ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21o08 |
|---|---|
| Clone Library Name | barley_pub |
>RT36_MOUSE (Q9CQX8) Mitochondrial 28S ribosomal protein S36 (S36mt) (MRP-S36)| Length = 102 Score = 33.1 bits (74), Expect = 0.48 Identities = 29/89 (32%), Positives = 39/89 (43%) Frame = -3 Query: 437 PRIPMIRFPKRHLKVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPS 258 P P+I+FP R K +A A A L S A + S G PP + Sbjct: 17 PHAPLIKFPNRRDKPKL--SASEALGSAALPSHSSA-ISQHSKGSTSPDLLMHQGPPDTA 73 Query: 257 HNAVGGPASQLPKRKPLSEEEIEAIMQGG 171 P Q +RKP+S+EE+E I +GG Sbjct: 74 EIIKSLP--QKYRRKPMSQEEMEFIQRGG 100
>RIMS1_HUMAN (Q86UR5) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1692 Score = 32.3 bits (72), Expect = 0.81 Identities = 18/67 (26%), Positives = 30/67 (44%) Frame = -3 Query: 398 KVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVGGPASQLPK 219 + P+ A P D + A+ AP + + N+ PPAP H V A +L Sbjct: 412 RAPAAARASPPDSPRAYSAERTAETRAPGAKQLTNHS-----PPAPRHGPVPAEAPELKA 466 Query: 218 RKPLSEE 198 ++PL ++ Sbjct: 467 QEPLRKQ 473
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 32.3 bits (72), Expect = 0.81 Identities = 34/133 (25%), Positives = 45/133 (33%), Gaps = 2/133 (1%) Frame = -3 Query: 461 SPDSSTKMPRIPMIRFPKRHLKVPSP--PAAQPADQHATLMSRLGAKVDAPSSGEKKNYR 288 +P ++T P + P+ PSP P QP A S L + P S + Sbjct: 530 APTTTTLSPPPTQQQPPQSAAPAPSPLLPQQQPTPSAAPAPSPLLPQQQPPPSAARAPSP 589 Query: 287 FRSDVPPAPSHNAVGGPASQLPKRKPLSEEEIEAIMQGGVF*YCFPTSCTFSGAPISPMP 108 P PS PA QLP E E P + +G ISP P Sbjct: 590 LPPQQQPLPSATPAPPPAQQLPPSATTLEPEKN-----------HPPAADRAGTEISPSP 638 Query: 107 CSIRNRFAQEPCY 69 F Q+P + Sbjct: 639 -----PFGQQPSF 646
>ASPP1_MOUSE (Q62415) Apoptosis stimulating of p53 protein 1 (Protein| phosphatase 1 regulatory subunit 13B) Length = 1087 Score = 31.2 bits (69), Expect = 1.8 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = -3 Query: 395 VPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVGGPASQLPKR 216 +P P A P+ Q + L +AP G + + R VPP+P++ G PA Sbjct: 485 LPRPGAGPPSRQKP---APLPPASNAPQPGSSQQIQQRISVPPSPTYPPAGPPAFPTGDG 541 Query: 215 KP 210 KP Sbjct: 542 KP 543
>SRYB_DROME (P07665) Serendipity locus protein beta| Length = 356 Score = 31.2 bits (69), Expect = 1.8 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Frame = -3 Query: 263 PSHNAVGGPASQLPKRKPLSEEEIEAIMQGGVF*YCFPTSCTFSGAPISPMPCSIRNRFA 84 P+ V A + P+R+P E+E E M+ + F S P MP S F Sbjct: 112 PAFKIVQATALKEPERQPGEEDECEEFMKEEMLDEEFQFS-----EPDDSMPSSEEEFFT 166 Query: 83 QE---PCYLWNSCFWSPELTNRHTR 18 + PC++ F S E+ RH + Sbjct: 167 ETTEIPCHICGEMFSSQEVLERHIK 191
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 31.2 bits (69), Expect = 1.8 Identities = 37/130 (28%), Positives = 44/130 (33%), Gaps = 3/130 (2%) Frame = -3 Query: 428 PMIRFPKRHLKVPSPPAAQPADQHATLMSRLGAKVDAPS-SGEKKNYRFRSDVPPAPSHN 252 P + P R +P PP+ +P R G P S R P PS + Sbjct: 346 PPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRS 405 Query: 251 AVGGPASQLPKRKPLSEEEIEAIMQGGVF*YCFPTSCTFSGAPISPMPC-SIRNRFAQEP 75 V P S R PL + A GAP P P SIRN F P Sbjct: 406 GVDSPRSG--PRPPLPPDRPSA------------------GAPPPPPPSTSIRNGFQDSP 445 Query: 74 CY-LWNSCFW 48 C W S F+ Sbjct: 446 CEDEWESRFY 455
