ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22d09 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 81.3 bits (199), Expect = 2e-15 Identities = 36/96 (37%), Positives = 52/96 (54%) Frame = -2 Query: 571 CGEVSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYL 392 C E +++L Y HLC ED+ W W+ +Y+I+Y F ++G S LY Sbjct: 568 CSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYF-FSKLQITGTASTILYF 626 Query: 391 GYSLIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 GY++IM L TG IGF F+FV ++S VK+D Sbjct: 627 GYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 80.9 bits (198), Expect = 3e-15 Identities = 36/96 (37%), Positives = 52/96 (54%) Frame = -2 Query: 571 CGEVSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYL 392 C E +++L Y HLC ED+ W W+ +Y+I+Y F ++G S LY Sbjct: 569 CSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYF-FSKLQITGTASTILYF 627 Query: 391 GYSLIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 GY++IM L TG IGF F+FV ++S VK+D Sbjct: 628 GYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 80.9 bits (198), Expect = 3e-15 Identities = 35/96 (36%), Positives = 52/96 (54%) Frame = -2 Query: 571 CGEVSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYL 392 C E +++L Y HLC ED+ W W+ +Y+++Y F ++G S LY Sbjct: 569 CSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYF-FSKLQITGTASTILYF 627 Query: 391 GYSLIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 GY++IM L TG IGF F+FV ++S VK+D Sbjct: 628 GYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 80.9 bits (198), Expect = 3e-15 Identities = 35/96 (36%), Positives = 52/96 (54%) Frame = -2 Query: 571 CGEVSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYL 392 C E +++L Y HLC ED+ W W+ +Y+++Y F ++G S LY Sbjct: 569 CSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYF-FSKLQITGTASTILYF 627 Query: 391 GYSLIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 GY++IM L TG IGF F+FV ++S VK+D Sbjct: 628 GYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 76.3 bits (186), Expect = 7e-14 Identities = 33/96 (34%), Positives = 54/96 (56%) Frame = -2 Query: 571 CGEVSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYL 392 C ++S+V+ Y LC ED++WWW+ +Y+I Y V L + + + LY Sbjct: 531 CSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKL-DIVEFIPSLLYF 589 Query: 391 GYSLIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 GY+ +M + L TG IGF ++ FV ++++VKID Sbjct: 590 GYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 625
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/93 (34%), Positives = 53/93 (56%) Frame = -2 Query: 562 VSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYS 383 V++++TY LC+E+WKW W+ I+ ++F L G + LY+GYS Sbjct: 577 VTILITYHSLCLENWKWQWRGFIIGGAGCALYVF--IHSILFTKFKLGGFTTIVLYVGYS 634 Query: 382 LIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 +++ L TG+IGF+ S FV ++SS+K+D Sbjct: 635 SVISLLCCLVTGSIGFISSMLFVRKIYSSIKVD 667
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 67.0 bits (162), Expect = 4e-11 Identities = 31/93 (33%), Positives = 48/93 (51%) Frame = -2 Query: 562 VSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYS 383 +S+ LTY L ED++WWW+ FLYS+ Y ++SG V + GYS Sbjct: 515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYS 573 Query: 382 LIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 L+ + L G I F S F+ Y++ ++K+D Sbjct: 574 LLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 67.0 bits (162), Expect = 4e-11 Identities = 31/93 (33%), Positives = 48/93 (51%) Frame = -2 Query: 562 VSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYS 383 +S+ LTY L ED++WWW+ FLYS+ Y ++SG V + GYS Sbjct: 515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYS 573 Query: 382 LIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 L+ + L G I F S F+ Y++ ++K+D Sbjct: 574 LLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 67.0 bits (162), Expect = 4e-11 Identities = 31/93 (33%), Positives = 48/93 (51%) Frame = -2 Query: 562 VSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYS 383 +S+ LTY L ED++WWW+ FLYS+ Y ++SG V + GYS Sbjct: 