Clone Name | rbasd21o07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_474291.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 256 bits (129), Expect = 7e-65 Identities = 210/237 (88%) Strand = Plus / Minus Query: 289 gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 348 ||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||| Sbjct: 1376 gtgcgcttcaaagccttcacgctcaatgggctgttcttgctcgctgagcaggttccagcc 1317 Query: 349 ctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtg 408 | | |||||||||| |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 1316 cgggtgttgcagacagggtagtcaggcgggcagcagctggcatgatccttgcagcaggtt 1257 Query: 409 gcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgagcag 468 |||||||| ||||||| |||||||| |||| ||| || |||||||||||||| | |||| Sbjct: 1256 gcaccttcaactgggcaacagccccaaaccaagcagagattcctgaagccgaatgcgcag 1197 Query: 469 cagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggcg 525 |||||||||||||| || ||||| |||||||| || |||||||| |||||||||||| Sbjct: 1196 cagcaggtgctgcccgctgggcaagagaagttatcatcgcagacatggtcaggggcg 1140
>dbj|AK109371.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-E09, full insert sequence Length = 1766 Score = 256 bits (129), Expect = 7e-65 Identities = 210/237 (88%) Strand = Plus / Minus Query: 289 gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 348 ||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||| Sbjct: 1480 gtgcgcttcaaagccttcacgctcaatgggctgttcttgctcgctgagcaggttccagcc 1421 Query: 349 ctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtg 408 | | |||||||||| |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 1420 cgggtgttgcagacagggtagtcaggcgggcagcagctggcatgatccttgcagcaggtt 1361 Query: 409 gcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgagcag 468 |||||||| ||||||| |||||||| |||| ||| || |||||||||||||| | |||| Sbjct: 1360 gcaccttcaactgggcaacagccccaaaccaagcagagattcctgaagccgaatgcgcag 1301 Query: 469 cagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggcg 525 |||||||||||||| || ||||| |||||||| || |||||||| |||||||||||| Sbjct: 1300 cagcaggtgctgcccgctgggcaagagaagttatcatcgcagacatggtcaggggcg 1244
>dbj|D90407.1|RICOZB Oryza sativa (japonica cultivar-group) mRNA for oryzain beta, complete cds Length = 1675 Score = 256 bits (129), Expect = 7e-65 Identities = 210/237 (88%) Strand = Plus / Minus Query: 289 gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 348 ||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||| Sbjct: 1392 gtgcgcttcaaagccttcacgctcaatgggctgttcttgctcgctgagcaggttccagcc 1333 Query: 349 ctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtg 408 | | |||||||||| |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 1332 cgggtgttgcagacagggtagtcaggcgggcagcagctggcatgatccttgcagcaggtt 1273 Query: 409 gcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgagcag 468 |||||||| ||||||| |||||||| |||| ||| || |||||||||||||| | |||| Sbjct: 1272 gcaccttcaactgggcaacagccccaaaccaagcagagattcctgaagccgaatgcgcag 1213 Query: 469 cagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggcg 525 |||||||||||||| || ||||| |||||||| || |||||||| |||||||||||| Sbjct: 1212 cagcaggtgctgcccgctgggcaagagaagttatcatcgcagacatggtcaggggcg 1156
>gb|AF366556.1| Oryza sativa saline responsive OSSRIII protein mRNA, partial cds Length = 368 Score = 248 bits (125), Expect = 2e-62 Identities = 209/237 (88%) Strand = Plus / Minus Query: 289 gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 348 ||||| ||||||||||||||||||| |||||||||||| |||||||||| || |||||| Sbjct: 349 gtgcgtttcaaagccttcacgctcaatgggctgttcttgctcgctgagcaggttccagcc 290 Query: 349 ctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtg 408 | | |||||||||| |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 289 cgggtgttgcagacagggtagtcaggcgggcagcagctggcatgatccttgcagcaggtt 230 Query: 409 gcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgagcag 468 |||||||| ||||||| |||||||| |||| ||| || |||||||||||||| | |||| Sbjct: 229 gcaccttcaactgggcaacagccccaaaccaagcagagattcctgaagccgaatgcgcag 170 Query: 469 cagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggcg 525 |||||||||||||| || ||||| |||||||| || |||||||| |||||||||||| Sbjct: 169 cagcaggtgctgcccgctgggcaagagaagttatcatcgcagacatggtcaggggcg 113
