ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22d23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479609.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3465 Score = 143 bits (72), Expect = 6e-31 Identities = 303/380 (79%) Strand = Plus / Minus Query: 127 atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 186 |||| |||||| ||| |||| || || |||||||||||||| |||||| ||||||||| Sbjct: 3302 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 3243 Query: 187 agaaacgctggctctcggccgtcacaggcatggcaacaatggctaggaaaaggaaaaggt 246 ||||| ||||| || | || |||||||||||| |||||||||||| | |||| ||| Sbjct: 3242 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 3183 Query: 247 gttgcaacaaccctatccttgttgtgcgcaatcccggacaacgctaagatggtgtgtgtc 306 || ||||| ||||| |||||| |||||||| |||| |||||||| |||||||| Sbjct: 3182 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 3123 Query: 307 gctcgccgtgctacgttcgtgaaagaagattgatccaatggggaccgggcacaaatgtgc 366 |||| |||||| || ||| ||||| ||||||| ||||||||||| | ||||| || | Sbjct: 3122 gctctccgtgcaacattcttgaaatcagattgacccaatggggactgagcacacattagt 3063 Query: 367 ttgatgctcttcttgacaataggaatcagctggtccttggcatttgctacttctcggaaa 426 |||| | || |||||||||||||||||||||| ||||| ||| | || || | ||||| Sbjct: 3062 ttgaggttcctcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaa 3003 Query: 427 ttgcttccaccctcatcagtgcattgattaagattacttgcagactgaacaaattgtgag 486 |||||||||||| ||| |||| || | ||||| ||||| | ||||||||| |||| Sbjct: 3002 ttgcttccacccccataggtgcgttcaataagaccccttgctggctgaacaaaagatgag 2943 Query: 487 ctactctgctggctctgcat 506 |||||||||||| ||||||| Sbjct: 2942 ctactctgctggttctgcat 2923 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Minus Query: 18 gtataatctttccaactgtctataattgaaagaatgacaccaat 61 ||||||||||| | |||| ||||||||||||||||||| |||| Sbjct: 3404 gtataatcttttgatctgtttataattgaaagaatgacaacaat 3361
>dbj|AK099674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069F21, full insert sequence Length = 3465 Score = 127 bits (64), Expect = 4e-26 Identities = 301/380 (79%) Strand = Plus / Minus Query: 127 atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 186 |||| |||||| ||| |||| || || |||||||||||||| |||||| ||||||||| Sbjct: 3302 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 3243 Query: 187 agaaacgctggctctcggccgtcacaggcatggcaacaatggctaggaaaaggaaaaggt 246 ||||| ||||| || | || |||||||||||| |||||||||||| | |||| ||| Sbjct: 3242 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 3183 Query: 247 gttgcaacaaccctatccttgttgtgcgcaatcccggacaacgctaagatggtgtgtgtc 306 || ||||| ||||| |||||| |||||||| |||| |||||||| |||||||| Sbjct: 3182 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 3123 Query: 307 gctcgccgtgctacgttcgtgaaagaagattgatccaatggggaccgggcacaaatgtgc 366 |||| |||||| || ||| ||||| ||||||| |||||| |||| | | ||| || | Sbjct: 3122 gctctccgtgcaacattcttgaaatcagattgacccaatgcggactgagtacacattagt 3063 Query: 367 ttgatgctcttcttgacaataggaatcagctggtccttggcatttgctacttctcggaaa 426 |||| | || |||||||||||||||||||||| ||||| ||| | || || | ||||| Sbjct: 3062 ttgaggttcctcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaa 3003 Query: 427 ttgcttccaccctcatcagtgcattgattaagattacttgcagactgaacaaattgtgag 486 |||||||||||| ||| |||| || | ||||| ||||| | ||||||||| |||| Sbjct: 3002 ttgcttccacccccataggtgcgttcaataagaccccttgctggctgaacaaaagatgag 2943 Query: 487 ctactctgctggctctgcat 506 |||||||||||| ||||||| Sbjct: 2942 ctactctgctggttctgcat 2923 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Minus Query: 18 gtataatctttccaactgtctataattgaaagaatgacaccaat 61 ||||||||||| | |||| ||||||||||||||||||| |||| Sbjct: 3404 gtataatcttttgatctgtttataattgaaagaatgacaacaat 3361
>dbj|AK062111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B09, full insert sequence Length = 499 Score = 127 bits (64), Expect = 4e-26 Identities = 250/312 (80%) Strand = Plus / Minus Query: 127 atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 186 |||| |||||| ||| |||| || || |||||||||||||| |||||| ||||||||| Sbjct: 324 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 265 Query: 187 agaaacgctggctctcggccgtcacaggcatggcaacaatggctaggaaaaggaaaaggt 246 ||||| ||||| || | || |||||||||||| |||||||||||| | |||| ||| Sbjct: 264 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 205 Query: 247 gttgcaacaaccctatccttgttgtgcgcaatcccggacaacgctaagatggtgtgtgtc 306 || ||||| ||||| |||||| |||||||| |||| |||||||| |||||||| Sbjct: 204 