>PERM_MOUSE (P11247) Myeloperoxidase precursor (EC 1.11.1.7) (MPO) [Contains:| Myeloperoxidase light chain; Myeloperoxidase heavy chain] Length = 718 Score = 30.8 bits (68), Expect = 2.4 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = -3 Query: 110 PCSIRNRFAQEPCYLWNSCFWS--PELTNRHTRF 15 PC + NR A+ PC+L S PELT+ HT F Sbjct: 360 PCLLTNRSARIPCFLAGDMRSSEMPELTSMHTLF 393
>EMIL2_MOUSE (Q8K482) EMILIN-2 precursor (Elastin microfibril interface-located| protein 2) (Elastin microfibril interfacer 2) (Basilin) Length = 1074 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/74 (27%), Positives = 32/74 (43%) Frame = -3 Query: 413 PKRHLKVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVGGPA 234 PK H+K P PP+A+P + ++V P KK + V P +A GP Sbjct: 125 PKDHMKTPRPPSARPKNNLKKATDTDPSQVSQP----KKTLSPTNAVEPGQVADAKQGPP 180 Query: 233 SQLPKRKPLSEEEI 192 + + EE++ Sbjct: 181 ELQQSKVQVLEEKV 194
>RT36_BOVIN (P82908) Mitochondrial 28S ribosomal protein S36 (S36mt) (MRP-S36)| Length = 103 Score = 30.8 bits (68), Expect = 2.4 Identities = 29/89 (32%), Positives = 40/89 (44%) Frame = -3 Query: 437 PRIPMIRFPKRHLKVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPS 258 P P+IRFP R P P ++ + A L S + + S G K PP + Sbjct: 18 PHTPLIRFPDRRDN-PKPNVSEVL-RSAGLPSHTSS-ISQHSKGSKSPDWLMHQGPPDTA 74 Query: 257 HNAVGGPASQLPKRKPLSEEEIEAIMQGG 171 P Q +RK +S+EEIE I +GG Sbjct: 75 EMIKTLP--QKYRRKLVSQEEIEFIQRGG 101
>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2| Length = 891 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/96 (22%), Positives = 35/96 (36%) Frame = -3 Query: 467 DCSPDSSTKMPRIPMIRFPKRHLKVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYR 288 D S S P+ + K P P P D + + R +P+ E+ + Sbjct: 49 DPSTPSPAASPKKETVAESAPSSKPPVMPLPLPGDSGQSPIVRPAPSSHSPAKREESPGK 108 Query: 287 FRSDVPPAPSHNAVGGPASQLPKRKPLSEEEIEAIM 180 + PP GG +S P R P +E+ I+ Sbjct: 109 QDAGRPPRDKDTRQGGGSSYPPSRSPFQKEDSNIIV 144
>NOLC1_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)| (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar and coiled-body phosphoprotein 1) Length = 704 Score = 30.0 bits (66), Expect = 4.0 Identities = 28/98 (28%), Positives = 40/98 (40%) Frame = -3 Query: 482 GEISLDCSPDSSTKMPRIPMIRFPKRHLKVPSPPAAQPADQHATLMSRLGAKVDAPSSGE 303 G+ S D SS + + P K+ + P P + A S + + S E Sbjct: 476 GDSSSDSESSSSEEEKKTPPKPPAKKKAAGAAVPKPTPVKKAAAESSSSSSSSEDSSEEE 535 Query: 302 KKNYRFRSDVPPAPSHNAVGGPASQLPKRKPLSEEEIE 189 KK + ++ P + A G PASQ K SEEE E Sbjct: 536 KKKPKSKA-TPKPQAGKANGVPASQNGKAGKESEEEEE 572
>E75BC_DROME (P17671) Ecdysone-induced protein 75B isoforms C/D (E75-A)| Length = 1199 Score = 30.0 bits (66), Expect = 4.0 Identities = 25/97 (25%), Positives = 39/97 (40%) Frame = -3 Query: 389 SPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVGGPASQLPKRKP 210 +P ++ AT + L +VD S + N +S PP +A+ A+ + + Sbjct: 1093 APASSSSGSNSATPLLEL--QVDIADSAQPLNLSKKSPTPPPSKLHALVAAANAVQRYPT 1150 Query: 209 LSEEEIEAIMQGGVF*YCFPTSCTFSGAPISPMPCSI 99 LS + GG P S S AP S P S+ Sbjct: 1151 LSADVTVTASNGG------PPSAAASPAPSSSPPASV 1181