>dbj|AK099358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044I21, full insert sequence Length = 1742 Score = 248 bits (125), Expect = 2e-62 Identities = 209/237 (88%) Strand = Plus / Minus Query: 289 gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 348 ||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||| Sbjct: 1456 gtgcgcttcaaagccttcacgctcaatgggctgttcttgctcgctgagcaggttccagcc 1397 Query: 349 ctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtg 408 | | |||||||||| |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 1396 cgggtgttgcagacagggtagtcaggcgggcagcagctggcatgatccttgcagcaggtt 1337 Query: 409 gcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgagcag 468 |||||||| ||||||| |||||| | |||| ||| || |||||||||||||| | |||| Sbjct: 1336 gcaccttcaactgggcaacagcccgaaaccaagcagagattcctgaagccgaatgcgcag 1277 Query: 469 cagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggcg 525 |||||||||||||| || ||||| |||||||| || |||||||| |||||||||||| Sbjct: 1276 cagcaggtgctgcccgctgggcaagagaagttatcatcgcagacatggtcaggggcg 1220
>dbj|AK073373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027D09, full insert sequence Length = 1753 Score = 248 bits (125), Expect = 2e-62 Identities = 209/237 (88%) Strand = Plus / Minus Query: 289 gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 348 |||||||||||||||||||||| || |||||||||||| |||||||||| || |||||| Sbjct: 1481 gtgcgcttcaaagccttcacgcacaatgggctgttcttgctcgctgagcaggttccagcc 1422 Query: 349 ctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtg 408 | | |||||||||| |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 1421 cgggtgttgcagacagggtagtcaggcgggcagcagctggcatgatccttgcagcaggtt 1362 Query: 409 gcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgagcag 468 |||||||| ||||||| |||||||| |||| ||| || |||||||||||||| | |||| Sbjct: 1361 gcaccttcaactgggcaacagccccaaaccaagcagagattcctgaagccgaatgcgcag 1302 Query: 469 cagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggcg 525 |||||||||||||| || ||||| |||||||| || |||||||| |||||||||||| Sbjct: 1301 cagcaggtgctgcccgctgggcaagagaagttatcatcgcagacatggtcaggggcg 1245
>gb|AY106278.1| Zea mays PCO137999 mRNA sequence Length = 1382 Score = 228 bits (115), Expect = 2e-56 Identities = 208/239 (87%) Strand = Plus / Minus Query: 286 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 345 |||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| ||| Sbjct: 1133 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 1074 Query: 346 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 405 || |||| ||||||||| |||||| |||| ||||||||||||| ||||||||||||||| Sbjct: 1073 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 1014 Query: 406 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 465 ||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| | Sbjct: 1013 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 954 Query: 466 cagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggc 524 ||||||||||||||||| || | ||| |||||||||||||||||||| | ||||||||| Sbjct: 953 cagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacattgtcaggggc 895
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence Length = 190432 Score = 198 bits (100), Expect = 1e-47 Identities = 172/196 (87%) Strand = Plus / Plus Query: 330 cgctgagcaagtcccagccctgatgttgcagacggggtagtccggtgggcagcagctgga 389 ||||||||| || ||||||| | |||||||||| |||||||| || ||||||||||||| Sbjct: 119183 cgctgagcaggttccagcccgggtgttgcagacagggtagtcaggcgggcagcagctggc 119242 Query: 390 atgatccttgcagcaggtggcaccttccgctgggcagcagccccacaccaggcaaaggtt 449 |||||||||||||||||| |||||||| ||||||| |||||||| |||| ||| || || Sbjct: 119243 atgatccttgcagcaggttgcaccttcaactgggcaacagccccaaaccaagcagagatt 119302 Query: 450 cctgaagccgaacgagcagcagcaggtgctgcctgcagggcatgagaagttctcgtcgca 509 |||||||||||| | |||||||||||||||||| || ||||| |||||||| || ||||| Sbjct: 119303 cctgaagccgaatgcgcagcagcaggtgctgcccgctgggcaagagaagttatcatcgca 119362 Query: 510 gacgtggtcaggggcg 525 ||| |||||||||||| Sbjct: 119363 gacatggtcaggggcg 119378 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||||||| || ||| ||||||||| |||| |||||||||||||||||||| || Sbjct: 152632 gttgcagacgggatactccttggggcagcaggtggagtgatccttgcagcaggtggcgcc 152573 Query: 414 ttccgctgggcagcagccccacaccaggcaaaggttcctga 454 || | |||||||| |||||||| | ||| ||||||||| Sbjct: 152572 ctcgacggggcagcatccccacacgatgcagtggttcctga 152532 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 289 gtgcgcttcaaagccttcacgctcagcgggctgttcttg 327 ||||||||||||||||||||||||| |||||||||||| Sbjct: 118832 gtgcgcttcaaagccttcacgctcaatgggctgttcttg 118870
