ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22d17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473064.1| Oryza sativa (japonica cultivar-group), predic... 54 4e-04
2emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 54 4e-04
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
4dbj|AB117993.1| Oryza sativa (japonica cultivar-group) bip106 mR... 54 4e-04
5dbj|AK068884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
6dbj|AK068612.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
7emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 54 4e-04
8ref|XM_466696.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
10dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
11dbj|AB118021.1| Oryza sativa (japonica cultivar-group) bip135 mR... 50 0.007
12dbj|AK072455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
13gb|AY104489.1| Zea mays PCO108349 mRNA sequence 50 0.007
14gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 44 0.41
15gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome... 40 6.4
16ref|XM_510372.1| PREDICTED: Pan troglodytes LOC453400 (LOC453400... 40 6.4
17ref|XM_610426.2| PREDICTED: Bos taurus similar to solute carrier... 40 6.4
18gb|AC131752.3| Mus musculus BAC clone RP23-21D6 from chromosome ... 40 6.4
19ref|NM_004212.1| Homo sapiens solute carrier family 28 (sodium-c... 40 6.4
20emb|AL109751.19|HSJ237H22 Human DNA sequence from clone RP1-237H... 40 6.4
21emb|AJ719939.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.4
22emb|CR859018.1| Pongo pygmaeus mRNA; cDNA DKFZp469H151 (from clo... 40 6.4
23ref|NM_001006449.1| Gallus gallus signal recognition particle 72... 40 6.4
24gb|AY957499.1| Bos taurus glutamate-cysteine ligase catalytic su... 40 6.4
25gb|AC092612.3| Homo sapiens BAC clone RP11-174F8 from 4, complet... 40 6.4
26gb|AC051619.7|AC051619 Homo sapiens chromosome 15 clone CTD-2651... 40 6.4
27gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, co... 40 6.4
28dbj|AK222709.1| Homo sapiens mRNA for solute carrier family 28 (... 40 6.4
29gb|BC093737.1| Homo sapiens solute carrier family 28 (sodium-cou... 40 6.4
30gb|AC091619.3| Papio anubis clone RP41-139B7, complete sequence 40 6.4
31gb|AC123634.10| Mus musculus chromosome 3, clone RP24-434E24, co... 40 6.4
32gb|BC112047.1| Homo sapiens solute carrier family 28 (sodium-cou... 40 6.4
33gb|U84392.1|HSU84392 Human Na+-dependent purine specific transpo... 40 6.4
34gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 6.4
35gb|AF036109.1|AF036109 Homo sapiens Na+/nucleoside cotransporter... 40 6.4
36gb|AC165416.12| Mus musculus chromosome 3, clone RP23-86I19, com... 40 6.4 
>ref|XM_473064.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2541

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 289  agccttccttctgcgcttctttccagt 315
            |||||||||||||||||||||||||||
Sbjct: 2532 agccttccttctgcgcttctttccagt 2506
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
              complete sequence
          Length = 173171

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 289    agccttccttctgcgcttctttccagt 315
              |||||||||||||||||||||||||||
Sbjct: 135105 agccttccttctgcgcttctttccagt 135131
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                           
Query: 289      agccttccttctgcgcttctttccagt 315
                |||||||||||||||||||||||||||
Sbjct: 25014520 agccttccttctgcgcttctttccagt 25014546
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>dbj|AB117993.1| Oryza sativa (japonica cultivar-group) bip106 mRNA for BRI1-KD
           interacting protein 106, partial cds
          Length = 709

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 289 agccttccttctgcgcttctttccagt 315
           |||||||||||||||||||||||||||
Sbjct: 700 agccttccttctgcgcttctttccagt 674
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>dbj|AK068884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002E10, full
            insert sequence
          Length = 2250

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 289  agccttccttctgcgcttctttccagt 315
            |||||||||||||||||||||||||||
Sbjct: 1887 agccttccttctgcgcttctttccagt 1861
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>dbj|AK068612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155D11, full
            insert sequence
          Length = 3038

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 289  agccttccttctgcgcttctttccagt 315
            |||||||||||||||||||||||||||
Sbjct: 2685 agccttccttctgcgcttctttccagt 2659
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
              sequence
          Length = 148644

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 289    agccttccttctgcgcttctttccagt 315
              |||||||||||||||||||||||||||
Sbjct: 142757 agccttccttctgcgcttctttccagt 142783
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>ref|XM_466696.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2870

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 288  aagccttccttctgcgcttctttcc 312
            |||||||||||||||||||||||||
Sbjct: 2529 aagccttccttctgcgcttctttcc 2505