515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYS 573 Query: 382 LIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 L+ + L G I F S F+ Y++ ++K+D Sbjct: 574 LLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 67.0 bits (162), Expect = 4e-11 Identities = 31/93 (33%), Positives = 48/93 (51%) Frame = -2 Query: 562 VSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYS 383 +S+ LTY L ED++WWW+ FLYS+ Y ++SG V + GYS Sbjct: 498 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYS 556 Query: 382 LIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 L+ + L G I F S F+ Y++ ++K+D Sbjct: 557 LLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 57.0 bits (136), Expect = 4e-08 Identities = 28/93 (30%), Positives = 48/93 (51%) Frame = -2 Query: 562 VSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYS 383 V++V TY L ED++W W ++YS Y F + + G + Y GY Sbjct: 496 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTK-MYGLFQTSFYFGYM 554 Query: 382 LIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 + + A+ + GAIG++ + FV ++++VKID Sbjct: 555 AVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 57.0 bits (136), Expect = 4e-08 Identities = 28/93 (30%), Positives = 48/93 (51%) Frame = -2 Query: 562 VSLVLTYMHLCVEDWKWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYS 383 V++V TY L ED++W W ++YS Y F + + G + Y GY Sbjct: 498 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTK-MYGLFQTSFYFGYM 556 Query: 382 LIMAFAIMLSTGAIGFLLSFYFVHYLFSSVKID 284 + + A+ + GAIG++ + FV ++++VKID Sbjct: 557 AVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589
>YEU3_YEAST (P40071) Hypothetical protein YER113C precursor| Length = 706 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 6/94 (6%) Frame = -2 Query: 565 EVSLVLTY--MHLCVEDW----KWWWKXXXXXXXXXXXXFLYSINYLVFDLRSLSGPVSA 404 E+S++ +Y M C ED W WK LYS+ Y +F + ++ G S Sbjct: 608 EISIIGSYLLMRFCFEDKVVRNNWRWKCFEMGFSGGVYMELYSL-YYIFAVLNIHGFSSI 666 Query: 403 TLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYLF 302 + + YSLI L GA+ +L + +F++ ++ Sbjct: 667 LISICYSLIFNVMCSLGLGALSYLTASWFINKIY 700
>CBIW_BACME (O87688) Putative 2Fe-2S ferredoxin| Length = 127 Score = 31.2 bits (69), Expect = 2.6 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 347 TSRQHDGKCHDQGVAKVERRGDWPAQAPE-VEHQVVDGV*EDEESNGARSKE 499 T+R +G+C D VA V GDW Q E V H++V E+ + G KE Sbjct: 50 TTRTCNGRCKDAPVAIVYPSGDWYKQVTEKVAHRIV----EEHLAGGCSLKE 97
>NCKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 1181 Score = 30.4 bits (67), Expect = 4.4 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = +2 Query: 338 ADGTSRQHDGKCHDQGVAKVERRGDWPAQAPEVEHQV 448 A+GT + +G+ +G +VE+ G+ A+ EVEH+V Sbjct: 808 AEGTEDEQEGETEAEG-KEVEQEGETEAEGKEVEHEV 843
>ATS18_HUMAN (Q8TE60) ADAMTS-18 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 18) (ADAM-TS 18) (ADAM-TS18) Length = 1221 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 12/49 (24%) Frame = -1 Query: 461 ILHQLPGV----------RPQEPERASLRDALPW--LLPDHGICHHAVY 351 +LHQ P V P++ E S D W L+P HG+C+H Y Sbjct: 1161 LLHQKPPVLRACNTNFCPAPEKREDPSCVDFFNWCHLVPQHGVCNHKFY 1209
>MSX2_HUMAN (P35548) Homeobox protein MSX-2 (Hox-8)| Length = 267 Score = 29.6 bits (65), Expect = 7.5 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +3 Query: 555 RETSPQTMTSRKRTMNRKPKT 617 R TSP T T RK NRKP+T Sbjct: 127 RHTSPTTCTLRKHKTNRKPRT 147
>ATS18_MOUSE (Q4VC17) ADAMTS-18 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 18) (ADAM-TS 18) (ADAM-TS18) Length = 1219 Score = 29.6 bits (65), Expect = 7.5 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 12/49 (24%) Frame = -1 Query: 461 ILHQLPGV----------RPQEPERASLRDALPW--LLPDHGICHHAVY 351 +LHQ P V P++ + S D W L+P HG+C+H Y Sbjct: 1159 LLHQKPPVLRACNTNFCPAPEKKDDPSCVDFFSWCHLVPQHGVCNHKFY 1207 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,155,482 Number of Sequences: 219361 Number of extensions: 1204220 Number of successful extensions: 2929 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2866 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2916 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