>E75BA_DROME (P17672) Ecdysone-induced protein 75B isoform A (E75-B)| Length = 1355 Score = 30.0 bits (66), Expect = 4.0 Identities = 25/97 (25%), Positives = 39/97 (40%) Frame = -3 Query: 389 SPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVGGPASQLPKRKP 210 +P ++ AT + L +VD S + N +S PP +A+ A+ + + Sbjct: 1249 APASSSSGSNSATPLLEL--QVDIADSAQPLNLSKKSPTPPPSKLHALVAAANAVQRYPT 1306 Query: 209 LSEEEIEAIMQGGVF*YCFPTSCTFSGAPISPMPCSI 99 LS + GG P S S AP S P S+ Sbjct: 1307 LSADVTVTASNGG------PPSAAASPAPSSSPPASV 1337
>YBJD_ECOLI (P75828) Hypothetical protein ybjD| Length = 552 Score = 30.0 bits (66), Expect = 4.0 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 9/104 (8%) Frame = +3 Query: 81 LCKTVTNAARHRAYWRSTKGAAGGEAISEDTALHDSFN----LFLREWFAL-GKL*SWPS 245 +C+ V ++R A+ G + + S + H FN LF R W + G+ +W Sbjct: 336 VCRLVRESSRVAAWRLGPSGLSTED--SRRISFHIRFNRPSSLFARCWLLVEGETETWVI 393 Query: 246 NSIMRRCGWHI*SKA--VIFFLSR--RWCIYFSSQSGHEGRVLI 365 N + R+CG H ++ VI F + + F+ + G E VL+ Sbjct: 394 NELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLV 437
>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)| Length = 1412 Score = 30.0 bits (66), Expect = 4.0 Identities = 25/97 (25%), Positives = 39/97 (40%) Frame = -3 Query: 389 SPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVGGPASQLPKRKP 210 +P ++ AT + L +VD S + N +S PP +A+ A+ + + Sbjct: 1306 APASSSSGSNSATPLLEL--QVDIADSAQPLNLSKKSPTPPPSKLHALVAAANAVQRYPT 1363 Query: 209 LSEEEIEAIMQGGVF*YCFPTSCTFSGAPISPMPCSI 99 LS + GG P S S AP S P S+ Sbjct: 1364 LSADVTVTASNGG------PPSAAASPAPSSSPPASV 1394
>RT36_HUMAN (P82909) Mitochondrial 28S ribosomal protein S36 (S36mt) (MRP-S36)| Length = 103 Score = 30.0 bits (66), Expect = 4.0 Identities = 29/89 (32%), Positives = 41/89 (46%) Frame = -3 Query: 437 PRIPMIRFPKRHLKVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPS 258 P P+IRFP R P P ++ A + A L S + + S G K PP + Sbjct: 18 PHTPLIRFPDRRDN-PKPNVSE-ALRSAGLPSH-SSVISQHSKGSKSPDLLMYQGPPDTA 74 Query: 257 HNAVGGPASQLPKRKPLSEEEIEAIMQGG 171 P Q +RK +S+EE+E I +GG Sbjct: 75 EIIKTLP--QKYRRKLVSQEEMEFIQRGG 101
>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) Length = 2472 Score = 29.6 bits (65), Expect = 5.3 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = -3 Query: 422 IRFPKRHLKVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVG 243 + PK +V P A+ HA L G + P+S K+ RS PP+ SH A+ Sbjct: 1894 VLLPKETSRVARPERARVDAGHAFLTKPPGRE---PASSPSKSSEPRSLAPPSSSHTAIA 1950 Query: 242 -GPASQL 225 PA L Sbjct: 1951 RTPAKNL 1957
>IF2_BDEBA (Q6MMS6) Translation initiation factor IF-2| Length = 975 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = -3 Query: 398 KVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVGGPASQLPK 219 + P AA P ++ A + + K +AP+ EK +VP AP A PA Q K Sbjct: 148 ETPEVEAAAPVEEKAPV--KAAVKEEAPAPVEKPEPVVAKEVPAAPVAAAPEAPAPQARK 205 Query: 218 RK 213 ++ Sbjct: 206 KE 207
