ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21o08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D06, full insert sequence Length = 600 Score = 196 bits (99), Expect = 5e-47 Identities = 245/296 (82%), Gaps = 9/296 (3%) Strand = Plus / Minus Query: 156 gcaatatcagaagacaccgccttgcatgatagcttcaatctcttcctcagagagtggttt 215 |||||||||| ||| ||| |||||||||||||| ||||| |||||||| || ||||| || Sbjct: 366 gcaatatcagtagataccaccttgcatgatagcctcaatttcttcctctgacagtggctt 307 Query: 216 gcgcttgggaagttgtgaagctggccctccaacagcattatgagaaggtgcgggtggcac 275 ||| || ||||| |||||||||||||||||||||| ||| |||||||| || ||||| Sbjct: 306 gcgtttaggaaggagtgaagctggccctccaacagccgtataagaaggtggggaaggcac 247 Query: 276 atctgatctaaagcggtaannnnnnnnctctcc---agaagatggtgcatctactttagc 332 ||||||||||||||||||| ||| || |||||||||||| ||| |||| | Sbjct: 246 atctgatctaaagcggtaatttttaatctccccggaagaagatggtgcctctgatttaac 187 Query: 333 tcccaatcgggacatgagggtcgcgtgctgatctgcaggctgcgccgct------ggtgg 386 |||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||| Sbjct: 186 tcccaatcgggacaagagggacgcgtgctgatctgcaggttgcgccgctggtgggggtgg 127 Query: 387 ggatgggactttgagatgcctcttggggaatctgatcattggaatgcgcggcatct 442 |||||||| ||||||| |||||||||||| |||||| ||||| |||||||||| Sbjct: 126 ggatgggatcttgagattcctcttggggaacttgatcagcggaatccgcggcatct 71
>dbj|AK073116.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020J17, full insert sequence Length = 609 Score = 196 bits (99), Expect = 5e-47 Identities = 245/296 (82%), Gaps = 9/296 (3%) Strand = Plus / Minus Query: 156 gcaatatcagaagacaccgccttgcatgatagcttcaatctcttcctcagagagtggttt 215 |||||||||| ||| ||| |||||||||||||| ||||| |||||||| || ||||| || Sbjct: 393 gcaatatcagtagataccaccttgcatgatagcctcaatttcttcctctgacagtggctt 334 Query: 216 gcgcttgggaagttgtgaagctggccctccaacagcattatgagaaggtgcgggtggcac 275 ||| || ||||| |||||||||||||||||||||| ||| |||||||| || ||||| Sbjct: 333 gcgtttaggaaggagtgaagctggccctccaacagccgtataagaaggtggggaaggcac 274 Query: 276 atctgatctaaagcggtaannnnnnnnctctcc---agaagatggtgcatctactttagc 332 ||||||||||||||||||| ||| || |||||||||||| ||| |||| | Sbjct: 273 atctgatctaaagcggtaatttttaatctccccggaagaagatggtgcctctgatttaac 214 Query: 333 tcccaatcgggacatgagggtcgcgtgctgatctgcaggctgcgccgct------ggtgg 386 |||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||| Sbjct: 213 tcccaatcgggacaagagggacgcgtgctgatctgcaggttgcgccgctggtgggggtgg 154 Query: 387 ggatgggactttgagatgcctcttggggaatctgatcattggaatgcgcggcatct 442 |||||||| ||||||| |||||||||||| |||||| ||||| |||||||||| Sbjct: 153 ggatgggatcttgagattcctcttggggaacttgatcagcggaatccgcggcatct 98
>gb|AY105657.1| Zea mays PCO062824 mRNA sequence Length = 817 Score = 137 bits (69), Expect = 4e-29 Identities = 216/267 (80%), Gaps = 3/267 (1%) Strand = Plus / Minus Query: 179 gcatgatagcttcaatctcttcctcagagagtggtttgcgcttgggaagttgtgaagctg 238 |||| ||||| ||||||||||| |||| || ||||| ||||| ||||| |||||||| Sbjct: 518 gcataatagcctcaatctcttcttcagtcagaggtttacgcttaggaaggagtgaagctt 459 Query: 239 gccctccaacagcattatgagaaggtgcgggtggcacatctgatctaaagcggtaannnn 298 | ||||| |||||| |||| || |||| || ||||||||||| |||||||||||| Sbjct: 458 