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 198 bits (100), Expect = 1e-47 Identities = 172/196 (87%) Strand = Plus / Plus Query: 330 cgctgagcaagtcccagccctgatgttgcagacggggtagtccggtgggcagcagctgga 389 ||||||||| || ||||||| | |||||||||| |||||||| || ||||||||||||| Sbjct: 34207801 cgctgagcaggttccagcccgggtgttgcagacagggtagtcaggcgggcagcagctggc 34207860 Query: 390 atgatccttgcagcaggtggcaccttccgctgggcagcagccccacaccaggcaaaggtt 449 |||||||||||||||||| |||||||| ||||||| |||||||| |||| ||| || || Sbjct: 34207861 atgatccttgcagcaggttgcaccttcaactgggcaacagccccaaaccaagcagagatt 34207920 Query: 450 cctgaagccgaacgagcagcagcaggtgctgcctgcagggcatgagaagttctcgtcgca 509 |||||||||||| | |||||||||||||||||| || ||||| |||||||| || ||||| Sbjct: 34207921 cctgaagccgaatgcgcagcagcaggtgctgcccgctgggcaagagaagttatcatcgca 34207980 Query: 510 gacgtggtcaggggcg 525 ||| |||||||||||| Sbjct: 34207981 gacatggtcaggggcg 34207996 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||||||| || ||| ||||||||| |||| |||||||||||||||||||| || Sbjct: 34241250 gttgcagacgggatactccttggggcagcaggtggagtgatccttgcagcaggtggcgcc 34241191 Query: 414 ttccgctgggcagcagccccacaccaggcaaaggttcctga 454 || | |||||||| |||||||| | ||| ||||||||| Sbjct: 34241190 ctcgacggggcagcatccccacacgatgcagtggttcctga 34241150 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 289 gtgcgcttcaaagccttcacgctcagcgggctgttcttg 327 ||||||||||||||||||||||||| |||||||||||| Sbjct: 34207450 gtgcgcttcaaagccttcacgctcaatgggctgttcttg 34207488 Score = 48.1 bits (24), Expect = 0.030 Identities = 66/80 (82%) Strand = Plus / Plus Query: 355 ttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacct 414 ||||||| |||||| || | |||||||||||| | ||||| | |||||||||||| || Sbjct: 33157777 ttgcagatggggtactcgtgagggcagcagctgtagtgatcatcgcagcaggtggcgccc 33157836 Query: 415 tccgctgggcagcagcccca 434 || ||||||||||||||| Sbjct: 33157837 tcgagtgggcagcagcccca 33157856
>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete sequence Length = 101125 Score = 198 bits (100), Expect = 1e-47 Identities = 172/196 (87%) Strand = Plus / Plus Query: 330 cgctgagcaagtcccagccctgatgttgcagacggggtagtccggtgggcagcagctgga 389 ||||||||| || ||||||| | |||||||||| |||||||| || ||||||||||||| Sbjct: 58503 cgctgagcaggttccagcccgggtgttgcagacagggtagtcaggcgggcagcagctggc 58562 Query: 390 atgatccttgcagcaggtggcaccttccgctgggcagcagccccacaccaggcaaaggtt 449 |||||||||||||||||| |||||||| ||||||| |||||||| |||| ||| || || Sbjct: 58563 atgatccttgcagcaggttgcaccttcaactgggcaacagccccaaaccaagcagagatt 58622 Query: 450 cctgaagccgaacgagcagcagcaggtgctgcctgcagggcatgagaagttctcgtcgca 509 |||||||||||| | |||||||||||||||||| || ||||| |||||||| || ||||| Sbjct: 58623 cctgaagccgaatgcgcagcagcaggtgctgcccgctgggcaagagaagttatcatcgca 58682 Query: 510 gacgtggtcaggggcg 525 ||| |||||||||||| Sbjct: 58683 gacatggtcaggggcg 58698 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 289 gtgcgcttcaaagccttcacgctcagcgggctgttcttg 327 ||||||||||||||||||||||||| |||||||||||| Sbjct: 58152 gtgcgcttcaaagccttcacgctcaatgggctgttcttg 58190
>ref|XM_474296.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 315 cgggctgttcttggtcgctgagcaagtcccagccctgatgttgcagacggggtagtccgg 374 ||||||||||||| || |||||||| | |||| || |||||||||||| || ||| Sbjct: 1377 cgggctgttcttgctcttggagcaagtgcgagccttggcgttgcagacgggatactcctt 1318 Query: 375 tgggcagcagctggaatgatccttgcagcaggtggcaccttccgctgggcagcagcccca 434 ||||||||| |||| |||||||||||||||||||| || || | |||||||| ||||| Sbjct: 1317 ggggcagcaggtggagtgatccttgcagcaggtggcgccctcgacggggcagcatcccca 1258 Query: 435 caccaggcaaaggttcctga 454 ||| | ||| ||||||||| Sbjct: 1257 cacgatgcagtggttcctga 1238
>dbj|AK107506.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E06, full insert sequence Length = 1722 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 315 cgggctgttcttggtcgctgagcaagtcccagccctgatgttgcagacggggtagtccgg 374 ||||||||||||| || |||||||| | |||| || |||||||||||| || ||| Sbjct: 1488 cgggctgttcttgctcttggagcaagtgcgagccttggcgttgcagacgggatactcctt 1429 Query: 375 tgggcagcagctggaatgatccttgcagcaggtggcaccttccgctgggcagcagcccca 434 ||||||||| |||| |||||||||||||||||||| || || | |||||||| ||||| Sbjct: 1428 ggggcagcaggtggagtgatccttgcagcaggtggcgccctcgacggggcagcatcccca 1369 Query: 435 caccaggcaaaggttcctga 454 ||| | ||| ||||||||| Sbjct: 1368 cacgatgcagtggttcctga 1349