>CDPK3_ORYSA (P53684) Calcium-dependent protein kinase, isoform 11 (EC 2.7.11.1)| (CDPK 11) Length = 542 Score = 29.6 bits (65), Expect = 5.3 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -2 Query: 504 DFHRRVPRRNFVGLLPGFQHKDAAHSNDQIPQEASQSPIPTSGAACRSARDP 349 D+H R PR + VG + G + D +D P+ + PT+ + R DP Sbjct: 13 DYHNRFPREHAVGYVQGDSYLDLKKFDDTWPEVNNFK--PTAASILRRGLDP 62
>BIN1_HUMAN (O00499) Myc box-dependent-interacting protein 1 (Bridging| integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-interacting protein 1) Length = 593 Score = 29.3 bits (64), Expect = 6.9 Identities = 25/83 (30%), Positives = 35/83 (42%) Frame = -3 Query: 428 PMIRFPKRHLKVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNA 249 P P + K PSPP PA AT R+ + + P+ G + +P +PS Sbjct: 285 PSDNAPAKGNKSPSPPDGSPA---ATPEIRVNHEPE-PAGGATPG----ATLPKSPSQLR 336 Query: 248 VGGPASQLPKRKPLSEEEIEAIM 180 G P PK P E + E I+ Sbjct: 337 KGPPVPPPPKHTPSKEVKQEQIL 359
>IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2| Length = 880 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/96 (22%), Positives = 35/96 (36%) Frame = -3 Query: 467 DCSPDSSTKMPRIPMIRFPKRHLKVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYR 288 D S S P+ + K P P P D + + R +P+ E+ + Sbjct: 49 DPSTPSPAASPKKETVAESDPSSKPPVMPLPLPDDSGQSPIVRPAPSSHSPAKREESPGK 108 Query: 287 FRSDVPPAPSHNAVGGPASQLPKRKPLSEEEIEAIM 180 + PP GG +S P R P +E+ I+ Sbjct: 109 QDAGRPPRDKDTRQGGGSSYPPSRSPFQKEDSNIIV 144
>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 493 Score = 29.3 bits (64), Expect = 6.9 Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 4/96 (4%) Frame = -3 Query: 452 SSTKMPRIPMIRFPKRHL----KVPSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRF 285 SS+ PR P+ P R L P PP H + ++ P Sbjct: 235 SSSPFPRPPLPPTPSRALDDKPPPPPPPVGNRPSMHREAVPPPPSQTSKPPVPSTPRPGL 294 Query: 284 RSDVPPAPSHNAVGGPASQLPKRKPLSEEEIEAIMQ 177 S PP P + GP P P S +EI + Q Sbjct: 295 GSQAPPPPPPPSRPGP----PPLPPASNDEIPRLPQ 326
>PITX1_DROME (O18400) Pituitary homeobox 1 homolog (D-PTX1)| Length = 509 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Frame = +1 Query: 76 GSCAKRLRMLHGIGLIGAPLKVQLVGKQYQ---KTPPCMIASISSSESGLRL 222 GS L +G +GAP Y PCM +S+SSS + LRL Sbjct: 416 GSMGSSLSNTSNVGAVGAPCPYTTPANPYMYRSAAEPCMSSSMSSSIATLRL 467
>PERM_HUMAN (P05164) Myeloperoxidase precursor (EC 1.11.1.7) (MPO) [Contains:| 89 kDa myeloperoxidase; 84 kDa myeloperoxidase; Myeloperoxidase light chain; Myeloperoxidase heavy chain] Length = 745 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = -3 Query: 110 PCSIRNRFAQEPCYLWNSCFWS--PELTNRHT 21 PC + NR A+ PC+L S PELT+ HT Sbjct: 386 PCLLTNRSARIPCFLAGDTRSSEMPELTSMHT 417
>PIAS4_HUMAN (Q8N2W9) Protein inhibitor of activated STAT protein 4 (Protein| inhibitor of activated STAT protein gamma) (PIAS-gamma) (PIASy) Length = 510 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = -3 Query: 476 ISLDCSPDSSTKMPRIPMIRFPKRHLKVPSPPAAQPAD---QHATLMSRLGAKVDAPSSG 306 + DCSP+ K+ + R+ K++ + P+P +P D H+T R GA P +G Sbjct: 46 VQFDCSPELFKKIKELYETRYAKKNSE-PAPQPHRPLDPLTMHST-YDRAGAVPRTPLAG 103 Query: 305 EKKNY 291 +Y Sbjct: 104 PNIDY 108