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 288  aagccttccttctgcgcttcttt 310
            |||||||||||||||||||||||
Sbjct: 2589 aagccttccttctgcgcttcttt 2567
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 288      aagccttccttctgcgcttctttcc 312
                |||||||||||||||||||||||||
Sbjct: 24159656 aagccttccttctgcgcttctttcc 24159680



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 288      aagccttccttctgcgcttcttt 310
                |||||||||||||||||||||||
Sbjct: 24159596 aagccttccttctgcgcttcttt 24159618
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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_A05
          Length = 174290

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 288    aagccttccttctgcgcttctttcc 312
              |||||||||||||||||||||||||
Sbjct: 118397 aagccttccttctgcgcttctttcc 118421



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 288    aagccttccttctgcgcttcttt 310
              |||||||||||||||||||||||
Sbjct: 118337 aagccttccttctgcgcttcttt 118359
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>dbj|AB118021.1| Oryza sativa (japonica cultivar-group) bip135 mRNA for BRI1-KD
            interacting protein 135, partial cds
          Length = 1850

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 288  aagccttccttctgcgcttctttcc 312
            |||||||||||||||||||||||||
Sbjct: 1481 aagccttccttctgcgcttctttcc 1457



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 288  aagccttccttctgcgcttcttt 310
            |||||||||||||||||||||||
Sbjct: 1541 aagccttccttctgcgcttcttt 1519
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>dbj|AK072455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114I24, full
            insert sequence
          Length = 2870

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 288  aagccttccttctgcgcttctttcc 312
            |||||||||||||||||||||||||
Sbjct: 2529 aagccttccttctgcgcttctttcc 2505



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 288  aagccttccttctgcgcttcttt 310
            |||||||||||||||||||||||
Sbjct: 2589 aagccttccttctgcgcttcttt 2567
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>gb|AY104489.1| Zea mays PCO108349 mRNA sequence
          Length = 553

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 288 aagccttccttctgcgcttctttcc 312
           |||||||||||||||||||||||||
Sbjct: 197 aagccttccttctgcgcttctttcc 173
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 301   gcgcttctttccagttgaagac 322
             ||||||||||||||||||||||
Sbjct: 56117 gcgcttctttccagttgaagac 56096
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>gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome 5, complete sequence
          Length = 245594

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     atgttcccttgaggctctgc 49
              ||||||||||||||||||||
Sbjct: 146595 atgttcccttgaggctctgc 146576
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>ref|XM_510372.1| PREDICTED: Pan troglodytes LOC453400 (LOC453400), mRNA
          Length = 1977

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 agatgtttcctgccacagcc 125
           ||||||||||||||||||||
Sbjct: 931 agatgtttcctgccacagcc 912
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>ref|XM_610426.2| PREDICTED: Bos taurus similar to solute carrier family 28
           (sodium-coupled nucleoside transporter), member 2
           (LOC531921), mRNA
          Length = 2333

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 agatgtttcctgccacagcc 125
           ||||||||||||||||||||
Sbjct: 847 agatgtttcctgccacagcc 828
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>gb|AC131752.3| Mus musculus BAC clone RP23-21D6 from chromosome 5, complete sequence
          Length = 203321

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atgttcccttgaggctctgc 49
             ||||||||||||||||||||
Sbjct: 81351 atgttcccttgaggctctgc 81332
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>ref|NM_004212.1| Homo sapiens solute carrier family 28 (sodium-coupled nucleoside
           transporter), member 2 (SLC28A2), mRNA
          Length = 2459

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 agatgtttcctgccacagcc 125
           ||||||||||||||||||||
Sbjct: 990 agatgtttcctgccacagcc 971
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>emb|AL109751.19|HSJ237H22 Human DNA sequence from clone RP1-237H22 on chromosome Xq23-24 Contains
             the gene for HOM-TES-85 tumor antigen and a CpG island,
             complete sequence
          Length = 102751

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tagatgttcccttgaggctc 46
             ||||||||||||||||||||
Sbjct: 43786 tagatgttcccttgaggctc 43805
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>emb|AJ719939.1| Gallus gallus mRNA for hypothetical protein, clone 8j15
          Length = 2157

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 ccagtcagcagacagacaaa 180
           ||||||||||||||||||||
Sbjct: 366 ccagtcagcagacagacaaa 385
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>emb|CR859018.1| Pongo pygmaeus mRNA; cDNA DKFZp469H151 (from clone DKFZp469H151)
          Length = 2403

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 ccttccttctgcgcttcttt 310
           ||||||||||||||||||||
Sbjct: 503 ccttccttctgcgcttcttt 484
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>ref|NM_001006449.1| Gallus gallus signal recognition particle 72kDa (SRP72), mRNA
          Length = 2157