>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete sequence Length = 95419 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||||||| || ||| ||||||||| |||| |||||||||||||||||||| || Sbjct: 23889 gttgcagacgggatactccttggggcagcaggtggagtgatccttgcagcaggtggcgcc 23830 Query: 414 ttccgctgggcagcagccccacaccaggcaaaggttcctga 454 || | |||||||| |||||||| | ||| ||||||||| Sbjct: 23829 ctcgacggggcagcatccccacacgatgcagtggttcctga 23789
>gb|AY103676.1| Zea mays PCO102242 mRNA sequence Length = 1878 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 348 cctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggt 407 ||||| |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||| Sbjct: 1414 cctgacgttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcgcagcaggt 1355 Query: 408 ggcaccttccgctgggcagcagcccca 434 ||| || || |||||||||||||| Sbjct: 1354 ggcgccctcgagcgggcagcagcccca 1328
>gb|AF019147.1|AF019147 Zea mays cysteine proteinase Mir3 (mir3) mRNA, complete cds Length = 1830 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 348 cctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggt 407 ||||| |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||| Sbjct: 1379 cctgacgttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcgcagcaggt 1320 Query: 408 ggcaccttccgctgggcagcagcccca 434 ||| || || |||||||||||||| Sbjct: 1319 ggcgccctcgagcgggcagcagcccca 1293
>dbj|AB020961.1| Zea mays mRNA for cysteine protease component of protease-inhibitor complex, complete cds Length = 1828 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 348 cctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggt 407 ||||| |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||| Sbjct: 1378 cctgacgttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcgcagcaggt 1319 Query: 408 ggcaccttccgctgggcagcagcccca 434 ||| || || |||||||||||||| Sbjct: 1318 ggcgccctcgagcgggcagcagcccca 1292
>dbj|AB098627.1| Daucus carota DcCysP4 mRNA for cysteine protease, complete cds Length = 1668 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 374 gtgggcagcagctggaatgatccttgcagcaggtggc 410 |||||||||||||||| ||||| | |||||||||||| Sbjct: 1254 gtgggcagcagctggagtgatcatcgcagcaggtggc 1218
>ref|XM_474131.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1377 Score = 48.1 bits (24), Expect = 0.030 Identities = 66/80 (82%) Strand = Plus / Minus Query: 355 ttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacct 414 ||||||| |||||| || | |||||||||||| | ||||| | |||||||||||| || Sbjct: 1253 ttgcagatggggtactcgtgagggcagcagctgtagtgatcatcgcagcaggtggcgccc 1194 Query: 415 tccgctgggcagcagcccca 434 || ||||||||||||||| Sbjct: 1193 tcgagtgggcagcagcccca 1174
>ref|XM_415920.1| PREDICTED: Gallus gallus similar to KIAA0664 protein (LOC417675), mRNA Length = 5549 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 194 aggagggagaaaagctccacacag 217 |||||||||||||||||||||||| Sbjct: 978 aggagggagaaaagctccacacag 955
>dbj|AK098910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H09, full insert sequence Length = 1753 Score = 48.1 bits (24), Expect = 0.030 Identities = 66/80 (82%) Strand = Plus / Minus Query: 355 ttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacct 414 ||||||| |||||| || | |||||||||||| | ||||| | |||||||||||| || Sbjct: 1318 ttgcagatggggtactcgtgagggcagcagctgtagtgatcatcgcagcaggtggcgccc 1259 Query: 415 tccgctgggcagcagcccca 434 || ||||||||||||||| Sbjct: 1258 tcgagtgggcagcagcccca 1239
>dbj|AK071913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065M08, full insert sequence Length = 1774 Score = 48.1 bits (24), Expect = 0.030 Identities = 66/80 (82%) Strand = Plus / Minus Query: 355 ttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacct 414 ||||||| |||||| || | |||||||||||| | ||||| | |||||||||||| || Sbjct: 1318 ttgcagatggggtactcgtgagggcagcagctgtagtgatcatcgcagcaggtggcgccc 1259 Query: 415 tccgctgggcagcagcccca 434 || ||||||||||||||| Sbjct: 1258 tcgagtgggcagcagcccca 1239
