ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22d13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CG146_ARATH (Q93VG8) UPF0326 protein At4g17486 219 8e-57
2CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog 120 4e-27
3CG146_MOUSE (Q9D291) UPF0326 protein CGI-146 homolog 120 4e-27
4CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146 120 4e-27
5HAG1_SCHPO (Q8X1T0) UPF0326 protein hag1 102 1e-21
6HEX1_VIBFU (P96155) Beta-hexosaminidase (EC 3.2.1.52) (N-acetyl-... 31 4.1
7LIPA_MYCPA (P61197) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid sy... 30 5.3
8GLGB_FELCA (Q6T308) 1,4-alpha-glucan branching enzyme (EC 2.4.1.... 30 9.1

>CG146_ARATH (Q93VG8) UPF0326 protein At4g17486|
          Length = 224

 Score =  219 bits (557), Expect = 8e-57
 Identities = 90/158 (56%), Positives = 128/158 (81%), Gaps = 1/158 (0%)
 Frame = -1

Query: 669 PVVLNVYDLTPLNNYVHWCGLGIFHSAVEVHGSEYSFGAHDLPTSGVFEVEPKSCPGFLY 490
           PV LNVYDLTP+NNY++W G+GIFHS +E H  EY +GAH+ PTSGV+EVEP++CPGF++
Sbjct: 27  PVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIF 86

Query: 489 RSSIFIGRTSLHPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVN 310
           R S+ +G TS+   +FR ++++++ +YHGDTYHLI+KNCNHFT+++  +LTGKPIPGW+N
Sbjct: 87  RRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWIN 146

Query: 309 RLAKLGAFCNCLLPESMRLESTET-KNLTDYHFSDDSN 199
           RLA++G+FCNCLLPES++L +        ++   D+SN
Sbjct: 147 RLARVGSFCNCLLPESIQLTAVSALPERLEFSDEDESN 184



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>CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog|
          Length = 194

 Score =  120 bits (301), Expect = 4e-27
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 11/159 (6%)
 Frame = -1

Query: 666 VVLNVYDLTPLNNYVHWCGLGIFHSAVEVHGSEYSFGAHDLPTSGVFEVEPKSCPG---- 499
           VVLNVYD+  +N Y    G+G+FHS +EV+G E+++G H  P SG+FE+ P +       
Sbjct: 7   VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66

Query: 498 FLYRSSIFIGRTSLHPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPG 319
           F ++ ++ +G T     +    ++ +  EY G+ YHL+ KNCNHF+  LS  L GK IP 
Sbjct: 67  FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126

Query: 318 WVNRLAKLGA---FCNCLLPES----MRLESTETKNLTD 223
           W+NRLA   +   F    LP+       L+S+ ++ L D
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165



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>CG146_MOUSE (Q9D291) UPF0326 protein CGI-146 homolog|
          Length = 194

 Score =  120 bits (301), Expect = 4e-27
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 11/159 (6%)
 Frame = -1

Query: 666 VVLNVYDLTPLNNYVHWCGLGIFHSAVEVHGSEYSFGAHDLPTSGVFEVEPKSCPG---- 499
           VVLNVYD+  +N Y    G+G+FHS +EV+G E+++G H  P SG+FE+ P +       
Sbjct: 7   VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66

Query: 498 FLYRSSIFIGRTSLHPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPG 319
           F ++ ++ +G T     +    ++ +  EY G+ YHL+ KNCNHF+  LS  L GK IP 
Sbjct: 67  FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126

Query: 318 WVNRLAKLGA---FCNCLLPES----MRLESTETKNLTD 223
           W+NRLA   +   F    LP+       L+S+ ++ L D
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165



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>CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146|
          Length = 194

 Score =  120 bits (301), Expect = 4e-27
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 11/159 (6%)
 Frame = -1

Query: 666 VVLNVYDLTPLNNYVHWCGLGIFHSAVEVHGSEYSFGAHDLPTSGVFEVEPKSCPG---- 499
           VVLNVYD+  +N Y    G+G+FHS +EV+G E+++G H  P SG+FE+ P +       
Sbjct: 7   VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66

Query: 498 FLYRSSIFIGRTSLHPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPG 319
           F ++ ++ +G T     +    ++ +  EY G+ YHL+ KNCNHF+  LS  L GK IP 
Sbjct: 67  FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126

Query: 318 WVNRLAKLGA---FCNCLLPES----MRLESTETKNLTD 223
           W+NRLA   +   F    LP+       L+S+ ++ L D
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165



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>HAG1_SCHPO (Q8X1T0) UPF0326 protein hag1|
          Length = 201

 Score =  102 bits (253), Expect = 1e-21
 Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
 Frame = -1

Query: 666 VVLNVYDL---TPLNNYVHWCGLGIFHSAVEVHGSEYSFGAHDLPTS-GVFEVEPKS-CP 502
           V +NVYDL   +P+N      GLGI+H+ + + G EY+FGAH++P S GVF   P+    
Sbjct: 3   VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLE 62

Query: 501 GFLYRSSIFIGRTSLHPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIP 322
           G  +R SI +   +L   +    + R++ E+ G +Y L+ +NCNHFT+  +  LTG PIP
Sbjct: 63  GCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIP 122

Query: 321 GWVNRLAKLG----AFCNCLLPESMRLESTETKNLTDYHFSDDSNLTIN 187
            ++NR++++G       N LL           KN +D   S DS+  ++
Sbjct: 123 SFLNRISRIGLAFPTITNALLQHGQ-------KNTSDVDDSSDSSSDVD 164



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>HEX1_VIBFU (P96155) Beta-hexosaminidase (EC 3.2.1.52)|
           (N-acetyl-beta-glucosaminidase)
           (Beta-N-acetylhexosaminidase)
          Length = 611

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 22/76 (28%), Positives = 32/76 (42%)
 Frame = -1

Query: 513 KSCPGFLYRSSIFIGRTSLHPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTG 334
           K  P F YR  +       HPLE    +    + Y  +T+H       H TDD   R+  
Sbjct: 255 KDAPRFKYRGMMLDCARHFHPLERVKRLINQLAHYKFNTFHW------HLTDDEGWRIEI 308

Query: 333 KPIPGWVNRLAKLGAF 286
           K +P    +L  +GA+
Sbjct: 309 KSLP----QLTDIGAW 320



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>LIPA_MYCPA (P61197) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 307

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 652 VRPHAAKQLRPLVRARHLPLRRRSPWIRVQ 563
           V P   K LR  VR    P+ R+ PWIRV+
Sbjct: 3   VAPEGRKLLRLEVRNAETPIERKPPWIRVR 32



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>GLGB_FELCA (Q6T308) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (Brancher enzyme)
          Length = 699

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 293 PSLASRLTQPGIGFPVNLVLRSSVKWLQFL 382
           P+L S ++Q G+GF   L +    KW+Q L
Sbjct: 415 PALCSPISQGGVGFDYRLAMAIPDKWIQLL 444


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,253,748
Number of Sequences: 219361
Number of extensions: 1886334
Number of successful extensions: 4487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4483
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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