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 ccagtcagcagacagacaaa 180
           ||||||||||||||||||||
Sbjct: 366 ccagtcagcagacagacaaa 385
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>gb|AY957499.1| Bos taurus glutamate-cysteine ligase catalytic subunit (GCLC), MHC class
              II antigen (DSB), MHC class II antigen (DYA), MHC class II
              antigen (DYB), MHC class II antigen (DOB), transporter 2
              ATP-binding cassette sub-family B (TAP2), proteasome
              subunit beta type 8 (PSMB8), transporter 1 ATP-binding
              cassette sub-family B (TAP1), proteosome subunit beta type
              9 (PSMB9), histone H2B-like (H2B), MHC class II antigen
              (DMB), MHC class II antigen (DMA), bromodomain containing 2
              (BRD2), MHC class II antigen (DOA), collagen type XI alpha
              2 (COL11A2), retinoid X receptor beta (RXRB), solute
              carrier family 39 zinc transporter member 7 (HKE4), and
              hydroxysteroid (17-beta) dehydrogenase 8 (HKE6) genes,
              complete cds; and ring finger protein 1 (RING1) gene,
              partial cds
          Length = 447010

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 94     tacagctactgcagatgtttcctg 117
              ||||| ||||||||||||||||||
Sbjct: 278165 tacagatactgcagatgtttcctg 278188
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>gb|AC092612.3| Homo sapiens BAC clone RP11-174F8 from 4, complete sequence
          Length = 145706

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    ccttccttctgcgcttcttt 310
              ||||||||||||||||||||
Sbjct: 134533 ccttccttctgcgcttcttt 134552
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>gb|AC051619.7|AC051619 Homo sapiens chromosome 15 clone CTD-2651B20 map 15q21.1, complete
              sequence
          Length = 213999

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    agatgtttcctgccacagcc 125
              ||||||||||||||||||||
Sbjct: 137446 agatgtttcctgccacagcc 137427
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>gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, complete sequence
          Length = 179941

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   agccttccttctgcgcttct 308
             ||||||||||||||||||||
Sbjct: 45167 agccttccttctgcgcttct 45148
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>dbj|AK222709.1| Homo sapiens mRNA for solute carrier family 28 (sodium-coupled
           nucleoside transporter), member 2 variant, clone:
           COL02243
          Length = 2298

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 agatgtttcctgccacagcc 125
           ||||||||||||||||||||
Sbjct: 996 agatgtttcctgccacagcc 977
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>gb|BC093737.1| Homo sapiens solute carrier family 28 (sodium-coupled nucleoside
           transporter), member 2, mRNA (cDNA clone MGC:120772
           IMAGE:7939582), complete cds
          Length = 2095

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 agatgtttcctgccacagcc 125
           ||||||||||||||||||||
Sbjct: 959 agatgtttcctgccacagcc 940
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>gb|AC091619.3| Papio anubis clone RP41-139B7, complete sequence
          Length = 181302

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   ctgcagatgtttcctgccac 121
             ||||||||||||||||||||
Sbjct: 67320 ctgcagatgtttcctgccac 67301
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>gb|AC123634.10| Mus musculus chromosome 3, clone RP24-434E24, complete sequence
          Length = 176948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   agatgcctcctgctccattt 353
             ||||||||||||||||||||
Sbjct: 12165 agatgcctcctgctccattt 12184
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>gb|BC112047.1| Homo sapiens solute carrier family 28 (sodium-coupled nucleoside
           transporter), member 2, mRNA (cDNA clone MGC:138252
           IMAGE:8327515), complete cds
          Length = 2107

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 agatgtttcctgccacagcc 125
           ||||||||||||||||||||
Sbjct: 971 agatgtttcctgccacagcc 952
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>gb|U84392.1|HSU84392 Human Na+-dependent purine specific transporter mRNA, complete cds
          Length = 2459

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 agatgtttcctgccacagcc 125
           ||||||||||||||||||||
Sbjct: 990 agatgtttcctgccacagcc 971
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 303     gcttctttccagttgaagac 322
               ||||||||||||||||||||
Sbjct: 1616645 gcttctttccagttgaagac 1616626
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>gb|AF036109.1|AF036109 Homo sapiens Na+/nucleoside cotransporter (hCNT2) mRNA, complete
           cds
          Length = 1995

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 agatgtttcctgccacagcc 125
           ||||||||||||||||||||
Sbjct: 945 agatgtttcctgccacagcc 926
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>gb|AC165416.12| Mus musculus chromosome 3, clone RP23-86I19, complete sequence
          Length = 130155

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   agatgcctcctgctccattt 353
             ||||||||||||||||||||
Sbjct: 76469 agatgcctcctgctccattt 76488


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,303,729
Number of Sequences: 3902068
Number of extensions: 3303729
Number of successful extensions: 55770
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55674
Number of HSP's gapped (non-prelim): 96
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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