>dbj|AK061729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B12, full insert sequence Length = 976 Score = 48.1 bits (24), Expect = 0.030 Identities = 66/80 (82%) Strand = Plus / Minus Query: 355 ttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacct 414 ||||||| |||||| || | |||||||||||| | ||||| | |||||||||||| || Sbjct: 520 ttgcagatggggtactcgtgagggcagcagctgtagtgatcatcgcagcaggtggcgccc 461 Query: 415 tccgctgggcagcagcccca 434 || ||||||||||||||| Sbjct: 460 tcgagtgggcagcagcccca 441
>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence Length = 118971 Score = 48.1 bits (24), Expect = 0.030 Identities = 66/80 (82%) Strand = Plus / Plus Query: 355 ttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacct 414 ||||||| |||||| || | |||||||||||| | ||||| | |||||||||||| || Sbjct: 48170 ttgcagatggggtactcgtgagggcagcagctgtagtgatcatcgcagcaggtggcgccc 48229 Query: 415 tccgctgggcagcagcccca 434 || ||||||||||||||| Sbjct: 48230 tcgagtgggcagcagcccca 48249
>dbj|D90406.1|RICOZA Oryza sativa (japonica cultivar-group) mRNA for oryzain alpha, complete cds Length = 1929 Score = 48.1 bits (24), Expect = 0.030 Identities = 66/80 (82%) Strand = Plus / Minus Query: 355 ttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacct 414 ||||||| |||||| || | |||||||||||| | ||||| | |||||||||||| || Sbjct: 1298 ttgcagatggggtactcgtgagggcagcagctgtagtgatcatcgcagcaggtggcgccc 1239 Query: 415 tccgctgggcagcagcccca 434 || ||||||||||||||| Sbjct: 1238 tcgagtgggcagcagcccca 1219
>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence Length = 165745 Score = 48.1 bits (24), Expect = 0.030 Identities = 66/80 (82%) Strand = Plus / Plus Query: 355 ttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacct 414 ||||||| |||||| || | |||||||||||| | ||||| | |||||||||||| || Sbjct: 40427 ttgcagatggggtactcgtgagggcagcagctgtagtgatcatcgcagcaggtggcgccc 40486 Query: 415 tccgctgggcagcagcccca 434 || ||||||||||||||| Sbjct: 40487 tcgagtgggcagcagcccca 40506
>gb|AC109586.2| Homo sapiens chromosome 3 clone CTD-2008P21, complete sequence Length = 190170 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 cgctgggcagcagccccacac 437 ||||||||||||||||||||| Sbjct: 143373 cgctgggcagcagccccacac 143393
>dbj|AB252653.1| Platycodon grandiflorus PgCP1 mRNA for cysteine proteinase, complete cds Length = 1676 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 355 ttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacct 414 ||||| || |||||||| |||||||||| || ||||||| | |||||||||||||| Sbjct: 1294 ttgcatacagggtagtcgtgtgggcagcaactataatgatcatcacagcaggtggcaccg 1235 Query: 415 tccgctgggcagcagccccac 435 || ||||||||| |||||| Sbjct: 1234 tcaagtgggcagcatccccac 1214
>emb|BX248113.22| Zebrafish DNA sequence from clone CH211-132F21, complete sequence Length = 146026 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 154 atgtctggtttaaattttgaacaaa 178 |||||||||||||||||| |||||| Sbjct: 36125 atgtctggtttaaattttcaacaaa 36101
>gb|DQ430402.1| Sorghum propinquum locus pSHR0111.4 genomic sequence Length = 718 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430401.1| Sorghum bicolor voucher PI585454 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430400.1| Sorghum bicolor voucher PI267539 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430399.1| Sorghum bicolor voucher PI267408 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430398.1| Sorghum bicolor voucher PI221607 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430397.1| Sorghum bicolor voucher PI152702 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430396.1| Sorghum bicolor voucher NSL92371 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430395.1| Sorghum bicolor voucher NSL87902b locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430394.1| Sorghum bicolor voucher NSL87902a locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430393.1| Sorghum bicolor voucher NSL87666b locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430392.1| Sorghum bicolor voucher NSL87666a locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430391.1| Sorghum bicolor voucher NSL77217 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430390.1| Sorghum bicolor voucher NSL77034 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430389.1| Sorghum bicolor voucher NSL56174 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430388.1| Sorghum