G+Q+R PTI++VW++LLASI +LLWVRV+PF Sbjct: 1012 YDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVNPF 1071 Query: 228 TTRLAGPNIQTCGINC 181 ++ GP ++ CG++C Sbjct: 1072 VSK-DGPVLEICGLDC 1086 Score = 20.8 bits (42), Expect(2) = 2e-43 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -1 Query: 604 FQGLLKVLA 578 FQGLLKVLA Sbjct: 948 FQGLLKVLA 956
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 174 bits (441), Expect(2) = 3e-43 Identities = 79/136 (58%), Positives = 107/136 (78%) Frame = -2 Query: 588 RCLPXIDTNFTVTSKANDEEGDFAELYMFKWXXXXXXXXXXXXINMVGVVAGTSYAINSG 409 + L ++TNFTVTSKA D+ G+F+ELY+FKW IN++GV+ G S AI++G Sbjct: 935 KVLAGVETNFTVTSKAADD-GEFSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAISNG 993 Query: 408 YQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPF 229 Y SWGPLFG+LFFAFWVI+HLYPFLKGL+G+Q+R PTI++VW++LLASI +LLWVRV+PF Sbjct: 994 YDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPF 1053 Query: 228 TTRLAGPNIQTCGINC 181 + GP ++ CG++C Sbjct: 1054 VAK-GGPILEICGLDC 1068 Score = 20.8 bits (42), Expect(2) = 3e-43 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -1 Query: 604 FQGLLKVLA 578 FQGLLKVLA Sbjct: 930 FQGLLKVLA 938
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 174 bits (440), Expect(2) = 4e-43 Identities = 78/136 (57%), Positives = 106/136 (77%) Frame = -2 Query: 588 RCLPXIDTNFTVTSKANDEEGDFAELYMFKWXXXXXXXXXXXXINMVGVVAGTSYAINSG 409 + L +DTNFTVTSKA D+ G+F++LY+FKW IN++GV+ G S AI++G Sbjct: 950 KVLAGVDTNFTVTSKAADD-GEFSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAISNG 1008 Query: 408 YQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPF 229 Y SWGPLFG+LFFA WVI+HLYPFLKGL+G+Q+R PTI++VW++LLASI +LLWVRV+PF Sbjct: 1009 YDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPF 1068 Query: 228 TTRLAGPNIQTCGINC 181 + GP ++ CG++C Sbjct: 1069 VAK-GGPILEICGLDC 1083 Score = 20.8 bits (42), Expect(2) = 4e-43 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -1 Query: 604 FQGLLKVLA 578 FQGLLKVLA Sbjct: 945 FQGLLKVLA 953
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 172 bits (435), Expect(2) = 1e-42 Identities = 78/136 (57%), Positives = 105/136 (77%) Frame = -2 Query: 588 RCLPXIDTNFTVTSKANDEEGDFAELYMFKWXXXXXXXXXXXXINMVGVVAGTSYAINSG 409 + L ++TNFTVTSKA D+ G F+ELY+FKW IN++GV+ G S AI++G Sbjct: 949 KVLAGVNTNFTVTSKAADD-GAFSELYIFKWTTLLIPPTTLLIINIIGVIVGVSDAISNG 1007 Query: 408 YQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPF 229 Y SWGPLFG+LFFA WVIVHLYPFLKG++G+Q++ PTI++VW++LLASI +LLWVRV+PF Sbjct: 1008 YDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVNPF 1067 Query: 228 TTRLAGPNIQTCGINC 181 + GP ++ CG+NC Sbjct: 1068 VAK-GGPVLEICGLNC 1082 Score = 20.8 bits (42), Expect(2) = 1e-42 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -1 Query: 604 FQGLLKVLA 578 FQGLLKVLA Sbjct: 944 FQGLLKVLA 952
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 170 bits (431), Expect = 3e-42 Identities = 82/141 (58%), Positives = 106/141 (75%) Frame = -2 Query: 603 FRVF*RCLPXIDTNFTVTSKANDEEGDFAELYMFKWXXXXXXXXXXXXINMVGVVAGTSY 424 F+ F + L +DTNFTVTSK D+ +F ELY+ KW IN+VGVVAG S Sbjct: 844 FQGFLKMLAGLDTNFTVTSKTADDL-EFGELYIVKWTTLLIPPTSLLIINLVGVVAGFSD 902 Query: 423 AINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWV 244 A+N GY++WGPLFGK+FFAFWVI+HLYPFLKGLMGRQNRTPTIVI+W++LLAS+FSL+WV Sbjct: 903 ALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWV 962 Query: 243 RVDPFTTRLAGPNIQTCGINC 181 R++PF ++ + + +NC Sbjct: 963 RINPFVSK---TDTTSLSLNC 980
>CI090_CHICK (Q5ZI27) Protein C9orf90 homolog| Length = 330 Score = 30.8 bits (68), Expect = 3.2 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = -1 Query: 406 PILGAALREALLCLLGDCSLIPLPQGSYGQAKPHTDDCHRL 284 P++ +++ + LLG+ ++I LP G G + D HRL Sbjct: 120 PVILTPMQQRICNLLGEATIISLPSGDCGAGRRDRDPHHRL 160
>NOLA2_BOVIN (Q5E950) H/ACA ribonucleoprotein complex subunit 2 (Nucleolar| protein family A member 2) Length = 153 Score = 29.6 bits (65), Expect = 7.0 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Frame = -3 Query: 254 CCGFVLIHSLHVSLAQISKPVAS--TARKMGDCRDRKYNSDRLTTRGARENLCLGLRITT 81 CCG H L V+L I++P+AS RK+ C +K + RG +E + I Sbjct: 18 CCGERTYHELLVNLNPIAQPLASRRLTRKLYKC-IKKAVKQKQIRRGVKE---VQKFINK 73 Query: 80 FEK-VVKIAKTHL*IDVIDHLP 18 EK ++ +A L I+V HLP Sbjct: 74 GEKGIMVLAGDTLPIEVYCHLP 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,608,979 Number of Sequences: 219361 Number of extensions: 1631380 Number of successful extensions: 3886 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3878 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