>STF1_MACEU (Q95L87) Steroidogenic factor 1 (STF-1) (SF-1)| Length = 463 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/73 (26%), Positives = 26/73 (35%) Frame = -3 Query: 503 ISIEGFRGEISLDCSPDSSTKMPRIPMIRFPKRHLKVPSPPAAQPADQHATLMSRLGAKV 324 I GF+ E P T P P + + L P+PPA P D G + Sbjct: 113 IRANGFKLETGPSMGPPPQTDYPLAPALHPGAKGL-APAPPAGPPGDYERGPYGPPGVPM 171 Query: 323 DAPSSGEKKNYRF 285 P+ G Y + Sbjct: 172 AVPTHGPLAGYLY 184
>PNS1_CRYNE (Q5KQ32) Protein PNS1| Length = 551 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = -3 Query: 392 PSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVGG 240 P PP P DQ+ G + P G+ NY + P A ++ GG Sbjct: 21 PPPPGGPPQDQNG------GKQEYVPPQGQPPNYNMKPSQPYASTNPETGG 65
>YL18_CAEEL (Q11103) Hypothetical protein C02F12.8| Length = 687 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -3 Query: 395 VPSPPAAQPADQHATLMSRLGAKVDAPSSGEKK---NYRFRSDVPPAPSHNAVGGP 237 VP+PP P A ++S+ + P K Y F S + P+PS++ GP Sbjct: 187 VPAPPTMMPVG--AVMVSQGSYSMSPPQIDTSKPPSGYGFSSPIFPSPSYSQYSGP 240
>M4K3_RAT (Q924I2) Mitogen-activated protein kinase kinase kinase kinase 3| (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 3) (MEK kinase kinase 3) (MEKKK 3) (Germinal center kinase-related protein kinase) (GLK) (Fragment) Length = 862 Score = 28.9 bits (63), Expect = 9.0 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Frame = -3 Query: 410 KRHLKVPSPPAAQ----PADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVG 243 K + P PP + P D H++ S G PSSG P PSH Sbjct: 396 KAKVPPPLPPKPKSISIPQDTHSSEDSNQGTIKRCPSSGS----------PAKPSHVPPR 445 Query: 242 GPASQLPKRKP 210 P +LP +KP Sbjct: 446 PPPPRLPPQKP 456
>KPC1_YEAST (P24583) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1151 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Frame = -3 Query: 467 DCSPDSSTKMPRIPMIRFPKRHLKVPSPPAA---QPADQHATLMSRLGAKVDAPSSGEKK 297 D SP + P+ P++H K PSP P QH ++ + K+ + G +K Sbjct: 575 DLSPSKLAERANAPLPPQPRKHDKTPSPQKVGRDSPTKQHDPIIDK---KISLQTHGREK 631 Query: 296 NYRF 285 +F Sbjct: 632 LNKF 635
>TSC1_RAT (Q9Z136) Hamartin (Tuberous sclerosis 1 protein homolog)| Length = 1163 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/69 (24%), Positives = 22/69 (31%) Frame = -3 Query: 392 PSPPAAQPADQHATLMSRLGAKVDAPSSGEKKNYRFRSDVPPAPSHNAVGGPASQLPKRK 213 P+ P PAD G + PP P + GPASQ Sbjct: 359 PTSPGNVPADLSHPYSKAFGTTTGGKGTPSGTPATSPPPAPPCPQDDCAHGPASQASATP 418 Query: 212 PLSEEEIEA 186 P EE ++ Sbjct: 419 PRKEERADS 427 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,222,411 Number of Sequences: 219361 Number of extensions: 1942697 Number of successful extensions: 6071 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 5773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6065 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