bicolor voucher NSL56003 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430387.1| Sorghum bicolor voucher NSL55243 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430386.1| Sorghum bicolor voucher NSL51365 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430385.1| Sorghum bicolor voucher NSL51030 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430384.1| Sorghum bicolor voucher NSL50875 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|DQ430383.1| Sorghum bicolor voucher BTx623 locus pSHR0111.4 genomic sequence Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 66/81 (81%) Strand = Plus / Minus Query: 354 gttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcacc 413 |||||||| ||||||||| | |||||||||||| | ||||| | ||||||||||| || Sbjct: 103 gttgcagatggggtagtcatgggggcagcagctgtagtgatcgtcacagcaggtggcgcc 44 Query: 414 ttccgctgggcagcagcccca 434 || |||||||||||||| Sbjct: 43 ctcgagcgggcagcagcccca 23
>gb|AF133838.1| Sandersonia aurantiaca papain-like cysteine protease (PRT15) mRNA, partial cds Length = 1456 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 376 gggcagcagctggaatgatccttgcagcaggtggcaccttc 416 ||||||||||| || ||||| | ||||||||||||||||| Sbjct: 968 gggcagcagctagagtgatcatcacagcaggtggcaccttc 928
>gb|AY700588.1| Zingiber officinale cysteine protease gp3b mRNA, complete cds Length = 1575 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 376 gggcagcagctggaatgatccttgcagcaggt 407 |||||||||||| | || |||||||||||||| Sbjct: 1286 gggcagcagctgtagtggtccttgcagcaggt 1255
>ref|NM_123672.2| Arabidopsis thaliana cysteine-type endopeptidase/ cysteine-type peptidase AT5G43060 mRNA, complete cds Length = 1675 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 292 cgcttcaaagccttcacgctcagcgggctgttcttg 327 ||||| |||||||||||||| | ||| ||||||||| Sbjct: 1386 cgctttaaagccttcacgctaaacggactgttcttg 1351
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 agcaagtcccagccctgatg 354 |||||||||||||||||||| Sbjct: 699142 agcaagtcccagccctgatg 699123
>ref|NM_193511.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1179 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ggaggaggcggcgtcggcgg 548 |||||||||||||||||||| Sbjct: 550 ggaggaggcggcgtcggcgg 531
>gb|AC084310.16| Mus musculus chromosome 1, clone RP23-10C10, complete sequence Length = 194800 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 cagccccacaccaggcaaag 446 |||||||||||||||||||| Sbjct: 8777 cagccccacaccaggcaaag 8796
>ref|XM_548191.2| PREDICTED: Canis familiaris similar to Tumor necrosis factor receptor superfamily member 16 precursor (Low-affinity nerve growth factor receptor) (NGF receptor) (Gp80-LNGFR) (p75 ICD) (Low affinity neurotrophin receptor p75NTR) (LOC491071), mRNA Length = 1224 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ggagggagaaaagctccaca 214 |||||||||||||||||||| Sbjct: 828 ggagggagaaaagctccaca 847
>gb|AC125340.3| Mus musculus BAC clone RP24-364H15 from chromosome 1, complete sequence Length = 177161 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 cagccccacaccaggcaaag 446 |||||||||||||||||||| Sbjct: 155750 cagccccacaccaggcaaag 155769
>emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chromosome 10, complete sequence Length = 131465 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 cttctacacaaaagcaatgt 157 |||||||||||||||||||| Sbjct: 31291 cttctacacaaaagcaatgt 31310
>emb|AL031781.1|HS51J12 Human DNA sequence from clone RP1-51J12 on chromosome 6q26-27 Contains the 3' part of the alternatively spliced gene for the human orthologs of mouse QKI-7 and QKI-7B (KH Domain RNA Binding proteins) and zebrafish ZKQ-1 (Quaking protein homolog), complete sequence Length = 117813 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 cagcagctggaatgatcctt 398 |||||||||||||||||||| Sbjct: 44237 cagcagctggaatgatcctt 44256
>emb|CR378665.1| Photobacterium profundum SS9; segment 3/12 Length = 347213 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cttcaaagccttcacgctca 313 |||||||||||||||||||| Sbjct: 135303 cttcaaagccttcacgctca 135284
>emb|AL935165.5| Zebrafish DNA sequence from clone CH211-198D18 in linkage group 4 Contains the cugbp2 gene for CUG triplet repeat, RNA binding protein 2, the 5' end of a novel gene and a CpG island, complete sequence Length = 182748 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gggagaaaagctccacacag 217 |||||||||||||||||||| Sbjct: 9136 gggagaaaagctccacacag 9155