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 145 Query: 307 gctcgccgtgctacgttcgtgaaagaagattgatccaatggggaccgggcacaaatgtgc 366 |||| |||||| || ||| ||||| ||||||| ||||||||||| | ||||| || | Sbjct: 144 gctctccgtgcaacattcttgaaatcagattgacccaatggggactgagcacacattagt 85 Query: 367 ttgatgctcttcttgacaataggaatcagctggtccttggcatttgctacttctcggaaa 426 |||| | || |||||||||||||||||||||| ||||| ||| | || || | ||||| Sbjct: 84 ttgaggttcctcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaa 25 Query: 427 ttgcttccaccc 438 |||||||||||| Sbjct: 24 ttgcttccaccc 13 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Minus Query: 18 gtataatctttccaactgtctataattgaaagaatgacaccaat 61 ||||||||||| | |||| ||||||||||||||||||| |||| Sbjct: 426 gtataatcttttgatctgtttataattgaaagaatgacaacaat 383
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 81.8 bits (41), Expect = 2e-12 Identities = 170/213 (79%) Strand = Plus / Plus Query: 127 atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 186 |||| |||||| ||| |||| || || |||||||||||||| |||||| ||||||||| Sbjct: 29299658 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 29299717 Query: 187 agaaacgctggctctcggccgtcacaggcatggcaacaatggctaggaaaaggaaaaggt 246 ||||| ||||| || | || |||||||||||| |||||||||||| | |||| ||| Sbjct: 29299718 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 29299777 Query: 247 gttgcaacaaccctatccttgttgtgcgcaatcccggacaacgctaagatggtgtgtgtc 306 || ||||| ||||| |||||| |||||||| |||| |||||||| |||||||| Sbjct: 29299778 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 29299837 Query: 307 gctcgccgtgctacgttcgtgaaagaagattga 339 |||| |||||| || ||| ||||| ||||||| Sbjct: 29299838 gctctccgtgcaacattcttgaaatcagattga 29299870 Score = 67.9 bits (34), Expect = 3e-08 Identities = 133/166 (80%) Strand = Plus / Plus Query: 341 ccaatggggaccgggcacaaatgtgcttgatgctcttcttgacaataggaatcagctggt 400 ||||||||||| | ||||| || | |||| | || |||||||||||||||||||||| | Sbjct: 29300487 ccaatggggactgagcacacattagtttgaggttcctcttgacaataggaatcagctgtt 29300546 Query: 401 ccttggcatttgctacttctcggaaattgcttccaccctcatcagtgcattgattaagat 460 |||| ||| | || || | ||||||||||||||||| ||| |||| || | ||||| Sbjct: 29300547 ccttagcaccttctgtttgttggaaattgcttccacccccataggtgcgttcaataagac 29300606 Query: 461 tacttgcagactgaacaaattgtgagctactctgctggctctgcat 506 ||||| | ||||||||| |||||||||||||||| ||||||| Sbjct: 29300607 cccttgctggctgaacaaaagatgagctactctgctggttctgcat 29300652 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Plus Query: 18 gtataatctttccaactgtctataattgaaagaatgacaccaat 61 ||||||||||| | |||| ||||||||||||||||||| |||| Sbjct: 29299556 gtataatcttttgatctgtttataattgaaagaatgacaacaat 29299599
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0597G07 Length = 152928 Score = 81.8 bits (41), Expect = 2e-12 Identities = 170/213 (79%) Strand = Plus / Plus Query: 127 atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 186 |||| |||||| ||| |||| || || |||||||||||||| |||||| ||||||||| Sbjct: 88347 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 88406 Query: 187 agaaacgctggctctcggccgtcacaggcatggcaacaatggctaggaaaaggaaaaggt 246 ||||| ||||| || | || |||||||||||| |||||||||||| | |||| ||| Sbjct: 88407 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 88466 Query: 247 gttgcaacaaccctatccttgttgtgcgcaatcccggacaacgctaagatggtgtgtgtc 306 || ||||| ||||| |||||| |||||||| |||| |||||||| |||||||| Sbjct: 88467 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 88526 Query: 307 gctcgccgtgctacgttcgtgaaagaagattga 339 |||| |||||| || ||| ||||| ||||||| Sbjct: 88527 gctctccgtgcaacattcttgaaatcagattga 88559 Score = 67.9 bits (34), Expect = 3e-08 Identities = 133/166 (80%) Strand = Plus / Plus Query: 341 ccaatggggaccgggcacaaatgtgcttgatgctcttcttgacaataggaatcagctggt 400 ||||||||||| | ||||| || | |||| | || |||||||||||||||||||||| | Sbjct: 89176 ccaatggggactgagcacacattagtttgaggttcctcttgacaataggaatcagctgtt 89235 Query: 401 ccttggcatttgctacttctcggaaattgcttccaccctcatcagtgcattgattaagat 460 |||| ||| | || || | ||||||||||||||||| ||| |||| || | ||||| Sbjct: 89236 ccttagcaccttctgtttgttggaaattgcttccacccccataggtgcgttcaataagac 89295 Query: 461 tacttgcagactgaacaaattgtgagctactctgctggctctgcat 506 ||||| | ||||||||| |||||||||||||||| ||||||| Sbjct: 89296 cccttgctggctgaacaaaagatgagctactctgctggttctgcat 89341 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Plus Query: 18 gtataatctttccaactgtctataattgaaagaatgacaccaat 61 ||||||||||| | |||| ||||||||||||||||||| |||| Sbjct: 88245 gtataatcttttgatctgtttataattgaaagaatgacaacaat 88288