gacctcctacagcagtatgcgacggtggggaaggcacatctgaactaaagcggtaatttt 399 Query: 299 nnnnctctccagaagatggtgcatctactttagctcccaatcgggacatgagggtcgcgt 358 | |||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||| Sbjct: 398 taatccctccagaagatggtgcctctgctttagcccccaaccgggacatgagggtcgcgt 339 Query: 359 gctgatctgcaggctgcgccg---ctggtggggatgggactttgagatgcctcttgggga 415 |||||||||| || |||| || |||| | ||||||| |||| |||| || |||||||| Sbjct: 338 gctgatctgcgggttgcgacggcactggcgcggatggggctttcagattccgcttgggga 279 Query: 416 atctgatcattggaatgcgcggcatct 442 | |||||| || || |||||||||| Sbjct: 278 acttgatcagagggatccgcggcatct 252
>gb|AY105583.1| Zea mays PCO062823 mRNA sequence Length = 567 Score = 131 bits (66), Expect = 3e-27 Identities = 157/190 (82%) Strand = Plus / Minus Query: 179 gcatgatagcttcaatctcttcctcagagagtggtttgcgcttgggaagttgtgaagctg 238 |||| ||||| ||||||||||| |||| || ||||||||||| ||||| ||||||||| Sbjct: 421 gcataatagcctcaatctcttcttcagtcaggggtttgcgcttaggaaggagtgaagctg 362 Query: 239 gccctccaacagcattatgagaaggtgcgggtggcacatctgatctaaagcggtaannnn 298 | ||||| || ||| |||||||||||| | |||||||| ||||||||||||||| Sbjct: 361 gacctcctacggcagtatgagaaggtgggcaaggcacatcagatctaaagcggtaatttt 302 Query: 299 nnnnctctccagaagatggtgcatctactttagctcccaatcgggacatgagggtcgcgt 358 |||||||||||||||||| ||| ||||||| || || ||| ||||||||||||||| Sbjct: 301 taatctctccagaagatggtgcctctgctttagcccctaaccggaacatgagggtcgcgt 242 Query: 359 gctgatctgc 368 |||| ||||| Sbjct: 241 gctggtctgc 232
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Minus Query: 180 catgatagcttcaatctcttcctcagagagtggtttgcgcttgggaagttgtgaagctgg 239 ||||||||| ||||| |||||||| || ||||| ||||| || ||||| |||||||||| Sbjct: 19385282 catgatagcctcaatttcttcctctgacagtggcttgcgtttaggaaggagtgaagctgg 19385223 Query: 240 ccctccaacagcattatgagaaggtgcgggtggcacatctgatctaaagcggtaa 294 |||||||||||| ||| |||||||| || |||||||||||||||||||||||| Sbjct: 19385222 ccctccaacagccgtataagaaggtggggaaggcacatctgatctaaagcggtaa 19385168 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 334 cccaatcgggacatgagggtcgcgtgctgatctgcaggctgcgccgctg 382 ||||||||||||| ||||| |||||||||||||||||| |||||||||| Sbjct: 19383191 cccaatcgggacaagagggacgcgtgctgatctgcaggttgcgccgctg 19383143 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 382 ggtggggatgggactttgagatgcctcttggggaatctgatcattggaatgcgcggcatc 441 ||||||||||||| ||||||| |||||||||||| |||||| ||||| ||||||||| Sbjct: 19383001 ggtggggatgggatcttgagattcctcttggggaacttgatcagcggaatccgcggcatc 19382942 Query: 442 t 442 | Sbjct: 19382941 t 19382941
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Minus Query: 180 catgatagcttcaatctcttcctcagagagtggtttgcgcttgggaagttgtgaagctgg 239 ||||||||| ||||| |||||||| || ||||| ||||| || ||||| |||||||||| Sbjct: 90055 catgatagcctcaatttcttcctctgacagtggcttgcgtttaggaaggagtgaagctgg 89996 Query: 240 ccctccaacagcattatgagaaggtgcgggtggcacatctgatctaaagcggtaa 294 |||||||||||| ||| |||||||| || |||||||||||||||||||||||| Sbjct: 89995 ccctccaacagccgtataagaaggtggggaaggcacatctgatctaaagcggtaa 89941 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 334 cccaatcgggacatgagggtcgcgtgctgatctgcaggctgcgccgctg 382 ||||||||||||| ||||| |||||||||||||||||| |||||||||| Sbjct: 87964 cccaatcgggacaagagggacgcgtgctgatctgcaggttgcgccgctg 87916 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 382 ggtggggatgggactttgagatgcctcttggggaatctgatcattggaatgcgcggcatc 441 ||||||||||||| ||||||| |||||||||||| |||||| ||||| ||||||||| Sbjct: 87774 ggtggggatgggatcttgagattcctcttggggaacttgatcagcggaatccgcggcatc 87715 Query: 442 t 442 | Sbjct: 87714 t 87714