>emb|CR927553.8| Zebrafish DNA sequence from clone DKEY-206P8 in linkage group 17, complete sequence Length = 162064 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gggagaaaagctccacacag 217 |||||||||||||||||||| Sbjct: 100074 gggagaaaagctccacacag 100055
>gb|AY114661.1| Arabidopsis thaliana cysteine protease component of protease-inhibitor complex (At5g43060) mRNA, complete cds Length = 1485 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 292 cgcttcaaagccttcacgctcagcgggctgttcttg 327 ||||| |||||||||||||| | ||| ||||||||| Sbjct: 1343 cgctttaaagccttcacgctaaacggactgttcttg 1308
>dbj|AK074888.1| Homo sapiens cDNA FLJ90407 fis, clone NT2RP2006269, highly similar to Protein O-mannosyl-transferase 1 (EC2.4.1.109) Length = 2904 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ctgagcaagtcccagccctg 351 |||||||||||||||||||| Sbjct: 2620 ctgagcaagtcccagccctg 2639
>gb|AC113410.2| Homo sapiens chromosome 5 clone RP11-485M7, complete sequence Length = 123851 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aattttgaacaaaggtttgt 185 |||||||||||||||||||| Sbjct: 81154 aattttgaacaaaggtttgt 81173
>gb|AY062608.1| Arabidopsis thaliana cysteine protease component of protease-inhibitor complex (At5g43060; MMG4.7) mRNA, complete cds Length = 1628 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 292 cgcttcaaagccttcacgctcagcgggctgttcttg 327 ||||| |||||||||||||| | ||| ||||||||| Sbjct: 1387 cgctttaaagccttcacgctaaacggactgttcttg 1352
>ref|XM_683099.1| PREDICTED: Danio rerio similar to zinc finger protein 91 (HPF7, HTF10) (LOC559733), mRNA Length = 6768 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 496 aagttctcgtcgcagacgtggtca 519 ||||||||||| |||||||||||| Sbjct: 1748 aagttctcgtcacagacgtggtca 1771
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 caggtgctgcctgcagggca 491 |||||||||||||||||||| Sbjct: 3282074 caggtgctgcctgcagggca 3282055
>gb|AC159023.4| Pan troglodytes BAC clone CH251-506L16 from chromosome unknown, complete sequence Length = 180977 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aattttgaacaaaggtttgt 185 |||||||||||||||||||| Sbjct: 61397 aattttgaacaaaggtttgt 61416
>gb|AC022084.6|AC022084 Homo sapiens chromosome 15 clone CTD-2151I2 map 15q21.1, complete sequence Length = 84724 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 cagcagctggaatgatcctt 398 |||||||||||||||||||| Sbjct: 19441 cagcagctggaatgatcctt 19460
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 aagatagtaccagtacaaat 51 |||||||||||||||||||| Sbjct: 14406465 aagatagtaccagtacaaat 14406484
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gtagtagtagggatatataa 99 |||||||||||||||||||| Sbjct: 7966420 gtagtagtagggatatataa 7966401
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 ggaggaggcggcgtcggcgg 548 |||||||||||||||||||| Sbjct: 21280994 ggaggaggcggcgtcggcgg 21281013
>gb|AC090522.1|AC090522 Caenorhabditis briggsae cosmid CB015K23, complete sequence Length = 46455 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 ttccctcgacgacttcatgccgtg 273 |||||||||||||||| ||||||| Sbjct: 14901 ttccctcgacgacttcgtgccgtg 14924
>gb|AC084757.2|AC084757 Homo sapiens chromosome 15 clone RP11-227D13 map 15q21.1, complete sequence Length = 157348 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 cagcagctggaatgatcctt 398 |||||||||||||||||||| Sbjct: 93913 cagcagctggaatgatcctt 93932
>gb|AC026342.34| Homo sapiens 3 BAC RP11-559L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109490 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 aattcttctacacaaaagcaatgt 157 |||||||||||| ||||||||||| Sbjct: 86450 aattcttctacaaaaaagcaatgt 86427
>gb|AF454957.1| Brassica oleracea senescence-associated cysteine protease (CP2) mRNA, complete cds Length = 1699 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cgcttcaaagccttcacgct 311 |||||||||||||||||||| Sbjct: 1358 cgcttcaaagccttcacgct 1339
>gb|AC084526.1|CBRG21D19 Caenorhabditis briggsae cosmid G21D19, complete sequence Length = 42422 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 ttccctcgacgacttcatgccgtg 273 |||||||||||||||| ||||||| Sbjct: 31196 ttccctcgacgacttcgtgccgtg 31219