>gb|AE013057.1| Thermoanaerobacter tengcongensis MB4, section 84 of 244 of the complete genome Length = 14939 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 gcttgatgctcttcttgacaa 385 ||||||||||||||||||||| Sbjct: 11736 gcttgatgctcttcttgacaa 11756
>emb|AL953849.10| Mouse DNA sequence from clone RP23-384G9 on chromosome 2, complete sequence Length = 38989 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 gctggtccttggcatttgcta 415 ||||||||||||||||||||| Sbjct: 22123 gctggtccttggcatttgcta 22143
>gb|AC163634.4| Mus musculus BAC clone RP23-152O2 from chromosome 12, complete sequence Length = 199499 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 460 ttacttgcagactgaacaaattgtg 484 |||||||||||| |||||||||||| Sbjct: 132484 ttacttgcagacagaacaaattgtg 132508
>ref|XM_420052.1| PREDICTED: Gallus gallus similar to MGC68696 protein (LOC422046), mRNA Length = 1722 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 aggaaaaggaaaaggtgttg 250 |||||||||||||||||||| Sbjct: 330 aggaaaaggaaaaggtgttg 349
>ref|XM_381885.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01709.1) partial mRNA Length = 3045 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 gacaataggaatcagctggt 400 |||||||||||||||||||| Sbjct: 2512 gacaataggaatcagctggt 2531
>gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosome 1, complete sequence Length = 183428 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 tcagctggtccttggcattt 411 |||||||||||||||||||| Sbjct: 96876 tcagctggtccttggcattt 96895
>gb|AC112236.3| Homo sapiens BAC clone RP11-308D13 from 4, complete sequence Length = 160615 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gctcttcttgacaataggaa 391 |||||||||||||||||||| Sbjct: 51582 gctcttcttgacaataggaa 51563
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 acaggcatggcaacaatggc 229 |||||||||||||||||||| Sbjct: 582370 acaggcatggcaacaatggc 582389
>gb|U84248.2|AAU84248 Aedes aegypti blood meal-induced protein (MRRG) mRNA, complete cds Length = 3307 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 tctgctggctctgcatgaaa 510 |||||||||||||||||||| Sbjct: 1340 tctgctggctctgcatgaaa 1359
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 aggaaaaggaaaaggtgttg 250 |||||||||||||||||||| Sbjct: 777654 aggaaaaggaaaaggtgttg 777673
>gb|AC009981.6|AC009981 Drosophila melanogaster, chromosome 3R, region 97C-97D, BAC clone BACR24O14, complete sequence Length = 170356 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 caacaatggctaggaaaaggaaaa 243 ||||||||||| |||||||||||| Sbjct: 11359 caacaatggctgggaaaaggaaaa 11336
>gb|AC008215.5|AC008215 Drosophila melanogaster, chromosome 3R, region 97C-97C, BAC clone BACR08N03, complete sequence Length = 165439 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 caacaatggctaggaaaaggaaaa 243 ||||||||||| |||||||||||| Sbjct: 148077 caacaatggctgggaaaaggaaaa 148054
>ref|XM_233761.3| PREDICTED: Rattus norvegicus IBR domain containing 3 (predicted) (Ibrdc3_predicted), mRNA Length = 2393 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 tctgctggctctgcatgaaa 510 |||||||||||||||||||| Sbjct: 785 tctgctggctctgcatgaaa 804
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 aggaaaaggaaaaggtgttg 250 |||||||||||||||||||| Sbjct: 76874 aggaaaaggaaaaggtgttg 76893
>gb|AE003757.2| Drosophila melanogaster chromosome 3R, section 95 of 118 of the complete sequence Length = 191834 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 caacaatggctaggaaaaggaaaa 243 ||||||||||| |||||||||||| Sbjct: 156608 caacaatggctgggaaaaggaaaa 156585
>gb|AF018435.1|ACADL3 Mus musculus long-chain acyl-CoA dehydrogenase (Acadl) gene, exons 2 and 3 Length = 5283 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 tcagctggtccttggcattt 411 |||||||||||||||||||| Sbjct: 2686 tcagctggtccttggcattt 2667 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,933,817 Number of Sequences: 3902068 Number of extensions: 3933817 Number of successful extensions: 77191 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77095 Number of HSP's gapped (non-prelim): 87 length of query: 512 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 489 effective length of database: 17,143,297,704 effective search space: 8383072577256 effective search space used: 8383072577256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