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Minus Query: 180 catgatagcttcaatctcttcctcagagagtggtttgcgcttgggaagttgtgaagctgg 239 ||||||||| ||||| |||||||| || ||||| ||||| || ||||| |||||||||| Sbjct: 3691 catgatagcctcaatttcttcctctgacagtggcttgcgtttaggaaggagtgaagctgg 3632 Query: 240 ccctccaacagcattatgagaaggtgcgggtggcacatctgatctaaagcggtaa 294 |||||||||||| ||| |||||||| || |||||||||||||||||||||||| Sbjct: 3631 ccctccaacagccgtataagaaggtggggaaggcacatctgatctaaagcggtaa 3577 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 334 cccaatcgggacatgagggtcgcgtgctgatctgcaggctgcgccgctg 382 ||||||||||||| ||||| |||||||||||||||||| |||||||||| Sbjct: 1600 cccaatcgggacaagagggacgcgtgctgatctgcaggttgcgccgctg 1552 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 382 ggtggggatgggactttgagatgcctcttggggaatctgatcattggaatgcgcggcatc 441 ||||||||||||| ||||||| |||||||||||| |||||| ||||| ||||||||| Sbjct: 1410 ggtggggatgggatcttgagattcctcttggggaacttgatcagcggaatccgcggcatc 1351 Query: 442 t 442 | Sbjct: 1350 t 1350
>dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT43I02, TM0210a, complete sequence Length = 55211 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 aacatggctcttgtgcaaaac 91 ||||||||||||||||||||| Sbjct: 35530 aacatggctcttgtgcaaaac 35550
>emb|CR318607.7| Zebrafish DNA sequence from clone CH211-237H22 in linkage group 14, complete sequence Length = 111412 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 cttgtgcaaaacggttacga 99 |||||||||||||||||||| Sbjct: 26631 cttgtgcaaaacggttacga 26650
>gb|AC153514.8| Mus musculus 10 BAC RP23-406O24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 189633 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 ttcaatctcttcctcagaga 208 |||||||||||||||||||| Sbjct: 120970 ttcaatctcttcctcagaga 120951
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 ctccagaagatggtgcatct 324 |||||||||||||||||||| Sbjct: 2657341 ctccagaagatggtgcatct 2657360
>emb|AL138498.5|CNS01DWT Human chromosome 14 DNA sequence BAC R-168D12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158885 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aaggtgcagctggtggggaa 155 |||||||||||||||||||| Sbjct: 33235 aaggtgcagctggtggggaa 33216 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,631,350 Number of Sequences: 3902068 Number of extensions: 3631350 Number of successful extensions: 68265 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68209 Number of HSP's gapped (non-prelim): 56 length of query: 523 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 500 effective length of database: 17,143,297,704 effective search space: 8571648852000 effective search space used: 8571648852000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