>gb|AC084515.1|CBRG17N15 Caenorhabditis briggsae cosmid G17N15, complete sequence Length = 40280 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 ttccctcgacgacttcatgccgtg 273 |||||||||||||||| ||||||| Sbjct: 38362 ttccctcgacgacttcgtgccgtg 38385
>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0496H05 Length = 147817 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 ggaggaggcggcgtcggcgg 548 |||||||||||||||||||| Sbjct: 2932 ggaggaggcggcgtcggcgg 2951
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 ggaggaggcggcgtcggcgg 548 |||||||||||||||||||| Sbjct: 178503 ggaggaggcggcgtcggcgg 178522
>gb|AY973616.1| Manihot esculenta cysteine protease CP1 mRNA, complete cds Length = 1831 Score = 40.1 bits (20), Expect = 7.4 Identities = 68/84 (80%) Strand = Plus / Minus Query: 352 atgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcaggtggca 411 |||||||||| ||| ||||| ||||||||||||| |||| || | |||||||| ||| Sbjct: 1324 atgttgcagatgggatagtcatgtgggcagcagctataatggtcttcacagcaggtagca 1265 Query: 412 ccttccgctgggcagcagccccac 435 || || ||||||||| |||||| Sbjct: 1264 ccctcaagtgggcagcatccccac 1241
>gb|AC026329.14| Homo sapiens 3 BAC RP11-325J6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 117404 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggcagcagccccacaccagg 441 |||||||||||||||||||| Sbjct: 45431 ggcagcagccccacaccagg 45450
>gb|AC022898.11| Homo sapiens chromosome 15, clone RP11-554D20, complete sequence Length = 200380 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gtgtgcaggagggagaaaag 207 |||||||||||||||||||| Sbjct: 57431 gtgtgcaggagggagaaaag 57412
>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461A06 Length = 136384 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gtagtagtagggatatataa 99 |||||||||||||||||||| Sbjct: 38590 gtagtagtagggatatataa 38571
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 aagatagtaccagtacaaat 51 |||||||||||||||||||| Sbjct: 98268 aagatagtaccagtacaaat 98287
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 aagatagtaccagtacaaat 51 |||||||||||||||||||| Sbjct: 6030 aagatagtaccagtacaaat 6049
>emb|BX005263.10| Mouse DNA sequence from clone RP23-395K13 on chromosome X, complete sequence Length = 175998 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tatgtacaatgaatacatgt 81 |||||||||||||||||||| Sbjct: 10764 tatgtacaatgaatacatgt 10745
>dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4 Length = 79046 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 292 cgcttcaaagccttcacgctcagcgggctgttcttg 327 ||||| |||||||||||||| | ||| ||||||||| Sbjct: 15772 cgctttaaagccttcacgctaaacggactgttcttg 15807
>emb|AL772314.9| Zebrafish DNA sequence from clone DKEY-89B17 in linkage group 19, complete sequence Length = 185640 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 496 aagttctcgtcgcagacgtggtca 519 ||||||||||| |||||||||||| Sbjct: 57519 aagttctcgtcacagacgtggtca 57542
>gb|U41902.1|PMU41902 Pseudosuga menziesii cysteine protease pseudotzain (PM33cysP) mRNA, complete cds Length = 1882 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 376 gggcagcagctggaatgatccttgcagcaggtggca 411 |||||||||||| | ||||| | ||||||||||||| Sbjct: 1397 gggcagcagctgtagtgatcgtcgcagcaggtggca 1362
>emb|AJ812010.1| Aspergillus niger gene for putative peptidase, exon 1 Length = 2960 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gtgcaggagggagaaaagct 209 |||||||||||||||||||| Sbjct: 951 gtgcaggagggagaaaagct 932
>emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete sequence Length = 194045 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 atatttttaagatagtacca 43 |||||||||||||||||||| Sbjct: 109851 atatttttaagatagtacca 109870
>dbj|AB063035.1| Macaca fascicularis brain cDNA clone:QmoA-11702, full insert sequence Length = 2042 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 agcaggtgctgcctgcaggg 489 |||||||||||||||||||| Sbjct: 708 agcaggtgctgcctgcaggg 727 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,248,688 Number of Sequences: 3902068 Number of extensions: 5248688 Number of successful extensions: 103505 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 103082 Number of HSP's gapped (non-prelim): 424 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)